Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.3e-225 786.2 421 100.0
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 2.6e-194 682.2 427 82.2
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 3.1e-163 578.9 433 71.4
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 8.6e-158 560.8 429 70.9
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 6.9e-155 551.2 434 68.9
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 7.9e-143 511.1 433 65.6
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 2.4e-136 489.6 446 62.3
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.2e-135 487.3 432 64.4
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.0e-134 484.2 431 64.0
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 3.0e-134 482.6 431 64.3
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 2.1e-132 476.5 433 62.4
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 4.8e-132 475.3 433 62.1
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 1.8e-131 473.4 413 61.5
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 6.9e-131 471.5 432 62.3
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 2.6e-130 469.5 436 62.6
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 5.8e-130 468.4 438 61.0
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 1.4e-128 463.8 441 59.0
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 4.6e-127 458.8 419 62.8
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 5.7e-125 451.8 434 60.4
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.8e-124 448.7 433 58.0
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 2.6e-122 443.0 440 58.6
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 7.6e-122 441.4 441 59.0
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 1.1e-120 437.6 440 56.8
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.4e-120 437.2 440 60.7
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 4.2e-120 435.6 394 61.4
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.2e-119 434.1 435 57.5
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.1e-119 433.3 437 60.2
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.7e-119 433.0 427 58.1
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.6e-119 432.6 427 58.1
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 7.4e-117 424.9 428 59.1
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 9.7e-117 424.5 434 56.2
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 9.7e-117 424.5 403 59.3
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.3e-116 424.1 415 60.5
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.2e-116 423.3 420 58.3
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.7e-116 422.5 426 57.3
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 4.8e-116 422.2 408 59.3
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 6.3e-116 421.8 421 56.5
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 6.3e-116 421.8 307 69.1
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 6.3e-116 421.8 414 59.9
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 8.2e-116 421.4 404 61.1
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 3.1e-115 419.5 404 58.7
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 4.1e-115 419.1 396 58.1
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.3e-115 418.7 404 58.7
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 6.9e-115 418.3 436 57.8
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 9.1e-115 417.9 407 59.5
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 1.5e-114 417.2 416 56.0
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 2.0e-114 416.8 421 54.4
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.6e-114 416.4 402 58.2
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 1.3e-113 414.1 400 59.5
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.3e-113 414.1 402 58.0
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.3e-113 414.1 427 54.3
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.2e-113 413.3 396 59.6
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 3.8e-113 412.5 418 56.2
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 3.8e-113 412.5 419 59.9
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 5.0e-113 412.1 402 60.7
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 5.0e-113 412.1 413 59.3
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 6.5e-113 411.8 424 56.1
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.1e-112 411.0 406 60.6
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.4e-112 410.6 427 58.5
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.4e-112 410.6 427 57.1
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.5e-112 409.8 410 58.8
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 4.2e-112 409.1 403 60.0
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 4.2e-112 409.1 409 57.0
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 5.5e-112 408.7 420 55.2
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 5.5e-112 408.7 403 57.1
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 1.2e-111 407.5 409 56.7
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.2e-111 407.5 429 52.7
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.6e-111 407.1 407 57.2
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 6.1e-111 405.2 310 67.1
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 7.9e-111 404.8 414 55.6
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.9e-111 404.8 396 57.8
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.0e-110 404.4 421 59.1
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 1.4e-110 404.1 416 57.2
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 1.4e-110 404.1 418 61.0
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.8e-110 403.7 398 60.1
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.8e-110 403.7 403 57.6
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.8e-110 403.7 435 55.6
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.3e-110 403.3 418 57.9
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 5.1e-110 402.1 396 59.8
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 5.1e-110 402.1 397 58.7
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 5.1e-110 402.1 413 56.4
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 8.8e-110 401.4 397 58.4
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 8.8e-110 401.4 400 54.2
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 8.8e-110 401.4 400 54.5
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.1e-109 401.0 402 58.7
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.6e-109 399.8 396 57.3
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 2.6e-109 399.8 405 58.3
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.3e-108 397.5 391 56.3
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 1.7e-108 397.1 319 66.5
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 2.2e-108 396.7 417 55.6
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 2.8e-108 396.4 417 55.4
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 6.3e-108 395.2 412 57.8
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 6.3e-108 395.2 396 56.8
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 6.3e-108 395.2 320 65.6
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.4e-107 394.0 394 56.1
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.4e-107 394.0 402 56.7
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.4e-107 394.0 398 54.0
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.4e-107 393.3 411 56.4
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 3.1e-107 392.9 314 66.6
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.1e-107 392.9 406 53.0
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 5.3e-107 392.1 405 53.6
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 6.9e-107 391.7 397 53.9
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 6.9e-107 391.7 406 53.2
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.2e-106 391.0 408 53.9
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 2.0e-106 390.2 395 54.9
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 3.4e-106 389.4 397 56.2
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 4.5e-106 389.0 401 55.6
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 4.5e-106 389.0 411 53.0
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.3e-105 387.5 399 56.4
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 2.9e-105 386.3 401 54.6
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 8.5e-105 384.8 396 54.3
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.1e-104 384.4 408 53.9
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 1.4e-104 384.0 401 56.6
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 3.2e-104 382.9 399 54.9
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 9.4e-104 381.3 398 55.8
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 9.4e-104 381.3 395 54.9
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.2e-103 380.9 309 64.7
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.6e-103 380.6 392 53.6
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 1.6e-103 380.6 362 57.7
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.6e-103 380.6 440 49.8
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 8.0e-103 378.3 397 54.7
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 1.0e-102 377.9 396 52.0
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.3e-102 376.7 230 78.3
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 3.9e-102 375.9 379 57.3
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 3.9e-102 375.9 401 55.6
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.1e-101 374.4 343 59.8
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 2.6e-101 373.2 312 65.1
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 4.4e-101 372.5 428 52.6
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 1.7e-100 370.5 312 63.8
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.8e-100 369.8 311 62.4
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 3.7e-100 369.4 406 51.5
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 8.2e-100 368.2 406 56.2
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 4.1e-99 365.9 400 54.2
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 5.3e-99 365.5 442 49.8
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.2e-98 364.4 413 57.6
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.3e-97 360.9 403 53.8
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 3.8e-97 359.4 397 55.2
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 3.2e-96 356.3 407 55.8
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 7.2e-96 355.1 230 75.7
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.2e-95 354.4 410 49.3
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.3e-92 344.4 314 58.6
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 2.2e-92 343.6 308 58.8
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 2.2e-92 343.6 421 53.0
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.8e-91 340.5 327 56.0
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 1.4e-86 324.3 378 52.6
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 6.1e-79 298.9 310 51.0
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.3e-76 291.2 192 76.0
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 4.1e-75 286.2 297 49.5
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.8e-73 279.6 372 46.2
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.2e-71 274.6 390 45.6
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 6.8e-70 268.9 403 38.5
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.9e-51 207.6 240 46.7
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 7.3e-48 195.7 117 82.1
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 2.6e-45 187.2 318 42.5
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 2.2e-44 184.1 117 77.8
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 6.4e-44 182.6 178 53.9
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 2.1e-42 177.6 117 71.8
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.9e-40 171.0 194 45.4
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 7.1e-35 152.5 99 71.7
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 1.9e-27 127.9 252 33.7
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.2e-27 127.1 99 61.6
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 7.6e-21 105.9 69 68.1
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.3e-20 105.1 59 84.7
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.3e-20 105.1 59 84.7
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 2.5e-19 100.9 70 61.4
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 4.6e-18 96.7 51 88.2
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 3.9e-17 93.6 86 55.8
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 3.3e-16 90.5 248 29.0
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 9.6e-16 89.0 134 41.0
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 7.6e-13 79.3 52 73.1
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 6.5e-12 76.3 55 61.8
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.9e-09 67.0 139 34.5
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.9e-09 67.0 139 34.5


User provided reference genes

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