Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold79G25583 Striga asiatica HOM05D006490 ORTHO05D008301 3.2e-50 201.4 101 100.0
SGA_v2.0_scaffold166G38351 Striga asiatica HOM05D006490 ORTHO05D008301 1.3e-32 142.9 83 88.0
SGA_v2.0_scaffold153G37067 Striga asiatica HOM05D006490 ORTHO05D008301 2.5e-23 112.1 80 77.5
Migut.B01686 Erythranthe guttata HOM05D006490 ORTHO05D008301 1.7e-22 109.4 82 73.2
CsaV3_3G009300 Cucumis sativus L. HOM05D006490 ORTHO05D008301 3.7e-22 108.2 82 68.3
ClCG05G001900 Citrullus lanatus HOM05D006490 ORTHO05D008301 4.8e-22 107.8 82 68.3
MSTRG.17232 Avicennia marina HOM05D006490 ORTHO05D008301 5.3e-21 104.4 82 68.3
Atru.chr7.2364 Acer truncatum HOM05D006490 ORTHO05D008301 9.1e-21 103.6 86 62.8
MELO3C006150.2 Cucumis melo HOM05D006490 ORTHO05D008301 9.1e-21 103.6 82 67.1
Potri.014G077100 Populus trichocarpa HOM05D006490 ORTHO05D008301 9.1e-21 103.6 82 67.1
DCAR_023894 Daucus carota HOM05D006490 ORTHO05D008301 1.5e-20 102.8 82 64.6
Nitab4.5_0010430g0030 Nicotiana tabacum HOM05D006490 ORTHO05D008301 1.5e-20 102.8 82 65.9
Ciclev10020970m.g Citrus clementina HOM05D006490 ORTHO05D008301 2.0e-20 102.4 82 64.6
QL08p050661 Quercus lobata HOM05D006490 ORTHO05D008301 2.0e-20 102.4 82 67.1
SGA_v2.0_scaffold35G14106 Striga asiatica HOM05D006490 ORTHO05D405018 2.0e-20 102.4 58 89.7
HanXRQChr06g0169021 Helianthus annuus HOM05D006490 ORTHO05D008301 3.4e-20 101.7 82 64.6
Solyc01g091800.3 Solanum lycopersicum HOM05D006490 ORTHO05D008301 3.4e-20 101.7 80 65.0
Sopen01g037580 Solanum pennellii HOM05D006490 ORTHO05D008301 3.4e-20 101.7 80 65.0
PGSC0003DMG400017050 Solanum tuberosum HOM05D006490 ORTHO05D008301 3.4e-20 101.7 80 65.0
Manes.05G040300 Manihot esculenta HOM05D006490 ORTHO05D008301 4.5e-20 101.3 82 64.6
Nn1g01348 Nelumbo nucifera HOM05D006490 ORTHO05D008301 5.9e-20 100.9 82 64.6
Rhsim01G0155600 Rhododendron simsii HOM05D006490 ORTHO05D008301 5.9e-20 100.9 91 54.9
CAN.G170.51 Capsicum annuum HOM05D006490 ORTHO05D008301 7.7e-20 100.5 80 65.0
COL.COLO4_12627 Corchorus olitorius HOM05D006490 ORTHO05D008301 7.7e-20 100.5 82 63.4
EL10Ac1g00964 Beta vulgaris HOM05D006490 ORTHO05D008301 1.0e-19 100.1 91 58.2
TAR656G0005 Trochodendron aralioides HOM05D006490 ORTHO05D008301 1.0e-19 100.1 82 63.4
Haze_15229 Corylus avellana HOM05D006490 ORTHO05D008301 1.3e-19 99.8 81 63.0
TAR003G0001 Trochodendron aralioides HOM05D006490 ORTHO05D008301 1.7e-19 99.4 82 63.4
Nitab4.5_0004550g0090 Nicotiana tabacum HOM05D006490 ORTHO05D008301 2.2e-19 99.0 76 68.4
Thecc.01G368800 Theobroma cacao HOM05D006490 ORTHO05D008301 2.2e-19 99.0 82 62.2
AUR62033365 Chenopodium quinoa HOM05D006490 ORTHO05D008301 3.8e-19 98.2 82 61.0
Ah.05g176030 Amaranthus hybridus HOM05D006490 ORTHO05D008301 5.0e-19 97.8 82 62.2
arahy.Tifrunner.gnm1.ann1.M2DA0A Arachis hypogaea HOM05D006490 ORTHO05D008301 5.0e-19 97.8 82 64.6
CiPaw.01G053400 Carya illinoinensis HOM05D006490 ORTHO05D008301 5.0e-19 97.8 82 63.4
Lsat_1_v5_gn_7_8340 Lactuca sativa HOM05D006490 ORTHO05D008301 6.5e-19 97.4 82 61.0
Cfa004180 Carpinus fangiana HOM05D006490 ORTHO05D008301 8.5e-19 97.1 81 61.7
Actinidia33445 Actinidia chinensis HOM05D006490 ORTHO05D008301 1.1e-18 96.7 82 59.8
Aqoxy5G03982 Aquilegia oxysepala HOM05D006490 ORTHO05D008301 1.1e-18 96.7 80 62.5
Lalb_Chr01g0021141 Lupinus albus HOM05D006490 ORTHO05D008301 1.1e-18 96.7 82 64.6
TWI59G0097 Tripterygium wilfordii HOM05D006490 ORTHO05D008301 1.1e-18 96.7 82 61.0
Duzib138G1247 Durio zibethinus HOM05D006490 ORTHO05D008301 1.4e-18 96.3 82 61.0
Hma1.2p1_0398F.1_g143820 Hydrangea macrophylla HOM05D006490 ORTHO05D008301 1.4e-18 96.3 82 61.0
Glyma.18G227900 Glycine max HOM05D006490 ORTHO05D008301 1.9e-18 95.9 82 61.0
GSVIVG01027529001 Vitis vinifera HOM05D006490 ORTHO05D008301 1.9e-18 95.9 82 62.2
ATR0757G055 Amborella trichopoda HOM05D006490 ORTHO05D008301 2.5e-18 95.5 82 62.2
Glyma.09G264100 Glycine max HOM05D006490 ORTHO05D008301 2.5e-18 95.5 82 59.8
Gohir.D11G088800 Gossypium hirsutum HOM05D006490 ORTHO05D008301 2.5e-18 95.5 82 58.5
Gorai.007G094900 Gossypium raimondii HOM05D006490 ORTHO05D008301 2.5e-18 95.5 82 58.5
Peaxi162Scf00021g00524 Petunia axillaris HOM05D006490 ORTHO05D008301 2.5e-18 95.5 82 62.2
CANSAT56G3458 Cannabis sativa HOM05D006490 ORTHO05D008301 3.2e-18 95.1 82 59.8
VMungo1383G1476 Vigna mungo HOM05D006490 ORTHO05D008301 3.2e-18 95.1 82 61.0
CDE12G0440 Ceratophyllum demersum HOM05D006490 ORTHO05D008301 4.2e-18 94.7 82 62.2
Cc02_g37220 Coffea canephora HOM05D006490 ORTHO05D008301 4.2e-18 94.7 82 64.6
Cc02_g37650 Coffea canephora HOM05D006490 ORTHO05D008301 4.2e-18 94.7 82 64.6
AUR62004290 Chenopodium quinoa HOM05D006490 ORTHO05D008301 5.5e-18 94.4 76 63.2
Eucgr.D02236 Eucalyptus grandis HOM05D006490 ORTHO05D008301 5.5e-18 94.4 82 61.0
Lj1g0027165 Lotus japonicus HOM05D006490 ORTHO05D008301 5.5e-18 94.4 82 61.0
Medtr7g076280 Medicago truncatula HOM05D006490 ORTHO05D008301 5.5e-18 94.4 82 61.0
MD07G1128700 Malus domestica HOM05D006490 ORTHO05D008301 7.2e-18 94.0 82 62.2
Psat0s1132g0040 Pisum sativum HOM05D006490 ORTHO05D008301 7.2e-18 94.0 82 58.5
Gohir.A11G084700 Gossypium hirsutum HOM05D006490 ORTHO05D008301 9.4e-18 93.6 82 58.5
Prupe.2G154300 Prunus persica HOM05D006490 ORTHO05D008301 9.4e-18 93.6 82 62.2
RcHm_v2.0_Chr1g0352201 Rosa chinensis HOM05D006490 ORTHO05D008301 9.4e-18 93.6 82 59.8
TPR.G37730 Trifolium pratense HOM05D006490 ORTHO05D008301 9.4e-18 93.6 82 58.5
CSS0016422 Camellia sinensis var. sinensis HOM05D006490 ORTHO05D008301 1.2e-17 93.2 82 59.8
FAN10G3169 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.2e-17 93.2 82 59.8
Gorai.009G376300 Gossypium raimondii HOM05D006490 ORTHO05D008301 1.2e-17 93.2 77 59.7
Hund27326 Selenicereus undatus HOM05D006490 ORTHO05D008301 1.2e-17 93.2 79 60.8
Ca_07866_v3 Cicer arietinum L. HOM05D006490 ORTHO05D008301 1.6e-17 92.8 82 59.8
ECA236G2797 Erigeron canadensis HOM05D006490 ORTHO05D008301 1.6e-17 92.8 82 59.8
FAN10G0695 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.6e-17 92.8 82 59.8
Phvul.008G070300 Phaseolus vulgaris HOM05D006490 ORTHO05D008301 1.6e-17 92.8 82 59.8
C08p53880 Brassica napus HOM05D002904 ORTHO05D003206 2.1e-17 92.4 82 59.8
Thhalv10008101m.g Eutrema salsugineum HOM05D006490 ORTHO05D008301 2.1e-17 92.4 82 59.8
FvH4_7g13110 Fragaria vesca HOM05D006490 ORTHO05D008301 2.1e-17 92.4 82 58.5
FAN06G2547 Fragaria x ananassa HOM05D006490 ORTHO05D008301 2.1e-17 92.4 82 58.5
Lj9A577G54 Lonicera japonica HOM05D006490 ORTHO05D008301 2.1e-17 92.4 82 56.1
AL1G10470 Arabidopsis lyrata HOM05D006490 ORTHO05D008301 3.6e-17 91.7 82 57.3
PSO063G2041 Papaver somniferum HOM05D006490 ORTHO05D008301 3.6e-17 91.7 82 57.3
AT1G01860 Arabidopsis thaliana HOM05D006490 ORTHO05D008301 6.1e-17 90.9 82 57.3
BraA09t42265Z Brassica rapa HOM05D002904 ORTHO05D003206 6.1e-17 90.9 82 58.5
Carub.0001s0036 Capsella rubella HOM05D006490 ORTHO05D008301 6.1e-17 90.9 82 58.5
FAN03G0539 Fragaria x ananassa HOM05D006490 ORTHO05D008301 6.1e-17 90.9 82 58.5
Sc02g0002220 Simmondsia chinensis HOM05D006490 ORTHO05D008301 6.1e-17 90.9 80 58.8
FAN01G0731 Fragaria x ananassa HOM05D006490 ORTHO05D008301 7.9e-17 90.5 82 58.5
CARHR000480 Cardamine hirsuta HOM05D006490 ORTHO05D008301 1.0e-16 90.1 82 58.5
FAN06G1200 Fragaria x ananassa HOM05D006490 ORTHO05D008301 1.0e-16 90.1 79 58.2
Sp1g00430 Schrenkiella parvula HOM05D006490 ORTHO05D008301 1.0e-16 90.1 82 58.5
THA.LOC104814092 Tarenaya hassleriana HOM05D006490 ORTHO05D008301 1.4e-16 89.7 82 59.8
Aa31LG1G11190 Aethionema arabicum HOM05D006373 ORTHO05D008145 1.8e-16 89.4 82 57.3
CiPaw.01G023700 Carya illinoinensis HOM05D006490 ORTHO05D008301 6.7e-16 87.4 95 53.7
Oeu024418.2 Olea europaea HOM05D006490 ORTHO05D008301 6.7e-16 87.4 108 49.1
arahy.Tifrunner.gnm1.ann1.90SIZ3 Arachis hypogaea HOM05D006490 ORTHO05D008301 8.8e-16 87.0 99 53.5
Zm00001eb208500 Zea mays HOM05D006490 ORTHO05D008301 5.7e-15 84.3 82 52.4
vmacro20973 Vaccinium macrocarpon HOM05D006490 ORTHO05D008301 9.7e-15 83.6 114 41.2
Sabra14G0055100 Salix brachista HOM05D006490 ORTHO05D008301 1.4e-13 79.7 120 44.2
Pp3c10_22230 Physcomitrium patens HOM05D006490 ORTHO05D008301 1.8e-13 79.3 88 50.0
PGR031G3648 Punica granatum HOM05D006490 ORTHO05D008301 5.3e-13 77.8 82 54.9
Mapoly0057s0065 Marchantia polymorpha HOM05D006490 ORTHO05D008301 7.0e-13 77.4 82 50.0
BolC8t52902H Brassica oleracea HOM05D002904 ORTHO05D003206 9.1e-13 77.0 109 45.0
HPP92_016044 Vanilla planifolia HOM05D006490 ORTHO05D008301 3.5e-12 75.1 101 45.5
SMO244G0093 Selaginella moellendorffii HOM05D006490 ORTHO05D008301 7.7e-12 73.9 82 45.1
Sed0027884 Sechium edule HOM05D006490 ORTHO05D008301 1.1e-07 60.1 52 57.7
Dinv43755 Davidia involucrata HOM05D006490 ORTHO05D008301 1.5e-07 59.7 52 59.6


User provided reference genes

Program Settings