Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold85G26577 Striga asiatica HOM05D001768 ORTHO05D405971 7.5e-80 300.4 150 100.0
SGA_v2.0_scaffold391G50611 Striga asiatica HOM05D001237 ORTHO05D406477 2.0e-69 265.8 139 95.7
SGA_v2.0_scaffold90G27721 Striga asiatica HOM05D001768 ORTHO05D403402 1.3e-28 130.2 65 92.3
SGA_v2.0_scaffold18G08485 Striga asiatica HOM05D001768 ORTHO05D001907 4.1e-09 65.5 69 50.7
SGA_v2.0_scaffold44G16864 Striga asiatica HOM05D001768 ORTHO05D001907 2.0e-08 63.2 63 54.0
Hma1.2p1_0115F.1_g055630 Hydrangea macrophylla HOM05D001768 ORTHO05D001907 1.3e-07 60.5 74 45.9
Nitab4.5_0001961g0090 Nicotiana tabacum HOM05D001768 ORTHO05D001907 1.3e-07 60.5 63 54.0
Nitab4.5_0002356g0110 Nicotiana tabacum HOM05D001768 ORTHO05D001907 1.3e-07 60.5 63 54.0
Nitab4.5_0000302g0020 Nicotiana tabacum HOM05D001768 ORTHO05D001907 2.2e-07 59.7 63 52.4
Nitab4.5_0005570g0040 Nicotiana tabacum HOM05D001768 ORTHO05D001907 2.2e-07 59.7 63 52.4
Solyc08g014550.3 Solanum lycopersicum HOM05D001768 ORTHO05D001907 2.2e-07 59.7 63 52.4
Solyc12g096700.2 Solanum lycopersicum HOM05D001768 ORTHO05D001907 2.2e-07 59.7 63 50.8
Sopen08g005520 Solanum pennellii HOM05D001768 ORTHO05D001907 2.2e-07 59.7 63 52.4
Sopen12g032530 Solanum pennellii HOM05D001768 ORTHO05D001907 2.2e-07 59.7 63 50.8
PGSC0003DMG400025212 Solanum tuberosum HOM05D001768 ORTHO05D001907 2.2e-07 59.7 63 52.4
Lj3A892T32 Lonicera japonica HOM05D001768 ORTHO05D001907 2.9e-07 59.3 78 46.2
Nitab4.5_0002123g0080 Nicotiana tabacum HOM05D001768 ORTHO05D001907 2.9e-07 59.3 63 52.4
CAN.G607.1 Capsicum annuum HOM05D001768 ORTHO05D001907 3.8e-07 58.9 63 50.8
Oeu037983.1 Olea europaea HOM05D001768 ORTHO05D001907 3.8e-07 58.9 69 47.8
CSS0000739 Camellia sinensis var. sinensis HOM05D001768 ORTHO05D001907 5.0e-07 58.5 63 50.8
CAN.G65.174 Capsicum annuum HOM05D001768 ORTHO05D001907 5.0e-07 58.5 63 50.8
Lj1A1030G30 Lonicera japonica HOM05D001768 ORTHO05D001907 5.0e-07 58.5 69 47.8
PGSC0003DMG400029266 Solanum tuberosum HOM05D001768 ORTHO05D001907 5.0e-07 58.5 63 49.2
SGA_v2.0_scaffold141G35577 Striga asiatica HOM05D001768 ORTHO05D001907 5.0e-07 58.5 63 50.8
Hma1.2p1_0415F.1_g148320 Hydrangea macrophylla HOM05D001768 ORTHO05D001907 6.5e-07 58.2 63 50.8
Oeu017362.1 Olea europaea HOM05D001768 ORTHO05D001907 8.5e-07 57.8 69 46.4
Migut.F00133 Erythranthe guttata HOM05D001768 ORTHO05D001907 1.1e-06 57.4 63 49.2
Solyc06g073310.3 Solanum lycopersicum HOM05D001768 ORTHO05D001907 1.1e-06 57.4 63 49.2
Sopen06g029670 Solanum pennellii HOM05D001768 ORTHO05D001907 1.1e-06 57.4 63 49.2
Dinv29199 Davidia involucrata HOM05D001768 ORTHO05D001907 1.4e-06 57.0 63 50.8
PGSC0003DMG400026910 Solanum tuberosum HOM05D001768 ORTHO05D001907 1.4e-06 57.0 63 49.2
vmacro06465 Vaccinium macrocarpon HOM05D001768 ORTHO05D001907 1.4e-06 57.0 63 49.2
MSTRG.8549 Avicennia marina HOM05D001768 ORTHO05D001907 1.9e-06 56.6 63 49.2
MBI18_g35653_MAGBIO Magnolia biondii HOM05D001768 ORTHO05D001907 1.9e-06 56.6 74 44.6
Oeu061041.3 Olea europaea HOM05D001768 ORTHO05D001907 1.9e-06 56.6 63 49.2
Rhsim03G0217400 Rhododendron simsii HOM05D001768 ORTHO05D001907 1.9e-06 56.6 63 49.2
SGA_v2.0_scaffold165G38195 Striga asiatica HOM05D001768 ORTHO05D001907 1.9e-06 56.6 63 49.2
DCAR_020386 Daucus carota HOM05D002676 ORTHO05D003194 2.5e-06 56.2 69 46.4
Sp1g28650 Schrenkiella parvula HOM05D001768 ORTHO05D001907 2.5e-06 56.2 69 43.5
Sc19g0000450 Simmondsia chinensis HOM05D001768 ORTHO05D001907 2.5e-06 56.2 112 36.6
TAR463G0006 Trochodendron aralioides HOM05D001768 ORTHO05D001907 2.5e-06 56.2 63 49.2
unitig_736.g22894 Utricularia gibba HOM05D001768 ORTHO05D001907 2.5e-06 56.2 63 49.2
unitig_90.g27505 Utricularia gibba HOM05D001768 ORTHO05D001907 2.5e-06 56.2 63 49.2
Gohir.A12G243400 Gossypium hirsutum HOM05D001768 ORTHO05D001907 3.2e-06 55.8 56 51.8
MBI17_g24512_MAGBIO Magnolia biondii HOM05D001768 ORTHO05D001907 3.2e-06 55.8 74 43.2
Nitab4.5_0000013g0110 Nicotiana tabacum HOM05D001768 ORTHO05D001907 3.2e-06 55.8 63 50.8
Sp1g28640 Schrenkiella parvula HOM05D001768 ORTHO05D001907 3.2e-06 55.8 69 43.5
Nn1g09091 Nelumbo nucifera HOM05D001768 ORTHO05D001907 4.2e-06 55.5 63 47.6
Peaxi162Scf01205g00034 Petunia axillaris HOM05D000037 ORTHO05D001907 4.2e-06 55.5 63 49.2
Hund21076 Selenicereus undatus HOM05D001768 ORTHO05D001907 4.2e-06 55.5 63 49.2
AL1G47490 Arabidopsis lyrata HOM05D001768 ORTHO05D001907 5.5e-06 55.1 69 43.5
AL1G47500 Arabidopsis lyrata HOM05D001768 ORTHO05D001907 5.5e-06 55.1 69 43.5
Thhalv10008838m.g Eutrema salsugineum HOM05D001768 ORTHO05D001907 5.5e-06 55.1 69 43.5
Gorai.008G262000 Gossypium raimondii HOM05D001768 ORTHO05D001907 5.5e-06 55.1 72 44.4
Lalb_Chr11g0067511 Lupinus albus HOM05D001768 ORTHO05D001907 5.5e-06 55.1 63 49.2
Lalb_Chr23g0272021 Lupinus albus HOM05D001768 ORTHO05D001907 5.5e-06 55.1 63 49.2
Nn3g18752 Nelumbo nucifera HOM05D001768 ORTHO05D001907 5.5e-06 55.1 63 47.6
SalBow4G0342 Salvia bowleyana HOM05D001768 ORTHO05D001907 5.5e-06 55.1 63 47.6
SalBow4G1998 Salvia bowleyana HOM05D001768 ORTHO05D001907 5.5e-06 55.1 63 47.6
SalBow4G2136 Salvia bowleyana HOM05D001768 ORTHO05D001907 5.5e-06 55.1 63 47.6
SalBow4G2355 Salvia bowleyana HOM05D001768 ORTHO05D001907 5.5e-06 55.1 63 47.6
COL.COLO4_10857 Corchorus olitorius HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
MELO3C024850.2 Cucumis melo HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
Duzib068G1227 Durio zibethinus HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
Duzib084G0896 Durio zibethinus HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
Duzib205G1940 Durio zibethinus HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
FvH4_7g33110 Fragaria vesca HOM05D001768 ORTHO05D001907 7.2e-06 54.7 62 48.4
FAN01G2549 Fragaria x ananassa HOM05D001768 ORTHO05D001907 7.2e-06 54.7 62 48.4
FAN03G2262 Fragaria x ananassa HOM05D001768 ORTHO05D001907 7.2e-06 54.7 62 48.4
FAN10G3817 Fragaria x ananassa HOM05D001768 ORTHO05D001907 7.2e-06 54.7 62 48.4
FAN10G4162 Fragaria x ananassa HOM05D001768 ORTHO05D001907 7.2e-06 54.7 62 48.4
Gohir.A02G094600 Gossypium hirsutum HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
Gohir.A11G017600 Gossypium hirsutum HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
Gohir.D03G088900 Gossypium hirsutum HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
Gohir.D11G017400 Gossypium hirsutum HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
Gorai.003G072800 Gossypium raimondii HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
Gorai.007G018400 Gossypium raimondii HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
Oeu029330.1 Olea europaea HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
Sc13g0010630 Simmondsia chinensis HOM05D001768 ORTHO05D001907 7.2e-06 54.7 73 46.6
Thecc.03G214600 Theobroma cacao HOM05D001768 ORTHO05D001907 7.2e-06 54.7 63 47.6
AT1G33120 Arabidopsis thaliana HOM05D001768 ORTHO05D001907 9.4e-06 54.3 62 46.8
AT1G33140 Arabidopsis thaliana HOM05D001768 ORTHO05D001907 9.4e-06 54.3 62 46.8
Cfa016141 Carpinus fangiana HOM05D001768 ORTHO05D001907 9.4e-06 54.3 63 47.6
Haze_00320 Corylus avellana HOM05D001768 ORTHO05D001907 9.4e-06 54.3 63 47.6
CsaV3_4G009970 Cucumis sativus L. HOM05D001768 ORTHO05D001907 9.4e-06 54.3 63 47.6
Sed0011061 Sechium edule HOM05D001768 ORTHO05D001907 9.4e-06 54.3 63 47.6


User provided reference genes

Program Settings