Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03828 Striga asiatica HOM05D016705 ORTHO05D004689 2.1e-140 502.3 238 100.0
SGA_v2.0_scaffold7G03826 Striga asiatica HOM05D016705 ORTHO05D402039 8.9e-43 177.9 109 79.8
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 2.3e-14 83.6 109 46.8
SGA_v2.0_scaffold7G03737 Striga asiatica HOM05D016705 ORTHO05D400892 1.1e-13 81.3 76 50.0
SGA_v2.0_scaffold7G03736 Striga asiatica HOM05D016705 ORTHO05D402162 7.4e-13 78.6 76 47.4
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 7.6e-10 68.6 122 39.3
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 2.9e-09 66.6 111 35.1
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 3.8e-09 66.2 108 38.9
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 3.8e-09 66.2 108 38.9
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 8.4e-09 65.1 111 35.1
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.1e-08 64.7 111 36.9
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 1.4e-08 64.3 109 36.7
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 1.4e-08 64.3 109 36.7
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 1.9e-08 63.9 111 36.0
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 1.9e-08 63.9 111 35.1
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 2.5e-08 63.5 109 37.6
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 3.2e-08 63.2 108 37.0
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 4.2e-08 62.8 122 36.9
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 4.2e-08 62.8 102 36.3
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 7.1e-08 62.0 113 35.4
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 1.2e-07 61.2 111 35.1
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 1.2e-07 61.2 140 32.9
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.2e-07 61.2 103 37.9
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 1.6e-07 60.8 108 36.1
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.6e-07 60.8 109 35.8
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.1e-07 60.5 111 33.3
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 2.1e-07 60.5 111 32.4
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 2.1e-07 60.5 109 33.9
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 2.7e-07 60.1 109 33.9
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 2.7e-07 60.1 109 33.9
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.7e-07 60.1 110 32.7
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 2.7e-07 60.1 140 34.3
SGA_v2.0_scaffold7G03740 Striga asiatica HOM05D016705 ORTHO05D399076 2.7e-07 60.1 76 40.8
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 3.5e-07 59.7 105 37.1
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 3.5e-07 59.7 105 37.1
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 3.5e-07 59.7 112 33.9
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 3.5e-07 59.7 112 33.9
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 4.6e-07 59.3 126 33.3
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 4.6e-07 59.3 105 35.2
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 4.6e-07 59.3 109 33.9
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 6.0e-07 58.9 123 32.5
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 6.0e-07 58.9 108 35.2
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 6.0e-07 58.9 109 35.8
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 7.9e-07 58.5 105 36.2
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 1.3e-06 57.8 109 33.0
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 1.3e-06 57.8 109 33.0
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 1.3e-06 57.8 109 34.9
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 2.3e-06 57.0 109 35.8
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 2.3e-06 57.0 116 33.6
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 2.3e-06 57.0 107 34.6
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 2.3e-06 57.0 123 30.9
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 3.0e-06 56.6 109 32.1
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 3.0e-06 56.6 111 33.3
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 3.9e-06 56.2 109 34.9
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 6.7e-06 55.5 108 33.3
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 6.7e-06 55.5 109 34.9
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 8.7e-06 55.1 109 34.9
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 8.7e-06 55.1 109 33.0
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 8.7e-06 55.1 109 33.0
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 8.7e-06 55.1 109 33.0


User provided reference genes

Program Settings