Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 4.6e-169 597.8 305 100.0
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 2.3e-128 462.6 302 78.8
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 1.2e-127 460.3 305 78.4
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 2.0e-127 459.5 305 78.4
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.5e-119 433.3 305 75.1
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 4.5e-116 421.8 302 73.2
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 5.9e-116 421.4 302 73.2
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 5.9e-116 421.4 300 72.7
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.9e-115 419.1 305 72.8
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 3.8e-115 418.7 307 71.0
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 8.6e-115 417.5 300 73.3
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 8.6e-115 417.5 300 72.7
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 3.3e-114 415.6 300 72.7
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 4.3e-114 415.2 300 72.7
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 4.3e-114 415.2 339 67.0
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.2e-113 413.7 311 70.4
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 1.6e-113 413.3 305 72.5
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 2.8e-113 412.5 305 71.1
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 3.6e-113 412.1 305 71.1
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 4.7e-113 411.8 306 72.5
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 4.0e-112 408.7 301 71.4
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 4.0e-112 408.7 300 72.7
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 5.2e-112 408.3 295 72.5
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 2.0e-111 406.4 296 72.0
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 3.4e-111 405.6 301 70.1
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 4.4e-111 405.2 298 71.1
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 7.5e-111 404.4 302 68.9
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 7.5e-111 404.4 304 70.4
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 1.3e-110 403.7 301 70.1
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 2.2e-110 402.9 299 71.6
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 4.9e-110 401.7 303 71.9
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 1.1e-109 400.6 299 71.2
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 7.0e-109 397.9 300 68.7
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.2e-108 397.1 307 70.0
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 2.7e-108 396.0 297 69.4
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 1.7e-107 393.3 317 66.2
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 3.0e-107 392.5 305 68.5
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 3.0e-107 392.5 301 70.1
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 3.9e-107 392.1 301 67.4
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 5.0e-107 391.7 302 68.2
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 6.6e-107 391.3 317 65.9
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 6.6e-107 391.3 299 69.2
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 8.6e-107 391.0 301 69.8
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 8.6e-107 391.0 293 68.6
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.5e-106 390.2 300 71.3
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.5e-106 390.2 307 69.4
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 1.5e-106 390.2 301 68.8
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 3.3e-106 389.0 302 68.2
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 4.3e-106 388.7 301 68.1
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 9.5e-106 387.5 300 67.3
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 1.2e-105 387.1 305 68.9
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.6e-105 386.7 296 72.0
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 1.6e-105 386.7 369 57.7
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 1.6e-105 386.7 355 61.1
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 4.7e-105 385.2 334 65.0
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 6.2e-105 384.8 296 68.9
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.0e-104 384.0 296 69.6
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.8e-104 383.3 301 67.4
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 2.3e-104 382.9 304 66.1
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 4.0e-104 382.1 296 69.3
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 1.2e-103 380.6 307 67.8
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 1.5e-103 380.2 293 70.0
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 1.5e-103 380.2 288 72.6
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 2.0e-103 379.8 316 64.9
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 2.0e-103 379.8 304 66.1
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.4e-103 379.0 304 66.1
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 2.2e-102 376.3 301 68.1
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 2.2e-102 376.3 301 68.1
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 2.2e-102 376.3 343 61.2
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.1e-101 374.0 317 64.4
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 5.4e-101 371.7 301 67.8
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 2.7e-100 369.4 306 64.7
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 1.3e-99 367.1 282 68.1
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 1.5e-98 363.6 327 63.0
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 1.5e-98 363.6 280 69.3
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.9e-98 363.2 296 67.6
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.4e-96 357.1 230 78.7
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.3e-94 350.5 300 64.7
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.3e-94 350.5 279 68.8
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.7e-94 349.0 372 54.0
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 3.7e-94 349.0 253 71.9
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 4.9e-94 348.6 330 59.4
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 1.1e-93 347.4 254 72.4
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 4.1e-93 345.5 303 63.4
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 1.6e-92 343.6 307 63.5
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.0e-91 340.9 304 63.2
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 8.6e-91 337.8 257 71.6
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 1.9e-90 336.7 255 70.6
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 9.5e-90 334.3 234 73.5
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 2.1e-89 333.2 262 68.7
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 1.4e-88 330.5 260 70.8
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 6.8e-88 328.2 260 65.0
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 3.4e-87 325.9 252 67.5
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 1.3e-86 323.9 208 78.4
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.2e-86 323.2 373 52.5
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 2.2e-86 323.2 320 56.2
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 8.4e-86 321.2 245 70.2
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 1.4e-85 320.5 306 60.1
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 3.2e-85 319.3 311 60.8
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 7.1e-85 318.2 202 78.7
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 7.1e-85 318.2 204 77.0
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 7.8e-84 314.7 207 76.8
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.7e-83 313.5 257 65.0
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.3e-83 313.2 324 55.6
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 1.9e-82 310.1 256 66.0
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 5.6e-82 308.5 283 61.8
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 9.9e-79 297.7 252 66.3
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 3.8e-78 295.8 181 82.3
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 4.2e-77 292.4 245 66.1
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 3.5e-76 289.3 306 54.2
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 8.7e-75 284.6 243 64.2
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 8.7e-75 284.6 260 60.4
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 2.4e-72 276.6 301 54.8
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 2.4e-72 276.6 245 62.0
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 4.0e-72 275.8 296 54.4
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.7e-70 270.4 294 54.8
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 2.1e-68 263.5 201 66.2
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.7e-68 263.1 247 58.7
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 2.4e-64 250.0 165 75.8
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.2e-63 247.7 274 54.4
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 9.9e-63 244.6 342 47.4
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 1.9e-58 230.3 155 75.5
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 3.9e-51 206.1 153 69.3
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 1.5e-47 194.1 130 76.2
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 4.5e-31 139.4 154 53.2
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 1.2e-28 131.3 329 34.7
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 5.2e-27 125.9 305 32.8
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 1.7e-17 94.4 80 63.8
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 8.2e-17 92.0 331 29.3
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 4.7e-12 76.3 60 60.0
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 8.8e-11 72.0 80 50.0
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 8.3e-09 65.5 52 67.3
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 5.4e-08 62.8 53 64.2
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 6.5e-06 55.8 71 47.9


User provided reference genes

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