Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 0.0e+00 1099.0 653 100.0
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 8.7e-165 584.7 562 59.4
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 6.9e-162 575.1 577 61.0
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.6e-158 563.9 467 63.8
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 4.9e-144 515.8 536 52.6
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.8e-131 473.4 575 49.2
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 4.8e-131 472.6 588 47.4
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 6.9e-130 468.8 565 48.8
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.6e-126 457.6 602 44.5
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 8.2e-123 445.3 565 45.7
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 2.4e-122 443.7 592 46.1
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 4.2e-119 433.0 566 46.8
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 9.4e-119 431.8 553 47.6
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.2e-118 431.4 525 44.8
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.2e-118 431.4 573 45.4
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 1.6e-118 431.0 552 48.4
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 1.0e-117 428.3 584 46.4
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.3e-115 421.4 566 45.8
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 3.7e-115 419.9 553 44.3
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 6.3e-115 419.1 527 48.0
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.8e-114 417.5 581 44.9
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 7.0e-114 415.6 549 43.9
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 7.7e-113 412.1 605 40.2
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 2.9e-112 410.2 570 43.3
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 2.5e-111 407.1 558 45.0
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 6.1e-110 402.5 550 42.2
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 6.1e-110 402.5 557 44.3
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.4e-109 401.4 521 43.8
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.8e-109 401.0 557 44.2
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.2e-108 398.3 557 41.1
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 9.7e-108 395.2 544 42.8
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 9.7e-108 395.2 523 45.7
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.4e-106 391.3 556 45.0
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 2.4e-106 390.6 555 44.0
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.0e-104 385.2 527 43.1
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.3e-104 384.8 571 40.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.0e-104 382.9 564 40.1
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.1e-103 381.7 564 40.2
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 1.5e-103 381.3 576 39.8
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.5e-103 380.6 564 40.1
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 4.2e-103 379.8 539 42.7
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.5e-103 379.4 564 39.9
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.2e-102 378.3 552 41.8
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 8.0e-102 375.6 541 42.0
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 1.4e-101 374.8 533 43.9
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 4.0e-101 373.2 577 41.4
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 8.8e-101 372.1 522 44.4
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 1.5e-100 371.3 539 43.4
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 2.8e-99 367.1 577 43.2
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 6.3e-99 365.9 570 42.3
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.4e-98 364.0 566 40.1
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 2.9e-96 357.1 355 52.7
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.5e-95 354.8 556 40.5
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 4.2e-95 353.2 527 39.8
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.2e-94 351.7 580 39.8
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 5.2e-93 346.3 565 38.8
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 1.5e-92 344.7 402 46.5
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 5.7e-92 342.8 571 39.4
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.8e-91 340.5 577 39.9
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 2.8e-91 340.5 607 38.7
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 4.9e-91 339.7 543 40.7
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 7.0e-90 335.9 574 40.6
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.7e-89 334.0 572 38.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 5.9e-89 332.8 544 40.3
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 8.6e-88 328.9 400 44.0
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 2.8e-86 323.9 575 36.5
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 8.0e-86 322.4 575 39.1
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.0e-85 322.0 582 36.3
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 3.1e-85 320.5 594 35.7
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.2e-84 318.5 522 39.3
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.0e-84 317.8 534 40.3
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 3.4e-84 317.0 527 41.0
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 3.7e-83 313.5 544 40.6
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.4e-82 311.6 566 38.7
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 1.2e-81 308.5 489 38.0
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.3e-80 305.1 561 39.8
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 2.3e-80 304.3 542 38.9
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 3.9e-80 303.5 589 34.1
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 8.6e-80 302.4 561 40.1
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 3.3e-79 300.4 560 38.6
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 4.0e-77 293.5 568 38.0
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 2.0e-76 291.2 468 42.9
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 5.8e-76 289.7 372 50.0
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.7e-75 288.1 491 38.5
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 3.7e-75 287.0 400 46.0
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 7.1e-74 282.7 535 37.9
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.2e-73 282.0 575 37.2
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 6.0e-73 279.6 454 41.6
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 7.8e-73 279.3 407 45.2
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-70 271.9 341 42.5
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 5.1e-64 250.0 520 33.3
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 4.7e-62 243.4 515 32.0
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 3.1e-61 240.7 311 42.1
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.5e-60 238.4 564 32.3
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 5.8e-60 236.5 513 32.9
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.3e-59 235.3 254 49.2
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.4e-58 231.9 341 42.5
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 3.2e-58 230.7 350 39.1
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 6.0e-57 226.5 523 30.0
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 6.6e-56 223.0 581 29.1
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 3.3e-55 220.7 311 42.4
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.1e-53 214.2 248 46.8
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.4e-42 178.7 257 40.1
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 6.7e-40 169.9 393 30.8
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 1.5e-31 142.1 153 49.0
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 1.4e-29 135.6 296 31.8
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 8.7e-24 116.3 122 44.3
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.5e-23 115.5 223 38.6
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.2e-22 111.7 116 50.0
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 1.8e-21 108.6 339 30.4
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 5.3e-21 107.1 154 39.0
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 1.5e-20 105.5 140 42.1
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 2.9e-19 101.3 121 45.5
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.4e-18 99.0 121 40.5
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 5.5e-18 97.1 149 38.9
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 7.2e-18 96.7 123 45.5
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 2.1e-17 95.1 130 42.3
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 1.8e-16 92.0 100 46.0
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 5.1e-16 90.5 79 54.4
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 6.7e-16 90.1 145 37.9
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 1.1e-15 89.4 95 46.3
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 5.7e-15 87.0 120 36.7
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 7.4e-15 86.7 92 45.7
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 8.2e-14 83.2 118 43.2
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 8.2e-14 83.2 120 41.7
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 1.8e-13 82.0 126 34.9
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.9e-12 77.0 200 30.0
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 5.5e-10 70.5 178 32.6
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 1.6e-09 68.9 111 37.8
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 2.1e-09 68.6 51 60.8
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.8e-08 65.5 86 36.0
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 2.6e-07 61.6 44 61.4
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 2.6e-07 61.6 146 32.2
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 2.8e-06 58.2 78 41.0


User provided reference genes

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