Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold80G25762 Striga asiatica HOM05D000001 ORTHO05D402954 7.6e-55 216.9 104 100.0
unitig_744.g24648 Utricularia gibba HOM05D000001 ORTHO05D000003 1.6e-17 92.8 91 48.4
Migut.A01109 Erythranthe guttata HOM05D000001 ORTHO05D000003 4.1e-16 88.2 53 75.5
Sopen11g004750 Solanum pennellii HOM05D000001 ORTHO05D000003 5.9e-15 84.3 52 69.2
Solyc11g008970.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.7e-15 84.0 52 69.2
Peaxi162Scf00383g00035 Petunia axillaris HOM05D000001 ORTHO05D000003 6.5e-14 80.9 52 69.2
PGSC0003DMG400016163 Solanum tuberosum HOM05D000001 ORTHO05D000003 1.9e-13 79.3 52 67.3
CAN.G1177.5 Capsicum annuum HOM05D000001 ORTHO05D000003 2.5e-13 79.0 52 65.4
Nitab4.5_0004390g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.2e-13 78.2 52 65.4
Nitab4.5_0009796g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.6e-12 76.3 52 65.4
Cc07_g14990 Coffea canephora HOM05D000001 ORTHO05D000003 2.7e-12 75.5 53 60.4
COL.COLO4_27268 Corchorus olitorius HOM05D000001 ORTHO05D000003 7.9e-12 73.9 53 58.5
MELO3C034624.2 Cucumis melo HOM05D000001 ORTHO05D000003 5.1e-11 71.2 53 52.8
Oeu002331.1 Olea europaea HOM05D000001 ORTHO05D000003 5.1e-11 71.2 53 58.5
Sed0023141 Sechium edule HOM05D000001 ORTHO05D000003 6.7e-11 70.9 53 54.7
Rhsim09G0035100 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.1e-10 70.1 52 55.8
Duzib147G1494 Durio zibethinus HOM05D000001 ORTHO05D000003 1.5e-10 69.7 53 56.6
ECA248G1627 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.0e-10 69.3 53 54.7
CsaV3_2G036460 Cucumis sativus L. HOM05D000001 ORTHO05D000003 2.5e-10 68.9 53 50.9
Actinidia06555 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.3e-10 68.6 53 52.8
MBI02_g05740_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.7e-10 67.8 53 56.6
TPR.G30642 Trifolium pratense HOM05D000001 ORTHO05D000003 5.7e-10 67.8 54 50.0
GSVIVG01024493001 Vitis vinifera HOM05D000001 ORTHO05D000003 5.7e-10 67.8 53 54.7
Dinv08836 Davidia involucrata HOM05D000001 ORTHO05D000003 7.4e-10 67.4 53 52.8
CANSAT25G1447 Cannabis sativa HOM05D000001 ORTHO05D000003 9.7e-10 67.0 57 49.1
Gohir.A11G051700 Gossypium hirsutum HOM05D000001 ORTHO05D000003 9.7e-10 67.0 53 54.7
Gohir.D11G055100 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.3e-09 66.6 53 54.7
Gorai.007G060400 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.3e-09 66.6 53 54.7
Lsat_1_v5_gn_5_34541 Lactuca sativa HOM05D000001 ORTHO05D000003 1.3e-09 66.6 53 50.9
Prupe.6G189500 Prunus persica HOM05D000001 ORTHO05D000003 2.2e-09 65.9 53 49.1
TAR228G0001 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.2e-09 65.9 57 56.1
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.2e-09 65.9 57 56.1
Aqoxy6G00769 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 3.7e-09 65.1 53 52.8
Psat2g010600 Pisum sativum HOM05D000001 ORTHO05D000003 6.3e-09 64.3 48 52.1
Sc06g0001980 Simmondsia chinensis HOM05D000001 ORTHO05D000003 1.1e-08 63.5 52 50.0
CiPaw.04G101200 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.4e-08 63.2 53 49.1
Ca_06357_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.4e-08 63.2 48 50.0
HanXRQChr02g0032431 Helianthus annuus HOM05D000001 ORTHO05D000003 1.4e-08 63.2 53 47.2
Lj2P544T10 Lonicera japonica HOM05D000001 ORTHO05D000003 1.4e-08 63.2 53 50.9
Thecc.01G099200 Theobroma cacao HOM05D000001 ORTHO05D000003 1.4e-08 63.2 53 52.8
Sabra05G0060600 Salix brachista HOM05D000001 ORTHO05D000003 1.8e-08 62.8 53 47.2
TWI74G0215 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.8e-08 62.8 52 51.9
MD15G1322700 Malus domestica HOM05D000001 ORTHO05D016975 2.4e-08 62.4 53 45.3
Potri.005G074000 Populus trichocarpa HOM05D000001 ORTHO05D000003 3.1e-08 62.0 53 45.3
Rhsim01G0132900 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.1e-08 62.0 48 54.2
Lalb_Chr10g0107221 Lupinus albus HOM05D000001 ORTHO05D000003 6.9e-08 60.8 46 47.8
MD01G1032300 Malus domestica HOM05D000001 ORTHO05D000003 6.9e-08 60.8 53 45.3
EL10Ac2g03613 Beta vulgaris HOM05D000001 ORTHO05D000003 9.1e-08 60.5 53 49.1
Cpa.g.sc337.1 Carica papaya HOM05D000001 ORTHO05D000003 9.1e-08 60.5 53 47.2
QL06p048956 Quercus lobata HOM05D000001 ORTHO05D000003 9.1e-08 60.5 52 48.1
Haze_24901 Corylus avellana HOM05D000001 ORTHO05D000003 1.2e-07 60.1 52 48.1
FvH4_1g20620 Fragaria vesca HOM05D000001 ORTHO05D016975 1.2e-07 60.1 50 46.0
Medtr5g094220 Medicago truncatula HOM05D000001 ORTHO05D000003 1.2e-07 60.1 46 47.8
Phvul.009G088300 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.2e-07 60.1 54 44.4
SEGI_11106 Sequoiadendron giganteum HOM05D000001 ORTHO05D006265 1.2e-07 60.1 53 47.2
Aa31LG6G15310 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.5e-07 59.7 63 42.9
Glyma.04G062100 Glycine max HOM05D000001 ORTHO05D000003 1.5e-07 59.7 46 50.0
THA.LOC104807686 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.5e-07 59.7 53 45.3
Cfa002637 Carpinus fangiana HOM05D000001 ORTHO05D000003 2.0e-07 59.3 52 48.1
FAN19G0504 Fragaria x ananassa HOM05D000001 ORTHO05D006265 2.0e-07 59.3 50 46.0
FAN26G2740 Fragaria x ananassa HOM05D000001 ORTHO05D016975 2.0e-07 59.3 49 46.9
Os04g0463800 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 2.0e-07 59.3 53 43.4
QL06p049027 Quercus lobata HOM05D000001 ORTHO05D000003 2.0e-07 59.3 52 46.2
PGR102G2961 Punica granatum HOM05D000001 ORTHO05D000003 2.6e-07 58.9 53 49.1
arahy.Tifrunner.gnm1.ann1.97QYBJ Arachis hypogaea HOM05D000001 ORTHO05D000003 3.4e-07 58.5 46 47.8
arahy.Tifrunner.gnm1.ann1.LU4DEZ Arachis hypogaea HOM05D000001 ORTHO05D000003 3.4e-07 58.5 46 47.8
FAN16G1200 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.5e-07 58.2 95 29.5
VMungo1309G1796 Vigna mungo HOM05D000001 ORTHO05D000003 4.5e-07 58.2 46 50.0
AUR62020742 Chenopodium quinoa HOM05D000001 ORTHO05D000003 5.9e-07 57.8 53 45.3
Lj9P386T23 Lonicera japonica HOM05D000001 ORTHO05D048431 5.9e-07 57.8 53 45.3
Zm00001eb424400 Zea mays HOM05D000001 ORTHO05D000003 5.9e-07 57.8 53 45.3
Atru.chr4.20 Acer truncatum HOM05D000001 ORTHO05D000003 7.7e-07 57.4 51 45.1
AUR62021430 Chenopodium quinoa HOM05D000001 ORTHO05D009485 7.7e-07 57.4 53 45.3
PGR083G1045 Punica granatum HOM05D000001 ORTHO05D000003 7.7e-07 57.4 58 44.8
AUR62010897 Chenopodium quinoa HOM05D000001 ORTHO05D009485 1.0e-06 57.0 53 45.3
CsaV3_7G029070 Cucumis sativus L. HOM05D000001 ORTHO05D009986 1.0e-06 57.0 48 47.9
Eucgr.C04152 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.0e-06 57.0 84 34.5
Lj7E580T0 Lonicera japonica HOM05D000001 ORTHO05D009485 1.0e-06 57.0 53 47.2
LjContig00272g0018740 Lotus japonicus HOM05D000001 ORTHO05D000003 1.0e-06 57.0 54 46.3
Nn1g05375 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.0e-06 57.0 53 45.3
TAR623G0896 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.0e-06 57.0 97 30.9
vmacro00487 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.0e-06 57.0 54 50.0
Ah.08g218940 Amaranthus hybridus HOM05D000001 ORTHO05D000003 1.3e-06 56.6 53 47.2
AL1G22370 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 1.3e-06 56.6 94 33.0
AUR62027971 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.3e-06 56.6 53 43.4
Potri.001G369900 Populus trichocarpa HOM05D000001 ORTHO05D000003 1.3e-06 56.6 47 53.2
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.7e-06 56.2 53 47.2
Cc06_g10310 Coffea canephora HOM05D000001 ORTHO05D009485 2.2e-06 55.8 50 46.0
FAN16G2410 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.2e-06 55.8 47 48.9
Lj9P384T16 Lonicera japonica HOM05D000001 ORTHO05D009961 2.2e-06 55.8 53 43.4
FvH4_3g42650 Fragaria vesca HOM05D000001 ORTHO05D000003 2.9e-06 55.5 47 48.9
QL11p046815 Quercus lobata HOM05D000001 ORTHO05D009961 2.9e-06 55.5 53 41.5
SEGI_19807 Sequoiadendron giganteum HOM05D000001 ORTHO05D006265 2.9e-06 55.5 53 45.3
Solyc08g077320.3 Solanum lycopersicum HOM05D000001 ORTHO05D010065 2.9e-06 55.5 53 47.2
vmacro17406 Vaccinium macrocarpon HOM05D000057 ORTHO05D009961 2.9e-06 55.5 48 50.0
Eucgr.H04769 Eucalyptus grandis HOM05D000001 ORTHO05D000003 3.8e-06 55.1 50 46.0
FvH4_3g36560 Fragaria vesca HOM05D000001 ORTHO05D000003 3.8e-06 55.1 95 27.4
FvH4_3g36640 Fragaria vesca HOM05D000001 ORTHO05D000003 3.8e-06 55.1 95 27.4
FAN11G2918 Fragaria x ananassa HOM05D000001 ORTHO05D000413 3.8e-06 55.1 95 27.4
FAN21G2966 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.8e-06 55.1 95 27.4
Hma1.2p1_0008F-1.1_g005520 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 3.8e-06 55.1 53 47.2
MBI02_g39881_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D013373 3.8e-06 55.1 53 45.3
Manes.08G056300 Manihot esculenta HOM05D000001 ORTHO05D010694 3.8e-06 55.1 60 38.3
Haze_02223 Corylus avellana HOM05D001533 ORTHO05D009961 5.0e-06 54.7 53 41.5
FAN25G2779 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.0e-06 54.7 95 27.4
Nn1g05913 Nelumbo nucifera HOM05D000001 ORTHO05D009961 5.0e-06 54.7 53 41.5
Oeu057518.1 Olea europaea HOM05D000001 ORTHO05D000003 5.0e-06 54.7 53 45.3
PSO478G3891 Papaver somniferum HOM05D000001 ORTHO05D000003 5.0e-06 54.7 53 43.4
RcHm_v2.0_Chr5g0011421 Rosa chinensis HOM05D000001 ORTHO05D000003 5.0e-06 54.7 95 27.4
Atru.chr5.1204 Acer truncatum HOM05D000001 ORTHO05D009986 6.5e-06 54.3 49 42.9
AT4G39952 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 6.5e-06 54.3 53 35.8
MELO3C029238.2 Cucumis melo HOM05D000001 ORTHO05D009986 6.5e-06 54.3 48 45.8
Duzib187G1022 Durio zibethinus HOM05D000001 ORTHO05D009485 6.5e-06 54.3 53 47.2
ECA233G1412 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.5e-06 54.3 53 43.4
Lalb_Chr18g0054691 Lupinus albus HOM05D000001 ORTHO05D000003 6.5e-06 54.3 95 28.4
MBI02_g35320_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010258 6.5e-06 54.3 51 45.1
Hund07521 Selenicereus undatus HOM05D000001 ORTHO05D000003 6.5e-06 54.3 53 45.3
SEGI_09336 Sequoiadendron giganteum HOM05D000001 ORTHO05D004533 6.5e-06 54.3 49 49.0
SEGI_25251 Sequoiadendron giganteum HOM05D000001 ORTHO05D006265 6.5e-06 54.3 53 41.5
THA.LOC104800141 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 6.5e-06 54.3 53 47.2
THA.LOC104803863 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 6.5e-06 54.3 92 30.4
GSVIVG01014727001 Vitis vinifera HOM05D000001 ORTHO05D000003 6.5e-06 54.3 53 45.3
Atru.chr13.1288 Acer truncatum HOM05D000001 ORTHO05D009485 8.5e-06 53.9 53 45.3
Ah.11g043560 Amaranthus hybridus HOM05D000001 ORTHO05D000003 8.5e-06 53.9 53 43.4
EL10Ac4g08848 Beta vulgaris HOM05D000001 ORTHO05D000003 8.5e-06 53.9 53 41.5
CARHR011540 Cardamine hirsuta HOM05D000001 ORTHO05D000003 8.5e-06 53.9 87 32.2
CARHR246740 Cardamine hirsuta HOM05D000001 ORTHO05D000003 8.5e-06 53.9 53 34.0
Cfa011357 Carpinus fangiana HOM05D000001 ORTHO05D009485 8.5e-06 53.9 53 47.2
Ciclev10020732m.g Citrus clementina HOM05D000001 ORTHO05D009986 8.5e-06 53.9 52 40.4
COL.COLO4_31256 Corchorus olitorius HOM05D000001 ORTHO05D000003 8.5e-06 53.9 50 46.0
Dinv44704 Davidia involucrata HOM05D000001 ORTHO05D000003 8.5e-06 53.9 53 41.5
Duzib138G1633 Durio zibethinus HOM05D000001 ORTHO05D009986 8.5e-06 53.9 48 43.8
ECA248G2493 Erigeron canadensis HOM05D000001 ORTHO05D000003 8.5e-06 53.9 53 41.5
FvH4_4g05520 Fragaria vesca HOM05D000001 ORTHO05D010094 8.5e-06 53.9 57 45.6
FAN12G1913 Fragaria x ananassa HOM05D000001 ORTHO05D010094 8.5e-06 53.9 57 45.6
MBI01_g30448_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009485 8.5e-06 53.9 53 45.3
Nn6g35060 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.5e-06 53.9 53 43.4
Oeu017692.1 Olea europaea HOM05D000001 ORTHO05D000003 8.5e-06 53.9 53 45.3
PSO384G1726 Papaver somniferum HOM05D000001 ORTHO05D000003 8.5e-06 53.9 90 26.7
Sp7g35930 Schrenkiella parvula HOM05D000001 ORTHO05D000003 8.5e-06 53.9 53 37.7
Sopen08g025900 Solanum pennellii HOM05D000001 ORTHO05D010065 8.5e-06 53.9 53 49.1


User provided reference genes

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