Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 2967.9 1483 100.0
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 2020.4 1500 68.9
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 2004.6 1500 68.5
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1925.2 1521 65.0
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1666.4 1505 57.1
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1590.1 1497 54.7
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1575.8 1532 54.3
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1575.1 1535 53.6
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1562.7 1459 54.9
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1559.7 1492 54.6
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1544.3 1515 54.0
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1534.2 1465 55.4
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1530.0 1481 54.5
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1508.8 1508 52.5
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1491.5 1502 52.4
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1481.8 1495 52.6
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1467.6 1504 52.2
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1459.5 1509 51.8
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1451.4 1498 51.1
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1451.0 1495 51.8
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1432.5 1541 50.0
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1417.5 1493 51.0
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1416.0 1491 50.0
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1412.5 1514 49.5
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1411.4 1503 49.3
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1409.0 1503 50.8
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1406.7 1501 51.3
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1404.0 1502 50.3
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1400.6 1503 49.2
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1399.4 1509 49.4
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1399.4 1499 50.0
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1398.3 1500 50.6
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1397.5 1498 49.6
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1395.9 1517 49.4
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1394.8 1460 50.5
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1391.3 1503 49.6
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1391.3 1499 49.7
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1389.4 1499 50.0
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1389.0 1503 50.3
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1387.5 1503 49.5
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1385.9 1498 50.1
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1378.6 1594 48.1
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1375.9 1509 49.2
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1374.8 1131 63.7
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1374.0 1509 48.8
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1366.3 1519 48.9
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1366.3 1519 48.9
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1362.4 1506 49.4
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1360.5 1509 48.5
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1353.6 1500 49.0
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1353.2 1510 47.6
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1350.9 1494 49.2
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1350.5 1482 48.5
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1347.0 1491 48.6
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1345.5 1480 47.8
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1336.6 1505 47.0
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1328.2 1433 49.9
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1326.6 1484 48.6
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1318.1 1513 47.7
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1316.6 1509 47.2
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1302.3 1525 46.1
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1285.8 1372 51.7
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1246.5 1294 50.6
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1229.9 1436 45.9
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1216.1 1515 45.0
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1216.1 1504 45.1
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1213.4 1497 44.8
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1212.2 1202 53.7
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1208.4 1505 46.1
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1205.3 1522 45.1
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1201.8 1509 44.5
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1199.9 1509 44.2
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1198.3 1505 44.0
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1194.9 1096 57.2
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1190.6 1507 43.3
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1190.3 1748 39.7
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1186.8 1503 43.7
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1186.8 1223 51.4
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1184.9 1502 43.7
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1180.6 1504 43.6
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1171.8 1530 42.9
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1168.7 1498 44.2
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1164.1 1534 42.7
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1161.4 1526 43.4
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1154.8 1507 43.6
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1152.9 1483 45.9
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1151.0 998 58.8
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 1.0e-311 1073.9 1287 46.2
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 2.6e-310 1069.3 1153 49.6
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 1.3e-309 1067.0 1501 41.0
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 1.9e-308 1063.1 980 57.1
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-275 954.1 1121 46.8
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.3e-237 827.8 1112 41.7
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.0e-233 813.9 1140 39.9
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 5.7e-212 742.7 1526 32.6
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 4.8e-211 739.6 1534 33.0
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 6.3e-211 739.2 1524 33.9
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.1e-210 738.4 969 41.8
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 6.3e-203 712.6 977 42.1
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.1e-194 683.7 599 57.6
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 3.7e-179 633.6 1033 38.7
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 9.1e-178 629.0 1034 38.7
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 1.1e-175 622.1 1035 38.5
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 5.2e-173 613.2 1051 40.8
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 2.2e-171 607.8 640 50.0
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 5.5e-167 593.2 575 55.0
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 2.3e-165 587.8 585 53.5
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.4e-162 577.8 1384 29.8
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 2.3e-157 561.2 582 52.1
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 6.8e-157 559.7 560 53.4
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 4.7e-134 483.8 563 46.7
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.6e-126 457.6 559 47.6
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 8.9e-125 453.0 476 51.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.9e-119 435.3 791 36.7
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.4e-111 406.8 481 46.6
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-103 382.5 987 29.1
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 2.5e-90 338.6 500 40.2
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 5.0e-83 314.3 447 42.3
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.3e-78 299.7 439 40.1
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 6.1e-73 280.8 375 44.5
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 2.3e-72 278.9 297 47.8
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.2e-72 277.7 318 45.6
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.3e-71 275.0 536 32.3
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.1e-69 270.0 442 35.7
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 2.2e-67 262.3 301 47.5
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 3.8e-67 261.5 367 40.3
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 6.7e-64 250.8 381 39.9
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 2.8e-62 245.4 393 39.4
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 5.3e-61 241.1 209 55.0
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 6.5e-59 234.2 322 38.8
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.1e-57 229.2 359 35.7
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.0e-56 226.9 257 46.3
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.2e-52 213.4 153 64.7
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.2e-52 213.4 249 49.0
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.5e-47 196.4 156 59.0
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 8.3e-46 190.7 254 43.3
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.9e-43 182.2 210 48.1
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 8.6e-43 180.6 318 37.7
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.3e-40 172.6 130 62.3
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 1.3e-38 166.8 122 63.9
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 8.3e-38 164.1 355 31.5
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 1.1e-37 163.7 278 35.6
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 3.0e-35 155.6 176 48.9
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.8e-33 149.1 109 63.3
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.2e-31 143.7 123 54.5
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 2.0e-31 142.9 151 49.0
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 7.5e-31 141.0 116 63.8
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 9.8e-31 140.6 193 40.4
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 9.8e-31 140.6 315 32.1
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 9.8e-31 140.6 196 40.8
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 2.4e-29 136.0 187 40.1
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 8.6e-27 127.5 117 52.1
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 6.4e-14 84.7 270 24.4
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.0e-11 75.9 55 65.5
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 3.3e-10 72.4 189 30.7
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 4.3e-10 72.0 98 42.9
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 2.1e-09 69.7 98 41.8
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 6.9e-08 64.7 42 69.0
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 1.2e-07 63.9 178 29.2
SEGI_12379 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.7e-06 60.1 65 43.1


User provided reference genes

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