Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04401 Striga asiatica HOM05D001529 ORTHO05D399536 6.0e-88 327.4 158 100.0
SGA_v2.0_scaffold49G18408 Striga asiatica HOM05D001529 ORTHO05D007595 1.0e-23 114.0 61 85.2
AL3G42430 Arabidopsis lyrata HOM05D001529 ORTHO05D007595 1.4e-23 113.6 61 85.2
AT2G04842 Arabidopsis thaliana HOM05D001529 ORTHO05D007595 1.4e-23 113.6 61 85.2
C03p55280 Brassica napus HOM05D001529 ORTHO05D007595 1.4e-23 113.6 61 85.2
BolC3t17800H Brassica oleracea HOM05D001529 ORTHO05D007595 1.4e-23 113.6 61 85.2
BraA03t13580Z Brassica rapa HOM05D001529 ORTHO05D007595 1.4e-23 113.6 61 85.2
Carub.0003s2643 Capsella rubella HOM05D001529 ORTHO05D007595 1.4e-23 113.6 61 85.2
Hma1.2p1_0405F.1_g145720 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 2.3e-23 112.8 61 83.6
MSTRG.12244 Avicennia marina HOM05D001529 ORTHO05D007595 3.1e-23 112.5 61 85.2
A03p44470 Brassica napus HOM05D001529 ORTHO05D007595 3.1e-23 112.5 61 83.6
CARHR102830 Cardamine hirsuta HOM05D001529 ORTHO05D007595 3.1e-23 112.5 61 83.6
Migut.H01288 Erythranthe guttata HOM05D001529 ORTHO05D007595 3.1e-23 112.5 61 83.6
Thhalv10002438m.g Eutrema salsugineum HOM05D001529 ORTHO05D007595 3.1e-23 112.5 61 83.6
Sp3g23420 Schrenkiella parvula HOM05D001529 ORTHO05D007595 3.1e-23 112.5 61 83.6
THA.LOC104815352 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 3.1e-23 112.5 61 83.6
THA.LOC104826614 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 3.1e-23 112.5 61 83.6
BcaB08g34492 Brassica carinata HOM05D001529 ORTHO05D007595 4.0e-23 112.1 61 82.0
Ca_16364_v3 Cicer arietinum L. HOM05D001529 ORTHO05D007595 4.0e-23 112.1 68 76.5
Duzib138G1061 Durio zibethinus HOM05D001529 ORTHO05D007595 4.0e-23 112.1 61 83.6
Lj6g0006977 Lotus japonicus HOM05D001529 ORTHO05D007595 4.0e-23 112.1 68 76.5
Phvul.009G238000 Phaseolus vulgaris HOM05D001529 ORTHO05D007595 4.0e-23 112.1 68 76.5
Cc00_g04140 Coffea canephora HOM05D001529 ORTHO05D007595 5.2e-23 111.7 61 82.0
MBI19_g06153_MAGBIO Magnolia biondii HOM05D001529 ORTHO05D007595 5.2e-23 111.7 61 82.0
Nn1g03283 Nelumbo nucifera HOM05D001529 ORTHO05D007595 5.2e-23 111.7 61 82.0
Psat5g104480 Pisum sativum HOM05D001529 ORTHO05D007595 5.2e-23 111.7 68 76.5
Solyc07g048080.4 Solanum lycopersicum HOM05D001529 ORTHO05D007595 5.2e-23 111.7 61 82.0
Sopen07g024500 Solanum pennellii HOM05D001529 ORTHO05D007595 5.2e-23 111.7 61 82.0
TWI36G1606 Tripterygium wilfordii HOM05D001529 ORTHO05D007595 5.2e-23 111.7 61 82.0
GSVIVG01030033001 Vitis vinifera HOM05D001529 ORTHO05D007595 5.2e-23 111.7 61 82.0
Atru.chr6.3341 Acer truncatum HOM05D001529 ORTHO05D007595 6.8e-23 111.3 68 76.5
Eucgr.A01064 Eucalyptus grandis HOM05D001529 ORTHO05D007595 6.8e-23 111.3 61 82.0
PSO541G2760 Papaver somniferum HOM05D001529 ORTHO05D007595 6.8e-23 111.3 61 82.0
PSO675G8054 Papaver somniferum HOM05D001529 ORTHO05D007595 6.8e-23 111.3 61 82.0
Sabra14G0123900 Salix brachista HOM05D001529 ORTHO05D007595 6.8e-23 111.3 61 80.3
Glyma.19G191200 Glycine max HOM05D001529 ORTHO05D007595 8.9e-23 110.9 68 75.0
Gohir.A07G167800 Gossypium hirsutum HOM05D001529 ORTHO05D007595 8.9e-23 110.9 61 82.0
Gohir.D07G173400 Gossypium hirsutum HOM05D001529 ORTHO05D007595 8.9e-23 110.9 61 82.0
Gorai.001G193700 Gossypium raimondii HOM05D001529 ORTHO05D007595 8.9e-23 110.9 61 82.0
vmacro09386 Vaccinium macrocarpon HOM05D001529 ORTHO05D007595 8.9e-23 110.9 61 82.0
arahy.Tifrunner.gnm1.ann1.TVN328 Arachis hypogaea HOM05D001529 ORTHO05D007595 1.2e-22 110.5 61 80.3
Lsat_1_v5_gn_5_123180 Lactuca sativa HOM05D001529 ORTHO05D007595 1.2e-22 110.5 61 80.3
Lalb_Chr14g0362561 Lupinus albus HOM05D001529 ORTHO05D007595 1.2e-22 110.5 61 80.3
Medtr3g083180 Medicago truncatula HOM05D001529 ORTHO05D007595 1.2e-22 110.5 68 75.0
Potri.014G162200 Populus trichocarpa HOM05D001529 ORTHO05D007595 1.2e-22 110.5 61 78.7
QL08p028982 Quercus lobata HOM05D001529 ORTHO05D007595 1.2e-22 110.5 61 80.3
QL93p0116_0063 Quercus lobata HOM05D001529 ORTHO05D007595 1.2e-22 110.5 61 80.3
TPR.G19324 Trifolium pratense HOM05D001529 ORTHO05D007595 1.2e-22 110.5 68 75.0
GSVIVG01030028001 Vitis vinifera HOM05D001529 ORTHO05D007595 1.2e-22 110.5 61 82.0
Actinidia21451 Actinidia chinensis HOM05D001529 ORTHO05D007595 1.5e-22 110.2 61 80.3
arahy.Tifrunner.gnm1.ann1.6FNM9R Arachis hypogaea HOM05D001529 ORTHO05D007595 1.5e-22 110.2 61 80.3
arahy.Tifrunner.gnm1.ann1.9BA4YH Arachis hypogaea HOM05D001529 ORTHO05D007595 1.5e-22 110.2 61 80.3
Dinv07847 Davidia involucrata HOM05D001529 ORTHO05D007595 1.5e-22 110.2 59 83.1
ECA234G3620 Erigeron canadensis HOM05D001529 ORTHO05D007595 1.5e-22 110.2 61 78.7
Thecc.01G188800 Theobroma cacao HOM05D001529 ORTHO05D007595 1.5e-22 110.2 61 80.3
TAR626G0907 Trochodendron aralioides HOM05D001529 ORTHO05D007595 1.5e-22 110.2 59 83.1
Aa31sc53G50 Aethionema arabicum HOM05D001529 ORTHO05D007595 2.0e-22 109.8 61 82.0
ClCG02G002590 Citrullus lanatus HOM05D001529 ORTHO05D007595 2.0e-22 109.8 61 78.7
CsaV3_7G002750 Cucumis sativus L. HOM05D001529 ORTHO05D007595 2.0e-22 109.8 61 78.7
HanXRQChr10g0306381 Helianthus annuus HOM05D001529 ORTHO05D007595 2.0e-22 109.8 61 78.7
PGR042G1774 Punica granatum HOM05D001529 ORTHO05D007595 2.0e-22 109.8 61 80.3
Sed0023062 Sechium edule HOM05D001529 ORTHO05D007595 2.0e-22 109.8 61 78.7
Aqoxy4G02192 Aquilegia oxysepala HOM05D001529 ORTHO05D007595 2.6e-22 109.4 61 82.0
Haze_12706 Corylus avellana HOM05D001529 ORTHO05D007595 2.6e-22 109.4 61 80.3
Manes.12G062800 Manihot esculenta HOM05D001529 ORTHO05D007595 2.6e-22 109.4 61 80.3
ATR0712G164 Amborella trichopoda HOM05D001529 ORTHO05D007595 3.4e-22 109.0 61 78.7
Glyma.U010902 Glycine max HOM05D001529 ORTHO05D007595 3.4e-22 109.0 68 73.5
VMungo1080G0307 Vigna mungo HOM05D001529 ORTHO05D007595 3.4e-22 109.0 68 76.5
Zm00001eb325920 Zea mays HOM05D001529 ORTHO05D007595 3.4e-22 109.0 61 78.7
CANSAT64G0296 Cannabis sativa HOM05D001529 ORTHO05D007595 4.4e-22 108.6 61 78.7
MELO3C024216.2 Cucumis melo HOM05D001529 ORTHO05D007595 4.4e-22 108.6 61 77.0
Rhsim04G0043200 Rhododendron simsii HOM05D001529 ORTHO05D007595 4.4e-22 108.6 61 78.7
Sc20g0003910 Simmondsia chinensis HOM05D001529 ORTHO05D007595 4.4e-22 108.6 61 78.7
CiPaw.03G277800 Carya illinoinensis HOM05D001529 ORTHO05D007595 5.8e-22 108.2 59 81.4
DCAR_021112 Daucus carota HOM05D001529 ORTHO05D007595 7.5e-22 107.8 61 80.3
Lj1C790T8 Lonicera japonica HOM05D001529 ORTHO05D007595 7.5e-22 107.8 61 78.7
Os02g0538000 Oryza sativa ssp. japonica HOM05D001529 ORTHO05D007595 7.5e-22 107.8 61 78.7
CSS0013229 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 1.3e-21 107.1 61 77.0
CDE07G1746 Ceratophyllum demersum HOM05D001529 ORTHO05D007595 1.7e-21 106.7 61 77.0
Ah.06g192740 Amaranthus hybridus HOM05D001529 ORTHO05D007595 3.7e-21 105.5 61 78.7
HPP92_022799 Vanilla planifolia HOM05D001529 ORTHO05D007595 3.7e-21 105.5 61 77.0
MD09G1120400 Malus domestica HOM05D001529 ORTHO05D007595 4.9e-21 105.1 76 68.4
Prupe.3G203100 Prunus persica HOM05D001529 ORTHO05D007595 4.9e-21 105.1 61 77.0
Hund24142 Selenicereus undatus HOM05D001529 ORTHO05D007595 4.9e-21 105.1 61 75.4
EL10Ac4g09205 Beta vulgaris HOM05D001529 ORTHO05D007595 1.1e-20 104.0 61 75.4
FvH4_6g41340 Fragaria vesca HOM05D001529 ORTHO05D007595 1.4e-20 103.6 61 75.4
FAN05G0710 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.4e-20 103.6 61 75.4
FAN09G0877 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.4e-20 103.6 61 75.4
FAN14G1621 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.4e-20 103.6 61 75.4
RcHm_v2.0_Chr2g0156891 Rosa chinensis HOM05D001529 ORTHO05D007595 1.4e-20 103.6 61 75.4
SEGI_09505 Sequoiadendron giganteum HOM05D001529 ORTHO05D007595 1.4e-20 103.6 68 73.5
Peaxi162Scf02035g00017 Petunia axillaris HOM05D001529 ORTHO05D007595 2.4e-20 102.8 73 68.5
PGSC0003DMG400006139 Solanum tuberosum HOM05D001529 ORTHO05D007595 3.2e-20 102.4 61 78.7
unitig_62.g23257 Utricularia gibba HOM05D001529 ORTHO05D007595 4.1e-20 102.1 61 75.4
CSS0037422 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 7.0e-20 101.3 95 55.8
CSS0041772 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 7.0e-20 101.3 95 55.8
AUR62000956 Chenopodium quinoa HOM05D001529 ORTHO05D007595 7.0e-20 101.3 61 72.1
AUR62005012 Chenopodium quinoa HOM05D001529 ORTHO05D007595 7.0e-20 101.3 61 72.1
CBR_g3851 Chara braunii HOM05D001529 ORTHO05D007595 2.0e-19 99.8 61 75.4
Eucgr.A01066 Eucalyptus grandis HOM05D001529 ORTHO05D007595 3.5e-19 99.0 68 70.6
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 1.7e-18 96.7 61 70.5
Pp3c14_20630 Physcomitrium patens HOM05D001529 ORTHO05D007595 2.3e-18 96.3 61 72.1
Pp3c2_11130 Physcomitrium patens HOM05D001529 ORTHO05D007595 2.3e-18 96.3 61 70.5
Mapoly0096s0034 Marchantia polymorpha HOM05D001529 ORTHO05D007595 3.9e-18 95.5 61 72.1
Eucgr.A01062 Eucalyptus grandis HOM05D001529 ORTHO05D007595 1.2e-16 90.5 52 80.8
MCO11G246 Micromonas commoda HOM05D001529 ORTHO05D007595 8.1e-16 87.8 62 66.1
PRCOL_00005026 Prasinoderma coloniale HOM05D001529 ORTHO05D007595 4.4e-14 82.0 62 64.5
SGA_v2.0_scaffold170G38818 Striga asiatica HOM05D001529 ORTHO05D404896 4.4e-14 82.0 47 78.7
SGA_v2.0_scaffold97G29159 Striga asiatica HOM05D001529 ORTHO05D401536 9.8e-14 80.9 50 78.0
Cre10.g421600 Chlamydomonas reinhardtii HOM05D001529 ORTHO05D007595 2.2e-13 79.7 61 54.1
Ciclev10018290m.g Citrus clementina HOM05D001529 ORTHO05D007595 2.2e-13 79.7 83 53.0
Hma1.2p1_0405F.1_g145730 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 4.9e-13 78.6 44 81.8
CAN.G897.4 Capsicum annuum HOM05D001529 ORTHO05D007595 6.4e-13 78.2 48 75.0
MD00G1047600 Malus domestica HOM05D001529 ORTHO05D007595 8.1e-08 61.2 37 73.0


User provided reference genes

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