Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 5.9e-98 360.9 189 100.0
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.6e-82 309.7 189 85.7
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 7.2e-80 300.8 189 83.1
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 5.9e-74 281.2 190 80.5
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 5.0e-73 278.1 189 79.9
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.5e-72 276.6 190 79.5
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.9e-72 276.2 191 80.6
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 4.3e-72 275.0 191 78.5
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 5.6e-72 274.6 191 79.6
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.2e-71 273.5 191 79.6
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.8e-71 272.3 190 78.4
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 6.1e-71 271.2 193 76.7
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 6.1e-71 271.2 193 76.7
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.0e-70 270.4 190 77.4
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 3.1e-70 268.9 186 78.5
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 5.2e-70 268.1 190 77.4
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 8.9e-70 267.3 186 76.3
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.5e-69 266.5 190 77.4
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 2.0e-69 266.2 190 76.3
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.0e-69 266.2 190 76.3
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.0e-69 266.2 190 76.3
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 3.4e-69 265.4 193 75.1
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 4.4e-69 265.0 190 75.3
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 5.8e-69 264.6 190 75.3
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 5.8e-69 264.6 189 74.6
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 3.7e-68 261.9 188 78.2
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.9e-68 261.5 191 75.4
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 6.4e-68 261.2 205 70.7
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 8.3e-68 260.8 190 73.7
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 1.1e-67 260.4 188 76.6
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.1e-67 260.4 188 72.9
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.4e-67 260.0 190 74.2
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.4e-67 259.2 190 74.2
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.4e-67 259.2 189 74.6
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 2.4e-67 259.2 189 73.5
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 2.4e-67 259.2 185 73.0
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.2e-67 258.8 191 72.8
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 5.4e-67 258.1 190 74.2
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 7.0e-67 257.7 188 75.0
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 7.0e-67 257.7 187 75.4
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-66 256.9 191 77.5
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-66 256.9 191 77.5
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 1.2e-66 256.9 186 74.7
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.2e-66 256.9 195 75.4
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.2e-66 256.9 188 75.0
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.6e-66 256.5 189 73.0
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.6e-66 255.0 190 72.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.6e-66 255.0 192 72.9
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 7.8e-66 254.2 190 76.3
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 7.8e-66 254.2 192 72.9
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 7.8e-66 254.2 190 73.7
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.3e-65 253.4 190 75.8
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.3e-65 253.4 186 72.6
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.7e-65 253.1 190 76.3
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.7e-65 253.1 174 78.2
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.3e-65 252.7 190 75.8
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 2.3e-65 252.7 190 75.8
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.3e-65 252.7 190 75.8
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 3.0e-65 252.3 186 73.7
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 3.0e-65 252.3 190 75.3
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 3.0e-65 252.3 193 72.5
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 3.9e-65 251.9 194 71.6
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 3.9e-65 251.9 190 73.7
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 3.9e-65 251.9 189 71.4
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 5.0e-65 251.5 190 73.2
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.1e-64 250.4 189 71.4
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.1e-64 250.4 194 73.7
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.1e-64 250.4 190 75.8
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.5e-64 250.0 191 72.3
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 3.3e-64 248.8 178 75.3
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 4.3e-64 248.4 190 75.3
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 4.3e-64 248.4 191 73.3
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 4.3e-64 248.4 188 72.3
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 5.6e-64 248.1 190 75.3
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 5.6e-64 248.1 190 72.1
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 5.6e-64 248.1 189 74.6
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 7.3e-64 247.7 188 73.9
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.2e-63 246.9 188 71.8
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.6e-63 246.5 189 72.0
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.1e-63 246.1 171 77.2
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 3.6e-63 245.4 192 74.5
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 4.7e-63 245.0 186 73.1
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 6.2e-63 244.6 192 68.2
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 6.2e-63 244.6 188 71.3
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.4e-62 243.4 194 70.1
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 4.0e-62 241.9 190 70.0
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 5.2e-62 241.5 185 71.4
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 5.2e-62 241.5 191 74.9
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 6.8e-62 241.1 189 70.9
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 8.9e-62 240.7 165 80.0
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 8.9e-62 240.7 189 70.4
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.2e-61 240.4 186 69.9
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.5e-61 240.0 191 69.1
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 4.4e-61 238.4 228 62.7
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.7e-60 236.5 218 63.3
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.9e-60 235.7 194 67.5
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 6.4e-60 234.6 189 70.4
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 6.4e-60 234.6 180 70.6
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 1.1e-59 233.8 191 69.1
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.4e-59 232.6 184 72.3
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 3.2e-59 232.3 186 70.4
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 4.1e-59 231.9 220 60.9
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 4.1e-59 231.9 184 67.4
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 5.4e-59 231.5 190 67.9
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-58 230.3 166 77.7
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 2.7e-58 229.2 167 76.6
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 4.6e-58 228.4 186 68.8
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 7.8e-58 227.6 168 76.2
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 7.8e-58 227.6 168 76.2
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 1.0e-57 227.3 189 65.6
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 5.1e-57 224.9 168 76.2
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 8.6e-57 224.2 194 68.6
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.5e-56 222.6 138 81.2
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 5.6e-56 221.5 190 66.3
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.6e-55 219.9 196 63.3
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.6e-55 219.9 188 67.0
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 1.1e-54 217.2 126 87.3
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 2.3e-54 216.1 186 65.1
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 4.0e-54 215.3 126 84.9
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 4.0e-54 215.3 124 88.7
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.0e-53 213.0 126 85.7
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.4e-53 212.2 160 73.8
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 5.8e-53 211.5 188 64.9
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 5.8e-53 211.5 125 84.0
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.7e-52 209.9 181 66.3
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.2e-52 209.5 195 62.1
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 6.4e-52 208.0 203 60.1
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 5.4e-51 204.9 132 79.5
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.2e-50 203.8 124 82.3
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 3.5e-50 202.2 157 73.2
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.5e-50 202.2 184 59.8
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.3e-49 200.3 191 61.8
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 2.3e-49 199.5 148 72.3
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 3.0e-49 199.1 196 60.7
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 3.9e-49 198.7 148 72.3
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 5.1e-49 198.4 148 72.3
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.9e-48 196.4 184 57.6
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.2e-47 193.7 173 60.7
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.7e-47 191.8 145 72.4
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 2.6e-45 186.0 157 66.9
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 3.4e-45 185.7 157 66.9
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 8.4e-44 181.0 197 56.9
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 3.2e-43 179.1 147 68.0
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 5.6e-40 168.3 137 63.5
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 2.1e-39 166.4 194 55.7
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.1e-38 164.1 191 51.8
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 9.0e-38 161.0 123 69.9
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.5e-37 160.2 189 51.3
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.5e-37 160.2 189 51.9
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.5e-37 160.2 122 64.8
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.3e-36 157.1 162 54.9
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.4e-35 152.9 189 51.9
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 9.3e-35 151.0 141 60.3
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 2.3e-33 146.4 94 83.0
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 2.3e-33 146.4 128 57.0
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 7.3e-32 141.4 160 50.6
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.6e-31 140.2 177 45.8
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 4.8e-31 138.7 77 90.9
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.1e-30 137.5 151 57.6
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.4e-30 137.1 113 68.1
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 7.6e-29 131.3 110 57.3
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.0e-25 120.9 68 88.2
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.6e-23 113.6 68 83.8
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 6.2e-23 111.7 68 82.4
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 4.9e-20 102.1 66 83.3
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 6.4e-20 101.7 85 71.8
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 2.1e-18 96.7 77 63.6
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 4.6e-18 95.5 60 78.3
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 7.9e-18 94.7 57 80.7
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.3e-17 94.0 125 51.2
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.3e-17 93.2 125 51.2
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.7e-15 85.9 47 85.1
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 6.2e-15 85.1 124 40.3
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.2e-10 70.9 99 51.5
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 7.4e-08 61.6 37 78.4
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 1.3e-07 60.8 53 62.3
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 2.2e-07 60.1 53 62.3
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 1.4e-06 57.4 53 60.4
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.4e-06 57.4 61 54.1
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 5.3e-06 55.5 30 83.3


User provided reference genes

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