Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04242 Striga asiatica HOM05D001470 ORTHO05D006756 1.7e-87 325.9 155 100.0
SGA_v2.0_scaffold24G10439 Striga asiatica HOM05D001470 ORTHO05D006756 3.2e-17 92.4 52 84.6
SGA_v2.0_scaffold52G18953 Striga asiatica HOM05D001470 ORTHO05D006756 4.6e-16 88.6 68 66.2
Nitab4.5_0005296g0020 Nicotiana tabacum HOM05D001470 ORTHO05D006756 8.7e-15 84.3 68 66.2
Nitab4.5_0000322g0050 Nicotiana tabacum HOM05D001470 ORTHO05D006756 1.5e-14 83.6 52 80.8
CAN.G643.4 Capsicum annuum HOM05D001470 ORTHO05D006756 2.5e-14 82.8 52 78.8
Lj1g0008455 Lotus japonicus HOM05D001470 ORTHO05D006756 2.5e-14 82.8 52 78.8
Peaxi162Scf00051g01416 Petunia axillaris HOM05D001470 ORTHO05D006756 5.7e-14 81.6 52 78.8
MSTRG.25372 Avicennia marina HOM05D001470 ORTHO05D006756 7.4e-14 81.3 52 78.8
Oeu037225.1 Olea europaea HOM05D001470 ORTHO05D006756 7.4e-14 81.3 52 76.9
Dinv27288 Davidia involucrata HOM05D001470 ORTHO05D006756 9.7e-14 80.9 52 78.8
Migut.C01109 Erythranthe guttata HOM05D001470 ORTHO05D006756 9.7e-14 80.9 52 76.9
Solyc06g060150.3 Solanum lycopersicum HOM05D001470 ORTHO05D006756 9.7e-14 80.9 52 76.9
Sopen06g020270 Solanum pennellii HOM05D001470 ORTHO05D006756 9.7e-14 80.9 52 76.9
Thecc.08G128800 Theobroma cacao HOM05D001470 ORTHO05D006756 9.7e-14 80.9 52 78.8
CiPaw.16G026200 Carya illinoinensis HOM05D001470 ORTHO05D006756 2.2e-13 79.7 52 76.9
CsaV3_6G034260 Cucumis sativus L. HOM05D001470 ORTHO05D006756 2.2e-13 79.7 68 63.2
Medtr3g088120 Medicago truncatula HOM05D001470 ORTHO05D006756 2.2e-13 79.7 52 73.1
Hma1.2p1_0054F.1_g031130 Hydrangea macrophylla HOM05D001470 ORTHO05D006756 2.8e-13 79.3 52 76.9
PGR044G0286 Punica granatum HOM05D001470 ORTHO05D006756 2.8e-13 79.3 52 76.9
Cpa.g.sc64.112 Carica papaya HOM05D001470 ORTHO05D006756 3.7e-13 79.0 52 76.9
Ca_16563_v3 Cicer arietinum L. HOM05D001470 ORTHO05D006756 3.7e-13 79.0 52 75.0
Duzib116G0621 Durio zibethinus HOM05D001470 ORTHO05D006756 3.7e-13 79.0 52 76.9
Potri.002G081200 Populus trichocarpa HOM05D001470 ORTHO05D006756 3.7e-13 79.0 52 75.0
QL09p033894 Quercus lobata HOM05D001470 ORTHO05D006756 3.7e-13 79.0 52 76.9
Sabra02G0063600 Salix brachista HOM05D001470 ORTHO05D006756 3.7e-13 79.0 52 75.0
Cc10_g12180 Coffea canephora HOM05D001470 ORTHO05D006756 4.8e-13 78.6 68 61.8
Haze_17510 Corylus avellana HOM05D001470 ORTHO05D006756 4.8e-13 78.6 52 75.0
Manes.18G079501 Manihot esculenta HOM05D001470 ORTHO05D006756 4.8e-13 78.6 51 78.4
arahy.Tifrunner.gnm1.ann1.0P0L33 Arachis hypogaea HOM05D001470 ORTHO05D006756 6.3e-13 78.2 50 78.0
CSS0028817 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 6.3e-13 78.2 52 75.0
ClCG00G002270 Citrullus lanatus HOM05D001470 ORTHO05D006756 6.3e-13 78.2 68 61.8
Eucgr.F04342 Eucalyptus grandis HOM05D001470 ORTHO05D006756 6.3e-13 78.2 52 75.0
Lalb_Chr11g0065951 Lupinus albus HOM05D001470 ORTHO05D006756 6.3e-13 78.2 52 76.9
unitig_22.g5493 Utricularia gibba HOM05D001470 ORTHO05D006756 6.3e-13 78.2 51 74.5
AUR62014313 Chenopodium quinoa HOM05D001470 ORTHO05D006756 8.2e-13 77.8 52 76.9
Ciclev10001597m.g Citrus clementina HOM05D001470 ORTHO05D006756 8.2e-13 77.8 67 62.7
Glyma.04G248900 Glycine max HOM05D001470 ORTHO05D006756 8.2e-13 77.8 52 75.0
Lj4A633G16 Lonicera japonica HOM05D001470 ORTHO05D006756 8.2e-13 77.8 69 59.4
FvH4_2g27410 Fragaria vesca HOM05D001470 ORTHO05D006756 1.1e-12 77.4 53 71.7
FAN15G1146 Fragaria x ananassa HOM05D001470 ORTHO05D006756 1.1e-12 77.4 53 71.7
Atru.chr13.1511 Acer truncatum HOM05D001470 ORTHO05D006756 1.4e-12 77.0 52 75.0
arahy.Tifrunner.gnm1.ann1.D58UPY Arachis hypogaea HOM05D001470 ORTHO05D006756 1.4e-12 77.0 50 76.0
Gohir.A05G236800 Gossypium hirsutum HOM05D001470 ORTHO05D006756 1.4e-12 77.0 52 73.1
Gohir.D05G238900 Gossypium hirsutum HOM05D001470 ORTHO05D006756 1.4e-12 77.0 52 73.1
Gorai.009G247600 Gossypium raimondii HOM05D001470 ORTHO05D006756 1.4e-12 77.0 52 73.1
Psat5g086560 Pisum sativum HOM05D001470 ORTHO05D006756 1.4e-12 77.0 52 73.1
Aa31LG4G7480 Aethionema arabicum HOM05D001470 ORTHO05D006756 1.8e-12 76.6 52 73.1
AUR62019054 Chenopodium quinoa HOM05D001470 ORTHO05D006756 1.8e-12 76.6 52 76.9
Glyma.06G114100 Glycine max HOM05D001470 ORTHO05D006756 1.8e-12 76.6 52 75.0
RcHm_v2.0_Chr6g0296261 Rosa chinensis HOM05D001470 ORTHO05D006756 1.8e-12 76.6 52 73.1
TWI32G1289 Tripterygium wilfordii HOM05D001470 ORTHO05D006756 1.8e-12 76.6 51 76.5
Actinidia03460 Actinidia chinensis HOM05D001470 ORTHO05D006756 2.4e-12 76.3 51 74.5
CSS0038151 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 2.4e-12 76.3 51 74.5
CSS0043529 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 2.4e-12 76.3 51 74.5
Duzib093G0261 Durio zibethinus HOM05D001470 ORTHO05D006756 2.4e-12 76.3 52 75.0
Hma1.2p1_0129F.1_g060430 Hydrangea macrophylla HOM05D001470 ORTHO05D006756 2.4e-12 76.3 52 75.0
MD00G1028800 Malus domestica HOM05D001470 ORTHO05D006756 2.4e-12 76.3 51 74.5
Phvul.009G126000 Phaseolus vulgaris HOM05D001470 ORTHO05D006756 3.1e-12 75.9 52 71.2
SalBow7G2997 Salvia bowleyana HOM05D001470 ORTHO05D006756 3.1e-12 75.9 52 73.1
BcaB02g07107 Brassica carinata HOM05D001470 ORTHO05D006756 4.1e-12 75.5 52 71.2
CARHR070990 Cardamine hirsuta HOM05D001470 ORTHO05D006756 4.1e-12 75.5 52 71.2
Sp5g32630 Schrenkiella parvula HOM05D001470 ORTHO05D006756 4.1e-12 75.5 52 71.2
TPR.G40868 Trifolium pratense HOM05D001470 ORTHO05D006756 4.1e-12 75.5 52 71.2
BcaC08g45476 Brassica carinata HOM05D001470 ORTHO05D006756 5.3e-12 75.1 52 71.2
C06p31240 Brassica napus HOM05D001470 ORTHO05D006756 5.3e-12 75.1 52 71.2
BolC6t38263H Brassica oleracea HOM05D001470 ORTHO05D006756 5.3e-12 75.1 52 71.2
BraA07t30444Z Brassica rapa HOM05D001470 ORTHO05D006756 5.3e-12 75.1 52 71.2
Cfa018570 Carpinus fangiana HOM05D001470 ORTHO05D006756 5.3e-12 75.1 51 74.5
THA.LOC104800207 Tarenaya hassleriana HOM05D001470 ORTHO05D006756 5.3e-12 75.1 52 71.2
TAR628G0775 Trochodendron aralioides HOM05D001470 ORTHO05D006756 5.3e-12 75.1 52 69.2
GSVIVG01008841001 Vitis vinifera HOM05D001470 ORTHO05D006756 5.3e-12 75.1 51 74.5
BcaB05g25051 Brassica carinata HOM05D001470 ORTHO05D006756 6.9e-12 74.7 52 71.2
A02p21300 Brassica napus HOM05D001470 ORTHO05D006756 6.9e-12 74.7 52 71.2
A07p27990 Brassica napus HOM05D001470 ORTHO05D006756 6.9e-12 74.7 52 71.2
C02p34610 Brassica napus HOM05D001470 ORTHO05D006756 6.9e-12 74.7 52 71.2
BraA02t07148Z Brassica rapa HOM05D001470 ORTHO05D006756 6.9e-12 74.7 52 71.2
Lsat_1_v5_gn_3_34541 Lactuca sativa HOM05D001470 ORTHO05D006756 6.9e-12 74.7 51 72.5
HanXRQChr17g0541081 Helianthus annuus HOM05D001470 ORTHO05D006756 9.0e-12 74.3 51 72.5
TWI60G1154 Tripterygium wilfordii HOM05D001470 ORTHO05D006756 9.0e-12 74.3 51 74.5
TAR376G0409 Trochodendron aralioides HOM05D001470 ORTHO05D006756 9.0e-12 74.3 52 71.2
arahy.Tifrunner.gnm1.ann1.8CL4NV Arachis hypogaea HOM05D000112 ORTHO05D000201 1.2e-11 73.9 51 70.6
Prupe.1G493300 Prunus persica HOM05D001470 ORTHO05D006756 1.2e-11 73.9 53 73.6
BcaC03g15740 Brassica carinata HOM05D001470 ORTHO05D006756 1.5e-11 73.6 52 69.2
BolC2t09486H Brassica oleracea HOM05D001470 ORTHO05D006756 1.5e-11 73.6 52 69.2
Os02g0775200 Oryza sativa ssp. japonica HOM05D001470 ORTHO05D006756 1.5e-11 73.6 51 72.5
Rhsim11G0069700 Rhododendron simsii HOM05D001470 ORTHO05D006756 1.5e-11 73.6 69 60.9
Ah.05g170940 Amaranthus hybridus HOM05D001470 ORTHO05D006756 2.0e-11 73.2 52 73.1
Sc07g0004500 Simmondsia chinensis HOM05D001470 ORTHO05D006756 2.6e-11 72.8 52 69.2
vmacro00847 Vaccinium macrocarpon HOM05D001470 ORTHO05D006756 2.6e-11 72.8 55 70.9
ClCG08G005860 Citrullus lanatus HOM05D001470 ORTHO05D006756 4.5e-11 72.0 49 73.5
ECA246G2621 Erigeron canadensis HOM05D001470 ORTHO05D006756 4.5e-11 72.0 51 70.6
Thhalv10018756m.g Eutrema salsugineum HOM05D001470 ORTHO05D006756 4.5e-11 72.0 52 69.2
Zm00001eb256550 Zea mays HOM05D001470 ORTHO05D006756 5.9e-11 71.6 51 70.6
Hma1.2p1_0129F.1_g060420 Hydrangea macrophylla HOM05D001470 ORTHO05D006756 7.7e-11 71.2 47 76.6
CDE06G1142 Ceratophyllum demersum HOM05D001470 ORTHO05D006756 1.0e-10 70.9 52 69.2
vmacro00787 Vaccinium macrocarpon HOM05D001470 ORTHO05D006756 1.3e-10 70.5 53 69.8
ATR0709G002 Amborella trichopoda HOM05D001470 ORTHO05D006756 2.2e-10 69.7 52 63.5
MD15G1345300 Malus domestica HOM05D001470 ORTHO05D006756 2.2e-10 69.7 47 74.5
Sed0023365 Sechium edule HOM05D001470 ORTHO05D006756 2.2e-10 69.7 62 59.7
Nn5g28359 Nelumbo nucifera HOM05D001470 ORTHO05D006756 2.9e-10 69.3 51 68.6
Carub.0002s2436 Capsella rubella HOM05D001470 ORTHO05D006756 5.0e-10 68.6 73 53.4
DCAR_026835 Daucus carota HOM05D001470 ORTHO05D006756 5.0e-10 68.6 77 50.6
Aqoxy6G00254 Aquilegia oxysepala HOM05D001470 ORTHO05D006756 6.5e-10 68.2 51 66.7
Gohir.A06G118900 Gossypium hirsutum HOM05D001470 ORTHO05D006756 8.5e-10 67.8 52 69.2
SEGI_11240 Sequoiadendron giganteum HOM05D001470 ORTHO05D006756 8.5e-10 67.8 52 67.3
Hund17307 Selenicereus undatus HOM05D001470 ORTHO05D006756 1.1e-09 67.4 52 69.2
AL2G37670 Arabidopsis lyrata HOM05D001470 ORTHO05D006756 1.9e-09 66.6 60 61.7
EL10Ac1g01041 Beta vulgaris HOM05D001470 ORTHO05D006756 1.9e-09 66.6 40 82.5
AT1G77470 Arabidopsis thaliana HOM05D001470 ORTHO05D006756 4.2e-09 65.5 60 60.0
Migut.H00688 Erythranthe guttata HOM05D000001 ORTHO05D010162 7.2e-09 64.7 48 68.8
PSO170G0410 Papaver somniferum HOM05D001470 ORTHO05D006756 7.2e-09 64.7 51 64.7
Pp3c13_4510 Physcomitrium patens HOM05D001470 ORTHO05D006756 7.2e-09 64.7 52 61.5
CANSAT25G1662 Cannabis sativa HOM05D001470 ORTHO05D006756 9.4e-09 64.3 51 64.7
SGA_v2.0_scaffold20G09020 Striga asiatica HOM05D000001 ORTHO05D010162 9.4e-09 64.3 33 93.9
Mapoly0024s0100 Marchantia polymorpha HOM05D001470 ORTHO05D006756 1.6e-08 63.5 52 57.7
CBR_g61472 Chara braunii HOM05D001470 ORTHO05D006756 2.1e-08 63.2 48 60.4
SHI31507 Sapria himalayana HOM05D001470 ORTHO05D006756 2.1e-08 63.2 43 72.1
PSO528G0178 Papaver somniferum HOM05D001470 ORTHO05D006756 3.6e-08 62.4 51 60.8
FAN20G1865 Fragaria x ananassa HOM05D001470 ORTHO05D006756 4.6e-08 62.0 45 66.7
AagrBONN_evm.TU.Sc2ySwM_344.153 Anthoceros agrestis HOM05D001470 ORTHO05D006756 7.9e-08 61.2 56 55.4
MBI06_g04545_MAGBIO Magnolia biondii HOM05D001470 ORTHO05D006756 1.4e-07 60.5 40 72.5
SMO329G0082 Selaginella moellendorffii HOM05D001470 ORTHO05D006756 2.3e-07 59.7 52 55.8
AagrBONN_evm.TU.Sc2ySwM_368.36 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.7e-07 58.2 68 45.6
FAN13G1115 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.8e-07 57.8 47 57.4
RcHm_v2.0_Chr7g0192571 Rosa chinensis HOM05D000001 ORTHO05D000003 8.8e-07 57.8 47 57.4
Cpa.g.sc83.11 Carica papaya HOM05D000001 ORTHO05D010579 1.1e-06 57.4 61 50.8
CANSAT80G0774 Cannabis sativa HOM05D000001 ORTHO05D000003 1.5e-06 57.0 50 54.0
FvH4_5g06290 Fragaria vesca HOM05D000001 ORTHO05D000003 1.5e-06 57.0 47 57.4
FAN18G2785 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-06 57.0 47 57.4
CsaV3_1G001080 Cucumis sativus L. HOM05D000001 ORTHO05D000003 2.0e-06 56.6 50 56.0
Oeu055770.1 Olea europaea HOM05D000001 ORTHO05D010579 2.0e-06 56.6 61 49.2
MELO3C026257.2 Cucumis melo HOM05D000001 ORTHO05D000003 3.3e-06 55.8 50 56.0
FAN08G1369 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.3e-06 55.8 44 59.1
PGR083G2411 Punica granatum HOM05D000001 ORTHO05D000003 3.3e-06 55.8 48 56.2
TAR622G0401 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.3e-06 55.8 48 54.2
BraA02t07163Z Brassica rapa HOM05D001470 ORTHO05D006756 4.3e-06 55.5 42 66.7
FAN04G1941 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.3e-06 55.5 47 55.3
CAN.G1045.23 Capsicum annuum HOM05D000001 ORTHO05D010162 5.7e-06 55.1 48 56.2
ClCG06G017430 Citrullus lanatus HOM05D000001 ORTHO05D000003 5.7e-06 55.1 48 56.2
SGA_v2.0_scaffold25G10799 Striga asiatica HOM05D000001 ORTHO05D000003 5.7e-06 55.1 50 52.0
Duzib168G1686 Durio zibethinus HOM05D000001 ORTHO05D000003 7.4e-06 54.7 67 49.3
Eucgr.B00221 Eucalyptus grandis HOM05D000001 ORTHO05D000003 7.4e-06 54.7 48 54.2
Nitab4.5_0003005g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 7.4e-06 54.7 66 48.5
Sed0018786 Sechium edule HOM05D000001 ORTHO05D000003 7.4e-06 54.7 48 56.2
Thecc.09G303000 Theobroma cacao HOM05D000001 ORTHO05D000003 7.4e-06 54.7 70 50.0
QL10p006885 Quercus lobata HOM05D000001 ORTHO05D000003 9.7e-06 54.3 55 47.3
Sed0009294 Sechium edule HOM05D000001 ORTHO05D009582 9.7e-06 54.3 53 45.3


User provided reference genes

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