Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 8.8e-103 377.1 210 100.0
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 2.8e-56 222.6 144 93.8
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.4e-55 220.3 145 89.7
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 5.8e-54 214.9 152 82.2
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 7.6e-54 214.5 145 89.7
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 2.2e-53 213.0 159 78.6
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.2e-53 213.0 154 82.5
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 3.8e-53 212.2 149 81.9
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-52 210.7 115 93.0
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.4e-52 210.3 160 80.0
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.4e-52 210.3 160 80.0
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 5.4e-52 208.4 153 82.4
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.1e-51 206.5 150 82.0
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 2.1e-51 206.5 152 80.3
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.7e-51 206.1 155 81.3
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 2.7e-51 206.1 152 80.9
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.5e-51 205.7 159 78.6
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 3.5e-51 205.7 154 81.2
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 4.6e-51 205.3 154 80.5
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 4.6e-51 205.3 157 80.3
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 7.8e-51 204.5 162 75.3
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.0e-50 204.1 156 80.1
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.3e-50 203.8 156 80.1
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.3e-50 203.8 148 73.6
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 1.7e-50 203.4 150 79.3
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 2.3e-50 203.0 157 78.3
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.3e-50 203.0 168 74.4
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 2.3e-50 203.0 149 79.9
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 3.0e-50 202.6 148 80.4
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 3.9e-50 202.2 154 79.9
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 6.6e-50 201.4 146 80.1
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 6.6e-50 201.4 155 78.7
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-49 200.7 108 94.4
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.5e-49 200.3 154 76.6
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.5e-49 200.3 175 70.3
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.9e-49 199.9 169 73.4
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.9e-49 199.9 162 72.8
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 2.5e-49 199.5 153 79.1
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 4.3e-49 198.7 154 78.6
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 5.6e-49 198.4 155 77.4
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 5.6e-49 198.4 168 73.2
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 5.6e-49 198.4 155 78.1
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 5.6e-49 198.4 167 72.5
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 5.6e-49 198.4 155 77.4
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 5.6e-49 198.4 167 74.3
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 7.3e-49 198.0 154 76.0
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.3e-49 198.0 108 93.5
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 7.3e-49 198.0 161 72.7
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.6e-49 197.6 108 93.5
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.3e-48 197.2 162 75.9
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-48 197.2 108 92.6
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.6e-48 196.8 154 78.6
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 2.1e-48 196.4 146 80.8
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 2.8e-48 196.1 150 80.7
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 2.8e-48 196.1 152 79.6
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.8e-48 196.1 108 92.6
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 2.8e-48 196.1 154 74.0
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.6e-48 195.7 170 71.2
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 3.6e-48 195.7 107 93.5
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.6e-48 195.7 108 92.6
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 4.8e-48 195.3 155 76.1
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.8e-48 195.3 160 76.9
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.2e-48 194.9 160 73.8
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 6.2e-48 194.9 152 78.9
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 6.2e-48 194.9 152 78.9
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 8.1e-48 194.5 153 75.8
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.1e-47 194.1 157 77.7
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.4e-47 193.7 138 82.6
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.4e-47 193.7 108 91.7
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 1.4e-47 193.7 148 76.4
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 2.4e-47 193.0 155 76.1
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 2.4e-47 193.0 151 75.5
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 3.1e-47 192.6 156 74.4
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.1e-47 192.6 160 75.0
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 3.1e-47 192.6 146 82.9
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 4.0e-47 192.2 156 73.7
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 4.0e-47 192.2 150 80.0
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 5.3e-47 191.8 164 75.0
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 5.3e-47 191.8 152 79.6
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 6.9e-47 191.4 160 74.4
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.9e-47 191.4 160 74.4
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 9.0e-47 191.0 119 84.9
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 9.0e-47 191.0 156 74.4
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.2e-46 190.7 120 80.8
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.2e-46 190.7 119 82.4
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.2e-46 190.7 144 70.1
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.5e-46 190.3 120 81.7
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 1.5e-46 190.3 167 72.5
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.5e-46 190.3 161 76.4
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 1.5e-46 190.3 156 74.4
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.0e-46 189.9 120 80.0
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.0e-46 189.9 159 73.0
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.6e-46 189.5 118 83.1
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 2.6e-46 189.5 118 83.1
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 2.6e-46 189.5 118 83.1
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 4.5e-46 188.7 156 73.7
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 5.8e-46 188.3 156 73.7
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 5.8e-46 188.3 149 78.5
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 5.8e-46 188.3 168 69.0
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 9.9e-46 187.6 156 73.1
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 1.3e-45 187.2 120 80.0
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.7e-45 186.8 159 74.8
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 2.2e-45 186.4 168 69.6
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 2.2e-45 186.4 168 69.6
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 2.9e-45 186.0 156 72.4
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 2.9e-45 186.0 156 72.4
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 2.9e-45 186.0 156 72.4
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 3.8e-45 185.7 156 73.1
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 3.8e-45 185.7 157 72.0
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 3.8e-45 185.7 156 72.4
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 3.8e-45 185.7 157 72.0
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 3.8e-45 185.7 157 72.0
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 3.8e-45 185.7 120 81.7
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 4.9e-45 185.3 156 72.4
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.9e-45 185.3 153 74.5
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 6.4e-45 184.9 156 72.4
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 6.4e-45 184.9 158 77.2
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 8.4e-45 184.5 117 82.9
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.1e-44 184.1 120 79.2
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.9e-44 183.3 156 71.8
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.9e-44 183.3 156 71.8
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.9e-44 183.3 116 81.9
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.9e-44 183.3 158 67.7
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 4.2e-44 182.2 156 71.2
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 4.2e-44 182.2 120 78.3
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 4.2e-44 182.2 148 68.2
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 4.2e-44 182.2 167 67.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 5.4e-44 181.8 156 71.2
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 5.4e-44 181.8 156 71.2
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 5.4e-44 181.8 156 71.2
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 5.4e-44 181.8 183 57.9
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 7.1e-44 181.4 154 76.0
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 7.1e-44 181.4 120 77.5
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.2e-43 180.6 119 78.2
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.1e-43 179.9 140 82.9
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.0e-42 177.6 162 69.1
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 3.7e-40 169.1 113 80.5
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 9.0e-39 164.5 167 65.9
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 1.2e-38 164.1 112 78.6
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 2.6e-38 162.9 167 65.9
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.3e-37 160.6 209 50.2
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.7e-37 160.2 137 76.6
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 5.5e-36 155.2 120 70.0
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 7.1e-36 154.8 151 66.9
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 4.6e-35 152.1 157 64.3
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 7.9e-35 151.4 157 61.1
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 1.9e-33 146.7 153 66.7
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 5.7e-33 145.2 152 65.1
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.7e-27 126.3 115 60.9
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 6.7e-26 121.7 154 61.0
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.9e-22 108.6 160 54.4
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.4e-20 104.0 150 54.0
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 6.7e-18 95.1 155 48.4
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-17 94.4 116 62.1
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.3e-16 88.6 44 95.5
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.4e-15 86.7 73 69.9
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 2.9e-13 79.7 53 73.6
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 3.3e-09 66.2 64 59.4
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-07 61.2 82 48.8
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 9.1e-07 58.2 71 67.6
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.2e-06 57.8 88 44.3
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 2.0e-06 57.0 151 38.4


User provided reference genes

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