Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 8.8e-72 273.5 134 100.0
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 7.2e-58 227.3 111 99.1
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 1.7e-54 216.1 105 98.1
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 2.5e-50 202.2 105 90.5
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 6.1e-49 197.6 105 88.6
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 1.4e-48 196.4 105 86.7
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 1.6e-44 183.0 107 82.2
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 1.3e-43 179.9 105 81.0
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 2.9e-43 178.7 105 80.0
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 1.1e-42 176.8 105 81.0
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 1.1e-42 176.8 105 81.0
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 5.6e-42 174.5 105 79.0
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 2.1e-41 172.6 105 79.0
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 3.6e-41 171.8 105 78.1
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 8.0e-41 170.6 110 76.4
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 1.2e-39 166.8 105 77.1
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 1.5e-39 166.4 105 76.2
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 1.5e-39 166.4 105 73.3
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 2.0e-39 166.0 109 75.2
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 7.5e-39 164.1 105 75.2
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 9.8e-39 163.7 105 75.2
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 1.7e-38 162.9 118 67.8
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 2.2e-38 162.5 105 74.3
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 2.9e-38 162.2 109 70.6
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 3.7e-38 161.8 105 75.2
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 3.7e-38 161.8 105 72.4
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 3.7e-38 161.8 109 75.2
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 6.4e-38 161.0 108 74.1
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 6.4e-38 161.0 111 73.0
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 8.3e-38 160.6 105 71.4
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 8.3e-38 160.6 105 73.3
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 1.1e-37 160.2 108 74.1
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 1.1e-37 160.2 105 75.2
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 1.1e-37 160.2 105 74.3
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 1.1e-37 160.2 105 71.4
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 1.4e-37 159.8 108 74.1
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 1.4e-37 159.8 108 74.1
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 1.4e-37 159.8 108 74.1
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 1.4e-37 159.8 108 74.1
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 1.4e-37 159.8 105 74.3
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 1.8e-37 159.5 110 73.6
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 1.8e-37 159.5 110 73.6
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 2.4e-37 159.1 108 73.1
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 2.4e-37 159.1 105 73.3
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 3.2e-37 158.7 111 72.1
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 3.2e-37 158.7 109 69.7
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 4.1e-37 158.3 106 75.5
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 5.4e-37 157.9 110 71.8
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 5.4e-37 157.9 105 73.3
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 5.4e-37 157.9 106 72.6
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 5.4e-37 157.9 105 70.5
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 9.2e-37 157.1 105 69.5
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 9.2e-37 157.1 109 69.7
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 9.2e-37 157.1 105 72.4
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 1.2e-36 156.8 105 70.5
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 1.2e-36 156.8 105 72.4
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 1.6e-36 156.4 105 69.5
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 1.6e-36 156.4 105 71.4
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 1.6e-36 156.4 105 71.4
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 1.6e-36 156.4 109 68.8
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 1.6e-36 156.4 105 73.3
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 2.0e-36 156.0 109 69.7
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 2.0e-36 156.0 105 72.4
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 2.7e-36 155.6 105 73.3
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 3.5e-36 155.2 105 72.4
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 3.5e-36 155.2 109 69.7
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 4.6e-36 154.8 105 68.6
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 5.9e-36 154.5 105 71.4
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 5.9e-36 154.5 105 71.4
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 5.9e-36 154.5 105 72.4
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 5.9e-36 154.5 105 73.3
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 5.9e-36 154.5 109 67.9
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 7.8e-36 154.1 105 71.4
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 1.0e-35 153.7 105 72.4
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 1.7e-35 152.9 105 72.4
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.7e-35 152.9 105 72.4
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 3.9e-35 151.8 105 70.5
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 6.6e-35 151.0 105 71.4
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 8.6e-35 150.6 106 71.7
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 8.6e-35 150.6 105 70.5
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 3.3e-34 148.7 109 67.0
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 9.5e-34 147.1 106 71.7
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 2.3e-32 142.5 109 64.2
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.0e-32 141.7 105 64.8
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 8.9e-32 140.6 113 63.7
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 3.4e-31 138.7 107 66.4
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 2.0e-28 129.4 109 59.6
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 2.0e-28 129.4 105 61.9
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 2.7e-28 129.0 105 60.0
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 1.3e-27 126.7 105 56.2
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 8.6e-27 124.0 105 57.1
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 1.1e-26 123.6 76 78.9
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 5.6e-26 121.3 77 76.6
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 7.3e-26 120.9 77 77.9
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 2.1e-25 119.4 68 85.3
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 6.2e-25 117.9 58 91.4
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 1.7e-22 109.8 109 53.2
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 3.7e-22 108.6 256 31.6
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 8.3e-22 107.5 107 53.3
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.9e-21 106.3 105 51.4
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 7.1e-21 104.4 99 53.5
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.6e-20 103.2 72 66.7
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 2.1e-20 102.8 75 64.0
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 8.1e-17 90.9 76 60.5
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 3.0e-11 72.4 37 91.9
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 1.1e-10 70.5 33 100.0
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.1e-09 66.2 33 90.9
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 9.9e-07 57.4 46 52.2
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 1.3e-06 57.0 37 70.3


User provided reference genes

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