Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 9.8e-96 353.6 196 100.0
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 3.6e-66 255.4 198 79.3
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 3.1e-57 225.7 201 69.7
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.2e-56 223.8 196 70.9
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.9e-54 216.5 197 67.0
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 3.9e-52 208.8 202 65.3
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 6.6e-52 208.0 205 61.5
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 1.5e-51 206.8 206 61.7
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 1.5e-51 206.8 196 66.3
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 1.9e-51 206.5 205 61.5
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 1.9e-51 206.5 204 61.3
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 3.3e-51 205.7 200 62.5
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 5.6e-51 204.9 206 61.7
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 7.3e-51 204.5 207 62.3
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 1.2e-50 203.8 206 62.1
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.2e-50 203.8 206 61.7
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.6e-50 203.4 201 63.2
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.6e-50 203.4 203 61.6
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 2.1e-50 203.0 203 62.1
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.8e-50 202.6 207 59.9
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.6e-50 202.2 206 60.2
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.6e-50 202.2 206 60.2
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 3.6e-50 202.2 206 60.2
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 6.2e-50 201.4 204 61.8
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 6.2e-50 201.4 202 61.4
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 6.2e-50 201.4 206 62.1
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 1.1e-49 200.7 207 59.9
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.1e-49 200.7 205 62.4
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 1.8e-49 199.9 207 59.4
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 2.4e-49 199.5 207 60.9
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 3.1e-49 199.1 205 60.5
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 3.1e-49 199.1 202 63.4
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 9.0e-49 197.6 206 58.7
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 9.0e-49 197.6 195 61.5
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 1.2e-48 197.2 203 61.1
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 2.0e-48 196.4 200 61.0
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 2.6e-48 196.1 208 60.6
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 2.6e-48 196.1 207 60.9
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 3.4e-48 195.7 206 58.7
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 3.4e-48 195.7 207 58.9
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 4.4e-48 195.3 201 58.7
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 5.8e-48 194.9 201 62.2
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 5.8e-48 194.9 195 60.5
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 9.9e-48 194.1 200 60.0
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.3e-47 193.7 202 60.4
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 1.7e-47 193.4 206 58.7
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 2.2e-47 193.0 205 59.5
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 2.9e-47 192.6 208 59.6
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.9e-47 192.6 202 59.9
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 3.8e-47 192.2 203 61.1
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 4.9e-47 191.8 203 59.6
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.9e-47 191.8 203 59.6
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 4.9e-47 191.8 199 60.3
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 4.9e-47 191.8 196 62.8
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 4.9e-47 191.8 207 62.3
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.4e-47 191.4 202 59.4
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 6.4e-47 191.4 202 59.4
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 6.4e-47 191.4 206 56.3
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 6.4e-47 191.4 207 58.9
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 8.4e-47 191.0 204 59.8
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 8.4e-47 191.0 205 59.5
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 1.4e-46 190.3 207 59.4
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.4e-46 190.3 214 56.1
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 1.4e-46 190.3 196 60.7
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 1.9e-46 189.9 202 61.4
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 4.2e-46 188.7 205 61.0
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 4.2e-46 188.7 195 57.9
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 5.4e-46 188.3 198 55.6
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 5.4e-46 188.3 197 60.4
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 9.3e-46 187.6 197 57.9
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.2e-45 187.2 207 58.0
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 1.6e-45 186.8 201 59.7
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 2.7e-45 186.0 193 58.5
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 3.5e-45 185.7 214 54.7
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 3.5e-45 185.7 206 60.2
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 1.3e-44 183.7 208 57.2
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 1.3e-44 183.7 208 57.2
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.7e-44 183.3 208 57.2
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 2.3e-44 183.0 205 57.1
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 3.0e-44 182.6 195 61.0
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 3.0e-44 182.6 204 58.3
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 3.9e-44 182.2 197 60.4
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 6.6e-44 181.4 210 55.7
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 8.7e-44 181.0 203 59.6
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 1.1e-43 180.6 202 56.4
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.1e-43 180.6 199 62.3
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 1.1e-43 180.6 208 56.2
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.1e-43 180.6 200 58.0
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 1.5e-43 180.3 209 56.0
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 1.9e-43 179.9 202 56.9
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 2.5e-43 179.5 207 56.0
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 2.5e-43 179.5 205 55.1
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 3.3e-43 179.1 210 56.2
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 3.3e-43 179.1 210 56.2
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 3.3e-43 179.1 211 55.0
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 9.6e-43 177.6 204 58.8
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.3e-42 177.2 196 57.7
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.3e-42 177.2 199 58.3
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 3.6e-42 175.6 209 58.4
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 3.6e-42 175.6 200 56.5
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 8.1e-42 174.5 199 58.8
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.4e-41 173.7 200 57.5
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 1.8e-41 173.3 208 54.8
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 2.4e-41 172.9 207 56.0
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 2.4e-41 172.9 203 56.2
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 3.1e-41 172.6 209 55.0
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 3.1e-41 172.6 214 53.7
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 4.0e-41 172.2 193 55.4
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 4.0e-41 172.2 208 54.8
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 4.0e-41 172.2 197 55.8
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 5.3e-41 171.8 198 54.5
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 6.9e-41 171.4 202 55.9
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 6.9e-41 171.4 195 56.4
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 6.9e-41 171.4 209 55.0
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 9.0e-41 171.0 207 55.1
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 9.0e-41 171.0 207 55.1
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 9.0e-41 171.0 207 55.1
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 9.0e-41 171.0 200 54.5
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 1.2e-40 170.6 208 54.3
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 1.2e-40 170.6 209 54.5
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 2.6e-40 169.5 202 54.5
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 2.6e-40 169.5 197 56.3
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 3.4e-40 169.1 208 54.3
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 4.5e-40 168.7 205 55.6
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 4.5e-40 168.7 200 55.5
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 2.2e-39 166.4 213 53.1
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.9e-38 163.3 203 55.2
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 4.3e-35 152.1 199 50.3
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 5.6e-35 151.8 202 52.5
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 2.4e-33 146.4 169 53.3
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 1.5e-32 143.7 172 54.1
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 1.5e-32 143.7 203 51.2
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 5.8e-32 141.7 201 48.8
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.7e-31 140.2 136 56.6
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 1.7e-31 140.2 198 47.5
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 2.5e-30 136.3 198 46.0
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 3.9e-28 129.0 210 45.2
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 5.1e-28 128.6 204 46.6
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 5.1e-28 128.6 178 47.2
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 1.5e-27 127.1 139 55.4
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.9e-27 126.7 139 51.1
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 4.3e-27 125.6 161 46.0
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 9.6e-27 124.4 175 44.6
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 1.3e-26 124.0 175 53.1
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 2.1e-21 106.7 197 41.1
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 2.7e-21 106.3 199 42.2
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 3.7e-18 95.9 143 46.2
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 4.8e-18 95.5 75 69.3
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 4.5e-16 89.0 120 52.5
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 1.7e-15 87.0 134 44.0
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 2.9e-15 86.3 126 45.2
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 2.9e-15 86.3 190 41.6
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.2e-14 82.8 134 43.3
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 6.1e-13 78.6 119 42.9
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.9e-13 78.2 119 42.0
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 8.8e-12 74.7 143 44.1
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.0e-11 73.6 193 37.8
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 8.2e-10 68.2 118 35.6
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 5.3e-09 65.5 133 42.9
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 3.4e-08 62.8 130 37.7
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 3.2e-06 56.2 85 51.8


User provided reference genes

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