Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.5e-185 652.9 389 100.0
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.7e-107 393.7 422 63.7
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 5.1e-104 382.1 406 63.3
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 4.0e-101 372.5 459 56.9
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 5.4e-98 362.1 414 58.2
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 8.7e-96 354.8 408 62.7
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 4.3e-95 352.4 424 55.4
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 9.6e-95 351.3 422 57.1
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 4.8e-94 349.0 418 58.1
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 6.2e-94 348.6 399 57.4
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.5e-92 344.0 428 53.0
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 5.8e-92 342.0 394 61.2
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 1.0e-91 341.3 442 58.6
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.2e-91 340.1 429 54.3
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 1.1e-90 337.8 390 56.9
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.4e-90 337.4 423 55.6
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 7.1e-90 335.1 421 57.5
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 9.3e-90 334.7 414 55.1
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.2e-89 334.3 419 57.5
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 2.7e-89 333.2 434 54.4
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 3.9e-88 329.3 449 54.8
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 5.1e-88 328.9 453 52.1
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.1e-87 327.8 421 56.3
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.1e-87 327.8 421 56.3
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 1.5e-87 327.4 447 53.2
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 2.5e-87 326.6 444 50.7
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 2.5e-87 326.6 441 51.9
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 3.3e-87 326.2 427 55.5
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 7.4e-87 325.1 395 53.7
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 1.8e-85 320.5 392 58.2
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 4.1e-85 319.3 399 56.4
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 6.9e-85 318.5 420 56.2
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 2.0e-84 317.0 436 48.6
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 2.0e-84 317.0 464 50.2
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 7.6e-84 315.1 394 59.6
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 1.7e-83 313.9 445 50.1
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 1.7e-83 313.9 480 49.0
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 2.9e-83 313.2 477 48.4
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 6.5e-83 312.0 459 48.6
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 7.1e-82 308.5 423 49.2
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 7.1e-82 308.5 487 45.2
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 2.7e-81 306.6 431 50.8
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 6.1e-81 305.4 431 48.0
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 6.1e-81 305.4 430 50.9
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 5.1e-80 302.4 510 47.1
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 6.7e-80 302.0 442 55.2
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 8.7e-80 301.6 442 50.2
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 8.7e-80 301.6 450 48.9
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 8.7e-80 301.6 442 50.0
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.1e-79 301.2 450 48.7
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 3.3e-79 299.7 489 44.4
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 5.7e-79 298.9 538 47.6
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 7.4e-79 298.5 452 48.0
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.3e-78 297.7 452 46.2
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 2.2e-78 297.0 533 45.6
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 2.8e-78 296.6 499 43.1
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 3.7e-78 296.2 426 54.2
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 3.7e-78 296.2 424 57.3
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 6.9e-77 292.0 444 45.3
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.5e-76 290.8 444 45.0
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 1.5e-76 290.8 513 47.0
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 5.9e-76 288.9 570 41.9
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 2.2e-75 287.0 501 47.1
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 2.9e-75 286.6 508 46.1
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 5.0e-75 285.8 464 43.8
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 5.0e-75 285.8 464 43.8
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 1.4e-74 284.3 562 44.3
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.9e-74 283.9 470 49.8
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 1.9e-74 283.9 467 52.7
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 5.5e-74 282.3 466 48.3
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 5.5e-74 282.3 441 46.9
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 9.4e-74 281.6 493 47.3
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 1.2e-73 281.2 414 50.5
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 2.1e-73 280.4 474 46.6
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 7.9e-73 278.5 422 51.4
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 5.1e-72 275.8 534 43.3
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 6.7e-72 275.4 420 51.9
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 1.5e-71 274.2 433 48.5
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 3.3e-71 273.1 503 41.9
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 9.7e-71 271.6 530 42.6
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 4.8e-70 269.2 466 50.4
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 3.4e-68 263.1 502 45.0
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 3.8e-67 259.6 579 41.1
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 8.5e-67 258.5 509 43.0
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 7.9e-65 251.9 577 38.3
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.4e-64 251.1 631 37.1
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 8.8e-64 248.4 474 40.1
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 8.8e-64 248.4 166 81.3
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 1.5e-63 247.7 598 38.3
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 3.3e-63 246.5 528 43.2
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 1.7e-62 244.2 541 40.3
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.7e-62 243.0 619 36.5
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 8.2e-62 241.9 597 36.0
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 1.2e-60 238.0 618 35.4
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.2e-60 238.0 618 35.4
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 1.2e-60 238.0 520 42.5
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 2.6e-60 236.9 544 40.1
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.5e-60 236.1 429 43.8
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 8.0e-57 225.3 215 61.4
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 2.3e-56 223.8 624 35.4
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 6.7e-56 222.2 522 36.2
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 3.1e-53 213.4 414 44.7
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 2.3e-48 197.2 164 66.5
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.5e-47 194.5 372 44.6
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 4.4e-47 193.0 325 44.6
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 1.2e-44 184.9 502 37.1
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 3.5e-44 183.3 361 46.0
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 5.0e-43 179.5 179 58.7
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 1.3e-38 164.9 182 53.8
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 1.0e-35 155.2 161 58.4
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.5e-34 151.4 171 55.0
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 5.6e-34 149.4 117 72.6
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 9.5e-34 148.7 93 83.9
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.6e-33 146.7 300 47.7
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.2e-31 141.7 93 82.8
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.5e-31 141.4 148 56.8
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 2.6e-31 140.6 82 87.8
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.9e-26 124.4 362 39.0
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 4.3e-26 123.2 103 66.0
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 2.0e-23 114.4 112 60.7
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 2.9e-22 110.5 227 41.9
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 7.0e-21 105.9 105 60.0
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 9.2e-21 105.5 168 38.7
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.6e-19 99.0 63 79.4
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.9e-18 97.8 101 52.5
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 5.6e-18 96.3 154 44.2
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 2.3e-16 90.9 57 82.5
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 8.9e-16 89.0 53 83.0
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 7.5e-15 85.9 153 43.8
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 1.3e-14 85.1 179 34.6
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.9e-14 83.2 108 45.4
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.6e-12 78.2 94 44.7
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.3e-11 74.3 60 66.7
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 5.2e-08 63.2 345 27.0
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 1.5e-07 61.6 123 37.4
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 4.4e-07 60.1 179 30.2


User provided reference genes

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