Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 9.5e-203 709.9 346 100.0
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 1.1e-145 520.4 368 69.6
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 3.0e-140 502.3 347 70.0
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 1.6e-133 479.9 369 62.9
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 3.9e-132 475.3 388 61.6
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 9.7e-131 470.7 382 61.5
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 1.7e-130 469.9 344 64.0
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 2.2e-130 469.5 389 59.9
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 2.0e-128 463.0 386 59.3
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 2.0e-128 463.0 381 59.1
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 1.0e-127 460.7 376 59.0
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.3e-127 460.3 373 60.3
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 2.2e-127 459.5 366 62.0
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 1.1e-126 457.2 391 57.8
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.1e-126 457.2 381 58.5
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 1.1e-126 457.2 388 59.5
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 1.4e-126 456.8 388 57.5
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 2.5e-126 456.1 392 57.7
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 4.2e-126 455.3 381 58.5
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 4.2e-126 455.3 388 58.5
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 5.5e-126 454.9 384 57.3
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 5.5e-126 454.9 376 59.0
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 7.2e-126 454.5 376 59.0
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 1.6e-125 453.4 392 58.7
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 2.1e-125 453.0 402 56.2
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.7e-125 452.6 389 57.6
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 4.7e-125 451.8 362 59.4
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 4.7e-125 451.8 380 59.5
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 1.0e-124 450.7 381 57.0
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 1.8e-124 449.9 389 59.1
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 2.3e-124 449.5 375 60.3
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 3.0e-124 449.1 387 59.4
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.0e-124 449.1 391 57.5
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 3.9e-124 448.7 387 57.6
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 8.8e-124 447.6 363 61.2
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.1e-123 447.2 385 58.7
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 2.6e-123 446.0 382 57.3
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 2.6e-123 446.0 407 57.5
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 9.7e-123 444.1 382 57.1
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 2.2e-122 443.0 383 56.4
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 3.7e-122 442.2 410 55.1
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 1.8e-121 439.9 384 55.7
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 3.1e-121 439.1 366 57.9
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 4.1e-121 438.7 382 55.5
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 4.1e-121 438.7 384 56.0
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 9.1e-121 437.6 389 56.8
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 9.1e-121 437.6 380 59.2
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.2e-120 437.2 425 53.4
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.5e-120 436.8 390 56.9
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 2.0e-120 436.4 382 55.2
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 3.4e-120 435.6 384 55.7
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 4.5e-120 435.3 384 57.3
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 5.9e-120 434.9 384 55.5
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 5.9e-120 434.9 382 55.0
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.3e-119 433.7 420 53.6
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.7e-119 433.3 405 54.3
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 2.2e-119 433.0 384 55.5
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 2.2e-119 433.0 384 55.5
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 2.9e-119 432.6 382 54.7
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 5.0e-119 431.8 388 55.7
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.4e-118 430.3 381 57.0
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 1.9e-118 429.9 384 54.9
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 4.2e-118 428.7 382 57.1
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 9.4e-118 427.6 383 56.9
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 1.6e-117 426.8 382 55.5
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 1.6e-117 426.8 399 55.1
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 4.7e-117 425.2 412 53.9
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 6.1e-117 424.9 373 56.8
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 3.0e-116 422.5 383 55.6
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 8.8e-116 421.0 471 48.8
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 1.7e-114 416.8 455 49.5
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 3.8e-111 405.6 366 54.4
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 8.5e-111 404.4 400 52.2
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 8.5e-111 404.4 357 56.6
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 9.4e-110 401.0 379 53.0
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 1.2e-109 400.6 359 56.8
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 8.0e-109 397.9 386 52.6
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 2.3e-108 396.4 499 44.5
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 3.0e-108 396.0 352 58.0
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 6.3e-106 388.3 369 53.9
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.4e-105 386.3 354 55.9
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 5.0e-103 378.6 387 51.7
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 1.5e-102 377.1 378 50.8
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.1e-94 350.9 408 47.5
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 3.3e-94 349.4 313 55.3
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 1.3e-90 337.4 354 47.5
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 3.7e-90 335.9 304 56.2
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 3.1e-89 332.8 499 40.3
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 5.9e-88 328.6 404 45.3
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 1.8e-84 317.0 369 46.6
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 2.4e-81 306.6 346 44.2
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 1.6e-80 303.9 212 68.9
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 5.4e-73 278.9 214 61.2
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 5.1e-71 272.3 261 54.8
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 5.6e-70 268.9 288 48.3
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 4.9e-66 255.8 340 42.9
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 4.1e-65 252.7 170 64.7
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 1.6e-61 240.7 216 59.3
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 8.1e-61 238.4 169 62.7
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 2.2e-58 230.3 346 41.3
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 4.9e-58 229.2 394 39.8
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 1.4e-57 227.6 146 67.1
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 4.2e-57 226.1 218 55.0
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 3.0e-55 219.9 141 66.0
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 1.1e-52 211.5 560 27.7
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 5.4e-49 199.1 126 70.6
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 2.3e-47 193.7 217 46.5
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 2.5e-46 190.3 121 66.9
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 2.1e-45 187.2 228 41.2
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 9.9e-43 178.3 349 36.7
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 1.7e-42 177.6 117 68.4
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.3e-39 167.2 113 62.8
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 7.4e-38 162.2 411 29.4
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 4.8e-37 159.5 122 59.8
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 2.4e-36 157.1 263 37.3
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 3.1e-36 156.8 99 70.7
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 3.8e-34 149.8 224 39.3
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 5.1e-31 139.4 180 41.1
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 1.4e-28 131.3 79 77.2
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.0e-26 125.2 359 29.5
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 3.8e-26 123.2 438 26.9
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 5.5e-25 119.4 405 26.2
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.1e-20 105.1 132 43.9
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 2.4e-20 104.0 91 60.4
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 2.4e-20 104.0 91 60.4
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 1.2e-16 91.7 54 74.1
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 5.1e-15 86.3 51 74.5
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 1.5e-14 84.7 55 60.0
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 4.3e-14 83.2 103 43.7
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 9.1e-12 75.5 58 55.2
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 5.9e-11 72.8 354 22.3
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 2.2e-10 70.9 331 21.5
MCO01G363 Micromonas commoda HOM05D002561 ORTHO05D006466 2.2e-10 70.9 334 22.5
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 2.9e-10 70.5 331 21.1
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 2.9e-10 70.5 331 21.1
Migut.D00238 Erythranthe guttata HOM05D002561 ORTHO05D006466 8.5e-10 68.9 347 21.3
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 8.5e-10 68.9 330 21.8
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 3.2e-09 67.0 359 22.3
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 4.2e-09 66.6 40 70.0
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 4.2e-09 66.6 330 20.3
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.2e-08 65.1 241 27.8
SMO347G0106 Selaginella moellendorffii HOM05D002561 ORTHO05D006466 1.6e-08 64.7 343 20.7
CDE03G0236 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 2.7e-08 63.9 349 22.6
Cfa014656 Carpinus fangiana HOM05D002561 ORTHO05D006466 7.9e-08 62.4 345 22.6
Glyma.02G251700 Glycine max HOM05D002561 ORTHO05D006466 1.0e-07 62.0 346 21.1
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 1.0e-07 62.0 308 25.3
CsaV3_7G003080 Cucumis sativus L. HOM05D002561 ORTHO05D006466 1.4e-07 61.6 343 23.6
Sc24g0000990 Simmondsia chinensis HOM05D002561 ORTHO05D006466 1.4e-07 61.6 336 21.7
Zm00001eb064830 Zea mays HOM05D002561 ORTHO05D006466 1.4e-07 61.6 347 21.6
BcaC06g32621 Brassica carinata HOM05D002561 ORTHO05D006466 1.8e-07 61.2 266 23.7
DCAR_013032 Daucus carota HOM05D002561 ORTHO05D006466 2.3e-07 60.8 335 21.8
Thhalv10025176m.g Eutrema salsugineum HOM05D002561 ORTHO05D006466 2.3e-07 60.8 344 20.6
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 2.3e-07 60.8 38 63.2
ClCG02G002370 Citrullus lanatus HOM05D002561 ORTHO05D006466 3.0e-07 60.5 349 22.3
MELO3C018869.2 Cucumis melo HOM05D002561 ORTHO05D006466 3.0e-07 60.5 351 22.8
Ah.03g138410 Amaranthus hybridus HOM05D002561 ORTHO05D006466 3.9e-07 60.1 342 21.1
CARHR258380 Cardamine hirsuta HOM05D000464 ORTHO05D006292 3.9e-07 60.1 335 19.7
GSVIVG01020601001 Vitis vinifera HOM05D002561 ORTHO05D006466 3.9e-07 60.1 345 20.6
Pp3c7_9990 Physcomitrium patens HOM05D004669 ORTHO05D005767 5.1e-07 59.7 213 23.5
CiPaw.03G181000 Carya illinoinensis HOM05D002561 ORTHO05D006466 6.7e-07 59.3 342 21.6
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 6.7e-07 59.3 332 20.8
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 6.7e-07 59.3 274 25.2
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 1.1e-06 58.5 334 19.5
PSO782G0979 Papaver somniferum HOM05D002561 ORTHO05D006466 1.1e-06 58.5 337 21.7
Cc05_g07670 Coffea canephora HOM05D002561 ORTHO05D006466 1.5e-06 58.2 345 21.4
HanXRQChr05g0140561 Helianthus annuus HOM05D002561 ORTHO05D006466 1.5e-06 58.2 341 21.1
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 2.6e-06 57.4 332 23.8
MSTRG.15131 Avicennia marina HOM05D002561 ORTHO05D006466 3.3e-06 57.0 338 21.6
CSS0024007 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D006466 4.4e-06 56.6 344 21.5
Cre16.g678808 Chlamydomonas reinhardtii HOM05D043792 ORTHO05D143310 4.4e-06 56.6 148 27.7
CAN.G209.6 Capsicum annuum HOM05D002561 ORTHO05D006466 5.7e-06 56.2 335 20.6
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 5.7e-06 56.2 30 83.3
Prupe.1G573700 Prunus persica HOM05D002561 ORTHO05D006466 7.4e-06 55.8 345 21.4
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 9.7e-06 55.5 342 21.1


User provided reference genes

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