Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 6.2e-224 780.4 374 100.0
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 3.5e-203 711.4 374 90.1
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 2.8e-184 648.7 375 82.1
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 3.1e-183 645.2 381 80.8
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 6.3e-176 620.9 378 77.8
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 2.4e-175 619.0 379 76.8
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 1.2e-174 616.7 379 75.2
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 6.5e-173 610.9 377 75.1
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 8.5e-173 610.5 379 76.3
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 3.2e-172 608.6 379 76.0
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 4.6e-171 604.7 378 73.8
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 3.0e-170 602.1 378 76.2
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 5.1e-170 601.3 376 74.2
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 8.8e-170 600.5 379 75.5
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.1e-169 600.1 379 75.7
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 1.5e-169 599.7 379 74.1
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 5.7e-169 597.8 383 73.1
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 9.7e-169 597.0 378 73.0
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 1.3e-168 596.7 380 73.2
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 2.8e-168 595.5 377 74.3
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 6.3e-168 594.3 379 75.5
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 8.2e-168 594.0 379 73.6
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 1.1e-167 593.6 379 72.8
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.1e-167 593.6 379 74.1
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 1.4e-167 593.2 379 74.1
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 4.1e-167 591.7 376 74.2
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 5.3e-167 591.3 379 72.8
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.5e-166 589.7 379 73.6
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 5.9e-166 587.8 375 73.1
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 5.9e-166 587.8 376 73.1
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 1.0e-165 587.0 377 71.9
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 2.2e-165 585.9 387 71.3
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 7.2e-164 580.9 377 71.9
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 2.7e-163 578.9 379 71.8
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 8.8e-162 573.9 380 72.6
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.5e-161 573.2 414 66.7
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 5.7e-161 571.2 375 70.7
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 5.7e-161 571.2 375 70.7
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 1.3e-160 570.1 375 70.9
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 1.3e-160 570.1 367 74.1
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 2.8e-160 568.9 375 70.7
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 3.7e-160 568.5 372 71.5
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 6.3e-160 567.8 375 70.4
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 1.1e-159 567.0 375 70.7
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.4e-159 566.6 375 70.1
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 1.8e-159 566.2 375 70.9
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 2.4e-159 565.8 375 70.1
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 3.1e-159 565.5 386 69.4
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 5.3e-159 564.7 375 70.4
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 5.3e-159 564.7 375 70.4
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 5.3e-159 564.7 375 70.4
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 5.3e-159 564.7 374 71.4
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 9.1e-159 563.9 375 69.9
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 9.1e-159 563.9 367 70.3
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 2.6e-158 562.4 378 71.2
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.0e-157 560.5 374 70.9
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.0e-157 560.5 374 70.9
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 3.8e-157 558.5 378 69.3
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 6.5e-157 557.8 374 70.9
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 1.1e-156 557.0 340 75.0
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 1.4e-156 556.6 377 69.5
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 1.4e-156 556.6 394 69.3
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.9e-156 556.2 373 67.6
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 3.2e-156 555.4 367 71.4
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 1.1e-153 547.0 384 70.8
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.7e-149 533.1 358 70.9
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 5.0e-149 531.6 339 74.6
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 1.1e-148 530.4 380 66.8
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 5.5e-148 528.1 356 71.1
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.6e-147 526.6 379 67.0
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 1.8e-146 523.1 379 67.0
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.8e-146 523.1 366 68.6
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 5.2e-146 521.5 327 76.5
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 1.2e-145 520.4 406 62.1
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 9.7e-145 517.3 380 66.6
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 9.7e-145 517.3 377 65.8
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 1.8e-143 513.1 281 81.9
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 5.3e-143 511.5 383 66.3
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 3.5e-142 508.8 379 64.6
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 7.7e-142 507.7 335 72.2
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 3.2e-140 502.3 388 64.4
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 2.7e-139 499.2 379 64.1
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 3.6e-139 498.8 379 64.9
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 1.4e-138 496.9 335 70.4
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 1.4e-138 496.9 352 70.5
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 2.3e-138 496.1 379 63.3
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 5.2e-138 495.0 378 63.8
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.0e-137 493.0 323 72.4
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 7.5e-137 491.1 358 65.6
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 7.5e-137 491.1 374 63.6
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 2.8e-136 489.2 376 63.6
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 4.8e-136 488.4 368 62.5
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 6.3e-136 488.0 379 62.3
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 1.1e-135 487.3 376 63.6
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 1.4e-135 486.9 376 63.0
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.4e-135 486.9 376 63.3
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 1.8e-135 486.5 376 63.6
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 2.4e-135 486.1 368 63.9
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 4.1e-135 485.3 376 63.0
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 5.4e-135 485.0 375 62.7
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 5.4e-135 485.0 367 62.9
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 1.9e-132 476.5 368 64.1
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 4.2e-132 475.3 376 62.0
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 5.5e-132 474.9 376 62.0
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 5.7e-129 464.9 253 82.6
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 7.5e-129 464.5 378 60.8
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 7.5e-129 464.5 378 60.8
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.1e-127 460.7 380 57.4
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 9.2e-127 457.6 378 59.5
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 9.2e-127 457.6 257 80.9
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.0e-122 444.1 362 56.9
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 5.2e-122 441.8 376 58.8
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 2.9e-120 436.0 253 75.5
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 3.7e-120 435.6 390 54.4
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.0e-118 429.9 370 54.1
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 8.6e-117 424.5 281 69.4
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 2.1e-115 419.9 390 52.8
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 8.9e-114 414.5 380 51.1
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 1.7e-112 410.2 379 57.3
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 5.2e-106 388.7 224 79.0
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.3e-101 374.0 373 52.8
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.2e-99 367.5 305 61.0
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.3e-93 347.4 302 57.0
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 4.9e-80 302.4 536 34.1
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 2.5e-76 290.0 210 71.4
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 4.6e-70 269.2 147 83.0
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.0e-69 268.1 271 52.0
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.3e-69 267.7 144 84.0
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.3e-69 266.9 214 62.6
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 4.9e-64 249.2 357 36.4
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 1.8e-58 230.7 220 56.8
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 7.2e-55 218.8 146 75.3
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.0e-53 214.9 134 70.1
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 6.9e-50 202.2 153 69.3
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.8e-42 177.6 111 69.4
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 1.0e-37 161.8 267 33.7
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 3.9e-37 159.8 139 59.0
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.6e-33 147.9 92 68.5
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 4.7e-30 136.3 279 29.4
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 2.5e-23 114.0 146 47.3
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 3.4e-20 103.6 86 59.3
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 2.2e-19 100.9 57 73.7
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.1e-18 98.6 66 66.7
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 4.2e-15 86.7 86 53.5
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 3.6e-14 83.6 52 63.5
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 1.5e-12 78.2 48 77.1
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.4e-10 71.6 57 56.1
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 3.6e-06 57.0 40 62.5


User provided reference genes

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