Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold834G53652 Striga asiatica HOM05D003609 ORTHO05D004185 8.1e-123 443.7 221 100.0
SGA_v2.0_scaffold139G35343 Striga asiatica HOM05D003609 ORTHO05D004185 9.9e-105 383.6 317 66.6
SGA_v2.0_scaffold223G42845 Striga asiatica HOM05D003609 ORTHO05D004185 1.9e-79 299.7 170 87.6
MSTRG.16279 Avicennia marina HOM05D003609 ORTHO05D004185 3.6e-78 295.4 170 85.3
SGA_v2.0_scaffold1G00234 Striga asiatica HOM05D003609 ORTHO05D004185 6.1e-78 294.7 168 88.1
Rhsim13G0119500 Rhododendron simsii HOM05D003609 ORTHO05D004185 7.9e-78 294.3 170 85.3
Migut.M01878 Erythranthe guttata HOM05D003609 ORTHO05D004185 1.0e-77 293.9 170 84.1
SalBow8G0777 Salvia bowleyana HOM05D003609 ORTHO05D004185 1.8e-77 293.1 170 84.7
PGR031G0855 Punica granatum HOM05D003609 ORTHO05D004185 1.5e-76 290.0 170 83.5
Ciclev10014106m.g Citrus clementina HOM05D003609 ORTHO05D004185 2.0e-76 289.7 170 83.5
CSS0002848 Camellia sinensis var. sinensis HOM05D003609 ORTHO05D004185 3.3e-76 288.9 170 84.1
CAN.G1437.4 Capsicum annuum HOM05D003609 ORTHO05D004185 3.3e-76 288.9 170 82.9
DCAR_027872 Daucus carota HOM05D003609 ORTHO05D004185 3.3e-76 288.9 170 82.9
Gohir.D02G238300 Gossypium hirsutum HOM05D003609 ORTHO05D004185 3.3e-76 288.9 170 82.9
Gorai.005G266800 Gossypium raimondii HOM05D003609 ORTHO05D004185 3.3e-76 288.9 170 82.9
Solyc02g021650.3 Solanum lycopersicum HOM05D003609 ORTHO05D004185 3.3e-76 288.9 170 82.9
Sopen02g006220 Solanum pennellii HOM05D003609 ORTHO05D004185 3.3e-76 288.9 170 82.9
COL.COLO4_17669 Corchorus olitorius HOM05D003609 ORTHO05D004185 4.3e-76 288.5 170 82.9
ECA236G2324 Erigeron canadensis HOM05D003609 ORTHO05D004185 4.3e-76 288.5 170 82.9
Hma1.2p1_1418F.1_g282240 Hydrangea macrophylla HOM05D003609 ORTHO05D004185 4.3e-76 288.5 170 82.9
Manes.06G061000 Manihot esculenta HOM05D003609 ORTHO05D004185 4.3e-76 288.5 170 82.9
Oeu015191.1 Olea europaea HOM05D003609 ORTHO05D004185 4.3e-76 288.5 170 83.5
Actinidia07464 Actinidia chinensis HOM05D003609 ORTHO05D004185 5.7e-76 288.1 170 83.5
GSVIVG01021587001 Vitis vinifera HOM05D003609 ORTHO05D004185 5.7e-76 288.1 170 83.5
Gohir.A03G216700 Gossypium hirsutum HOM05D003609 ORTHO05D004185 7.4e-76 287.7 170 82.4
RcHm_v2.0_Chr5g0015371 Rosa chinensis HOM05D003609 ORTHO05D004185 7.4e-76 287.7 170 82.9
Atru.chr10.957 Acer truncatum HOM05D003609 ORTHO05D004185 9.7e-76 287.3 170 82.4
Lsat_1_v5_gn_7_31981 Lactuca sativa HOM05D003609 ORTHO05D004185 1.3e-75 287.0 170 82.4
THA.LOC104812376 Tarenaya hassleriana HOM05D003609 ORTHO05D004185 1.3e-75 287.0 170 82.9
FvH4_3g09700 Fragaria vesca HOM05D003609 ORTHO05D004185 1.7e-75 286.6 170 82.4
FAN11G0451 Fragaria x ananassa HOM05D003609 ORTHO05D004185 1.7e-75 286.6 170 82.4
FAN25G3439 Fragaria x ananassa HOM05D003609 ORTHO05D004185 1.7e-75 286.6 170 82.4
AT4G05420 Arabidopsis thaliana HOM05D003609 ORTHO05D004185 2.2e-75 286.2 170 82.4
Thecc.02G010900 Theobroma cacao HOM05D003609 ORTHO05D004185 2.2e-75 286.2 170 82.4
Cfa000850 Carpinus fangiana HOM05D003609 ORTHO05D004185 2.8e-75 285.8 170 81.8
AUR62042762 Chenopodium quinoa HOM05D003609 ORTHO05D004185 2.8e-75 285.8 170 81.8
Duzib248G1499 Durio zibethinus HOM05D003609 ORTHO05D004185 2.8e-75 285.8 170 81.8
Sp6g03670 Schrenkiella parvula HOM05D003609 ORTHO05D004185 2.8e-75 285.8 170 82.4
AUR62042468 Chenopodium quinoa HOM05D003609 ORTHO05D004185 3.7e-75 285.4 170 81.2
Hund21559 Selenicereus undatus HOM05D003609 ORTHO05D004185 3.7e-75 285.4 170 81.2
CiPaw.10G086600 Carya illinoinensis HOM05D003609 ORTHO05D004185 4.8e-75 285.0 170 80.6
FAN16G3689 Fragaria x ananassa HOM05D003609 ORTHO05D004185 4.8e-75 285.0 170 81.8
QL07p044690 Quercus lobata HOM05D003609 ORTHO05D004185 4.8e-75 285.0 170 81.8
AL6G49010 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 6.3e-75 284.6 170 81.8
Carub.0006s3333 Capsella rubella HOM05D003609 ORTHO05D004185 6.3e-75 284.6 170 81.8
Haze_05753 Corylus avellana HOM05D003609 ORTHO05D004185 6.3e-75 284.6 170 81.2
Thhalv10028374m.g Eutrema salsugineum HOM05D003609 ORTHO05D004185 6.3e-75 284.6 170 81.8
FAN21G1100 Fragaria x ananassa HOM05D003609 ORTHO05D004185 6.3e-75 284.6 170 81.8
EL10Ac8g19595 Beta vulgaris HOM05D003609 ORTHO05D004185 8.2e-75 284.3 170 81.2
BcaC04g21393 Brassica carinata HOM05D003609 ORTHO05D004185 8.2e-75 284.3 167 82.6
A09p25340 Brassica napus HOM05D003609 ORTHO05D004185 8.2e-75 284.3 170 81.8
C09p32340 Brassica napus HOM05D003609 ORTHO05D004185 8.2e-75 284.3 170 81.8
BolC9t56079H Brassica oleracea HOM05D003609 ORTHO05D004185 8.2e-75 284.3 170 81.8
BraA09t38116Z Brassica rapa HOM05D003609 ORTHO05D004185 8.2e-75 284.3 170 81.8
CARHR252160 Cardamine hirsuta HOM05D003609 ORTHO05D004185 8.2e-75 284.3 170 81.8
AT4G21100 Arabidopsis thaliana HOM05D003609 ORTHO05D004185 1.1e-74 283.9 170 82.4
Prupe.4G088300 Prunus persica HOM05D003609 ORTHO05D004185 1.1e-74 283.9 170 81.2
Sabra16G0235700 Salix brachista HOM05D003609 ORTHO05D004185 1.1e-74 283.9 170 81.2
Aa31LG9G9160 Aethionema arabicum HOM05D003609 ORTHO05D004185 1.4e-74 283.5 170 81.8
Lj2C325T8 Lonicera japonica HOM05D003609 ORTHO05D004185 1.4e-74 283.5 170 82.4
AL7G33030 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 2.4e-74 282.7 170 81.8
Ah.14g086230 Amaranthus hybridus HOM05D003609 ORTHO05D004185 3.1e-74 282.3 170 81.2
Carub.0007s2033 Capsella rubella HOM05D003609 ORTHO05D004185 3.1e-74 282.3 170 81.8
Potri.001G357900 Populus trichocarpa HOM05D003609 ORTHO05D004185 3.1e-74 282.3 170 81.2
ClCG03G006390 Citrullus lanatus HOM05D003609 ORTHO05D004185 4.1e-74 282.0 170 80.6
Dinv32197 Davidia involucrata HOM05D003609 ORTHO05D004185 4.1e-74 282.0 170 82.4
MELO3C002793.2 Cucumis melo HOM05D003609 ORTHO05D004185 5.3e-74 281.6 170 80.0
CsaV3_1G037020 Cucumis sativus L. HOM05D003609 ORTHO05D004185 5.3e-74 281.6 170 80.0
Eucgr.H04822 Eucalyptus grandis HOM05D003609 ORTHO05D004185 5.3e-74 281.6 175 80.6
Medtr8g089380 Medicago truncatula HOM05D003609 ORTHO05D004185 5.3e-74 281.6 170 81.2
Nitab4.5_0000100g0230 Nicotiana tabacum HOM05D003609 ORTHO05D004185 5.3e-74 281.6 182 77.5
QL11p001509 Quercus lobata HOM05D003609 ORTHO05D004185 5.3e-74 281.6 170 81.2
Sc17g0004700 Simmondsia chinensis HOM05D003609 ORTHO05D004185 5.3e-74 281.6 170 80.6
TWI73G0261 Tripterygium wilfordii HOM05D003609 ORTHO05D004185 5.3e-74 281.6 170 79.4
Duzib132G1150 Durio zibethinus HOM05D003609 ORTHO05D004185 6.9e-74 281.2 170 81.2
HanXRQChr04g0113571 Helianthus annuus HOM05D003609 ORTHO05D004185 6.9e-74 281.2 170 81.2
Atru.chr10.947 Acer truncatum HOM05D003609 ORTHO05D004185 9.1e-74 280.8 170 80.6
VMungo0251G1043 Vigna mungo HOM05D003609 ORTHO05D004185 9.1e-74 280.8 170 81.8
Lalb_Chr07g0185651 Lupinus albus HOM05D003609 ORTHO05D004185 1.2e-73 280.4 170 81.2
Sed0022224 Sechium edule HOM05D003609 ORTHO05D004185 1.2e-73 280.4 170 80.0
TPR.G6260 Trifolium pratense HOM05D003609 ORTHO05D004185 1.5e-73 280.0 170 80.6
HanXRQChr15g0481541 Helianthus annuus HOM05D003609 ORTHO05D004185 2.0e-73 279.6 170 80.0
CANSAT35G1843 Cannabis sativa HOM05D003609 ORTHO05D004185 3.4e-73 278.9 170 80.0
BcaC01g00713 Brassica carinata HOM05D003609 ORTHO05D004185 1.3e-72 276.9 167 80.2
A08p15280 Brassica napus HOM05D003609 ORTHO05D004185 1.3e-72 276.9 170 79.4
C03p83520 Brassica napus HOM05D003609 ORTHO05D004185 1.3e-72 276.9 170 79.4
BolC3t20633H Brassica oleracea HOM05D003609 ORTHO05D004185 1.3e-72 276.9 170 79.4
BraA08t33506Z Brassica rapa HOM05D003609 ORTHO05D004185 1.3e-72 276.9 170 79.4
Lj4g0011653 Lotus japonicus HOM05D003609 ORTHO05D004185 1.3e-72 276.9 178 77.0
Glyma.U032008 Glycine max HOM05D003609 ORTHO05D004185 1.7e-72 276.6 170 80.6
Atru.chr10.954 Acer truncatum HOM05D003609 ORTHO05D004185 2.9e-72 275.8 170 79.4
BcaC01g00716 Brassica carinata HOM05D003609 ORTHO05D004185 2.9e-72 275.8 170 78.8
Sp7g19180 Schrenkiella parvula HOM05D003609 ORTHO05D004185 3.8e-72 275.4 170 80.0
Nitab4.5_0001633g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 5.0e-72 275.0 191 73.3
Lj4g0015667 Lotus japonicus HOM05D003609 ORTHO05D004185 8.5e-72 274.2 170 79.4
Peaxi162Scf00155g01114 Petunia axillaris HOM05D003609 ORTHO05D004185 8.5e-72 274.2 170 80.6
Duzib132G0117 Durio zibethinus HOM05D003609 ORTHO05D004185 1.1e-71 273.9 170 78.8
Phvul.002G252300 Phaseolus vulgaris HOM05D003609 ORTHO05D004185 1.4e-71 273.5 170 79.4
MD05G1276000 Malus domestica HOM05D003609 ORTHO05D004185 2.5e-71 272.7 170 77.6
Peaxi162Scf00213g01216 Petunia axillaris HOM05D003609 ORTHO05D004185 2.5e-71 272.7 170 79.4
CARHR227680 Cardamine hirsuta HOM05D003609 ORTHO05D004185 3.2e-71 272.3 170 78.8
Aqoxy1G01653 Aquilegia oxysepala HOM05D003609 ORTHO05D004185 5.5e-71 271.6 170 79.4
Thhalv10024273m.g Eutrema salsugineum HOM05D003609 ORTHO05D004185 5.5e-71 271.6 172 77.9
Psat7g060520 Pisum sativum HOM05D003609 ORTHO05D004185 7.2e-71 271.2 170 78.8
MBI18_g10584_MAGBIO Magnolia biondii HOM05D003609 ORTHO05D004185 9.4e-71 270.8 170 78.8
TAR624G1151 Trochodendron aralioides HOM05D003609 ORTHO05D004185 9.4e-71 270.8 167 79.6
Nn2g14648 Nelumbo nucifera HOM05D003609 ORTHO05D004185 2.1e-70 269.6 170 78.8
MD00G1109600 Malus domestica HOM05D003609 ORTHO05D004185 3.6e-70 268.9 170 76.5
TAR626G0448 Trochodendron aralioides HOM05D003609 ORTHO05D004185 4.7e-70 268.5 170 78.2
Nn7g36935 Nelumbo nucifera HOM05D003609 ORTHO05D004185 1.8e-69 266.5 170 78.2
PSO541G5911 Papaver somniferum HOM05D003609 ORTHO05D004185 3.0e-69 265.8 170 77.1
ATR0594G240 Amborella trichopoda HOM05D003609 ORTHO05D004185 3.9e-69 265.4 170 77.1
CDE02G3832 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 3.9e-69 265.4 170 76.5
PSO675G5242 Papaver somniferum HOM05D003609 ORTHO05D004185 3.9e-69 265.4 170 76.5
CDE01G0609 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 1.1e-68 263.8 170 75.9
CDE01G0431 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 4.4e-68 261.9 170 75.3
HPP92_020750 Vanilla planifolia HOM05D003609 ORTHO05D004185 1.3e-67 260.4 170 75.9
Os05g0592400 Oryza sativa ssp. japonica HOM05D003609 ORTHO05D004185 3.7e-67 258.8 171 75.4
SMO119G0053 Selaginella moellendorffii HOM05D003609 ORTHO05D004185 1.1e-66 257.3 170 74.1
Zm00001eb345240 Zea mays HOM05D003609 ORTHO05D004185 3.1e-66 255.8 171 74.9
Lj6g0025210 Lotus japonicus HOM05D003609 ORTHO05D004185 4.5e-65 251.9 172 73.3
Mapoly0054s0064 Marchantia polymorpha HOM05D003609 ORTHO05D004185 5.9e-65 251.5 170 72.9
Zm00001eb297320 Zea mays HOM05D003609 ORTHO05D004185 1.0e-64 250.8 175 73.1
AagrBONN_evm.TU.Sc2ySwM_228.4774 Anthoceros agrestis HOM05D003609 ORTHO05D004185 2.2e-64 249.6 167 71.9
Pp3c15_18160 Physcomitrium patens HOM05D003609 ORTHO05D004185 4.2e-63 245.4 186 66.1
Pp3c9_22270 Physcomitrium patens HOM05D003609 ORTHO05D004185 1.6e-62 243.4 167 71.3
vmacro03407 Vaccinium macrocarpon HOM05D003609 ORTHO05D004185 3.8e-56 222.2 170 68.2
CBR_g19725 Chara braunii HOM05D003609 ORTHO05D004185 2.5e-55 219.5 170 62.9
SEGI_12709 Sequoiadendron giganteum HOM05D003609 ORTHO05D004185 8.8e-53 211.1 131 76.3
MCO15G425 Micromonas commoda HOM05D003609 ORTHO05D004185 2.5e-47 193.0 171 53.8
Nitab4.5_0005101g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 6.3e-43 178.3 171 57.3
Peaxi162Scf00296g01317 Petunia axillaris HOM05D003609 ORTHO05D004185 8.3e-43 177.9 170 57.6
BcaC01g03282 Brassica carinata HOM05D003609 ORTHO05D004185 1.3e-40 170.6 167 53.3
CAN.G371.123 Capsicum annuum HOM05D003609 ORTHO05D004185 8.6e-40 167.9 170 54.7
BcaC01g03280 Brassica carinata HOM05D003609 ORTHO05D004185 2.1e-38 163.3 167 50.3
PRCOL_00006815 Prasinoderma coloniale HOM05D003609 ORTHO05D004185 2.2e-35 153.3 171 47.4
C03p54010 Brassica napus HOM05D003609 ORTHO05D004185 5.0e-32 142.1 145 51.7
Cre10.g432000 Chlamydomonas reinhardtii HOM05D003609 ORTHO05D004185 6.6e-32 141.7 159 47.8
Haze_26269 Corylus avellana HOM05D003609 ORTHO05D004185 1.5e-31 140.6 175 42.9
BolC3t17689H Brassica oleracea HOM05D003609 ORTHO05D004185 6.2e-30 135.2 145 49.7
BolC3t17696H Brassica oleracea HOM05D003609 ORTHO05D004185 2.3e-29 133.3 131 50.4
Ca_17799_v3 Cicer arietinum L. HOM05D003609 ORTHO05D004185 5.8e-28 128.6 90 70.0
arahy.Tifrunner.gnm1.ann1.92D3LZ Arachis hypogaea HOM05D003609 ORTHO05D004185 1.7e-27 127.1 164 47.6
SGA_v2.0_scaffold5530G54650 Striga asiatica HOM05D003609 ORTHO05D004185 1.7e-27 127.1 59 96.6
Cpa.g.sc17.69 Carica papaya HOM05D003609 ORTHO05D004185 3.7e-27 125.9 75 84.0
SGA_v2.0_scaffold139G35347 Striga asiatica HOM05D027160 ORTHO05D401825 1.4e-18 97.4 56 91.1
Carub.0006s3125 Capsella rubella HOM05D003609 ORTHO05D004185 1.2e-17 94.4 172 41.9
CAN.G1126.16 Capsicum annuum HOM05D003609 ORTHO05D004185 2.7e-17 93.2 81 56.8
Cfa022275 Carpinus fangiana HOM05D003609 ORTHO05D004185 4.7e-14 82.4 165 36.4
SGA_v2.0_scaffold316G48410 Striga asiatica HOM05D027160 ORTHO05D406197 4.7e-14 82.4 60 73.3
SGA_v2.0_scaffold1380G53931 Striga asiatica HOM05D027160 ORTHO05D399533 1.4e-13 80.9 41 95.1
TPR.G4955 Trifolium pratense HOM05D003609 ORTHO05D004185 1.8e-13 80.5 119 47.1
AL5G26110 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 9.9e-12 74.7 191 30.9
Oeu021730.2 Olea europaea HOM05D004403 ORTHO05D006164 7.3e-07 58.5 185 28.1
EL10Ac9g22433 Beta vulgaris HOM05D003609 ORTHO05D004185 2.1e-06 57.0 40 75.0
Glyma.09G153100 Glycine max HOM05D004403 ORTHO05D006164 2.1e-06 57.0 187 26.7
AT5G51660 Arabidopsis thaliana HOM05D004403 ORTHO05D006164 4.7e-06 55.8 192 26.0
Medtr6g461810 Medicago truncatula HOM05D004403 ORTHO05D006164 4.7e-06 55.8 187 26.2
AL8G25910 Arabidopsis lyrata HOM05D004403 ORTHO05D006164 6.2e-06 55.5 192 26.0
C03p36590 Brassica napus HOM05D003609 ORTHO05D041159 6.2e-06 55.5 35 74.3
BolC3t15974H Brassica oleracea HOM05D003140 ORTHO05D041159 6.2e-06 55.5 35 74.3
Carub.0008s1166 Capsella rubella HOM05D004403 ORTHO05D006164 6.2e-06 55.5 192 27.1
SEGI_12143 Sequoiadendron giganteum HOM05D003609 ORTHO05D004185 8.1e-06 55.1 40 70.0


User provided reference genes

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