Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 0.0e+00 1210.3 620 100.0
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 2.5e-294 1015.0 622 84.2
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.1e-291 1006.1 615 84.4
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 3.3e-283 978.0 678 75.5
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 2.4e-281 971.8 620 79.7
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 3.5e-280 968.0 616 80.5
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 3.8e-279 964.5 633 81.5
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 7.2e-278 960.3 622 79.1
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 7.2e-278 960.3 621 80.4
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.6e-277 959.1 622 79.6
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.1e-277 958.7 622 79.4
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 8.0e-277 956.8 620 79.5
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.5e-275 952.6 620 79.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.5e-275 952.6 620 79.4
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 3.4e-275 951.4 620 79.4
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 9.7e-275 949.9 620 79.2
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.8e-274 947.6 622 78.6
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.7e-271 939.1 613 77.8
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 3.8e-271 937.9 622 77.0
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.5e-270 936.0 622 77.5
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.9e-270 935.6 614 77.7
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.6e-269 932.6 622 77.3
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 6.1e-269 930.6 622 76.7
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.2e-267 926.4 622 76.4
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 9.8e-267 923.3 613 78.0
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 2.2e-266 922.2 622 76.2
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 5.4e-265 917.5 621 76.3
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 2.7e-264 915.2 613 76.5
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.5e-264 914.8 620 75.2
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.7e-263 912.5 622 75.6
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.9e-263 911.8 609 77.7
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 8.6e-263 910.2 611 76.9
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.1e-262 909.8 618 75.4
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 2.5e-262 908.7 646 73.2
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 5.5e-262 907.5 634 73.5
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 3.6e-261 904.8 622 74.9
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.1e-261 904.0 626 74.1
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 8.0e-261 903.7 620 74.8
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.4e-260 902.9 619 75.6
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.8e-260 902.5 622 73.6
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.3e-260 902.1 622 74.0
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 4.0e-260 901.4 589 79.1
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.5e-259 899.4 615 74.8
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 2.0e-259 899.0 614 75.2
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 7.5e-259 897.1 621 74.6
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 6.3e-258 894.0 623 74.2
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 6.3e-258 894.0 620 73.2
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 8.3e-258 893.6 622 74.0
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.4e-257 892.1 622 74.6
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 4.1e-257 891.3 659 72.8
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.7e-256 888.6 614 74.3
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 4.5e-256 887.9 612 74.8
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 7.8e-256 887.1 614 74.1
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 7.8e-256 887.1 613 74.2
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.7e-255 885.9 615 74.6
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 6.6e-255 884.0 622 72.3
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.1e-254 883.2 614 73.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 4.3e-254 881.3 622 72.3
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 4.3e-254 881.3 622 72.7
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.3e-254 880.6 614 74.6
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 2.1e-253 879.0 670 68.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 4.7e-253 877.9 615 73.7
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 6.1e-253 877.5 616 72.2
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.0e-252 876.7 616 72.4
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.4e-252 876.3 588 76.7
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 1.8e-252 875.9 622 71.7
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 2.3e-252 875.5 615 73.5
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 2.3e-252 875.5 612 74.3
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 6.8e-252 874.0 622 72.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.2e-251 873.2 641 71.3
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.2e-251 873.2 622 71.5
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.5e-251 872.8 617 72.0
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.5e-251 872.8 628 73.1
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-251 872.5 615 71.9
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.4e-251 871.7 615 71.9
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 3.4e-251 871.7 622 71.5
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 3.4e-251 871.7 622 71.2
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 4.4e-251 871.3 615 71.9
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 4.4e-251 871.3 615 71.7
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 4.4e-251 871.3 615 71.7
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 4.4e-251 871.3 615 71.7
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 4.4e-251 871.3 615 71.9
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 7.5e-251 870.5 615 72.0
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.3e-250 869.8 562 79.4
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 6.4e-250 867.5 613 72.3
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.9e-249 865.9 615 70.9
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 4.1e-249 864.8 622 71.2
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 3.0e-247 858.6 613 71.3
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.9e-247 858.2 617 70.5
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 1.1e-246 856.7 617 70.2
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.5e-246 855.5 617 70.8
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.1e-244 850.1 619 73.2
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.4e-244 849.7 656 67.8
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 6.8e-244 847.4 615 70.2
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.2e-243 846.7 703 64.9
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.5e-243 846.3 610 71.5
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.7e-242 842.8 607 71.5
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 2.9e-242 842.0 620 70.8
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 8.3e-242 840.5 620 70.6
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 1.1e-241 840.1 598 72.2
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 9.2e-241 837.0 638 68.2
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.8e-240 833.9 617 71.8
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 9.5e-238 827.0 582 72.5
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.8e-237 825.5 622 67.8
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.7e-234 816.2 589 73.0
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.9e-230 802.7 608 69.6
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.5e-230 802.4 614 69.2
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.2e-229 800.0 608 69.4
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.1e-228 797.0 494 82.0
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.5e-222 775.8 620 67.1
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.7e-215 753.1 504 74.8
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 7.6e-211 737.6 499 75.8
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 2.9e-210 735.7 618 61.8
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.9e-209 733.0 611 62.4
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.7e-207 724.5 619 62.5
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 9.6e-206 720.7 495 73.7
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.8e-189 665.2 566 64.0
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 2.0e-187 659.8 442 77.6
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.3e-183 646.4 442 73.8
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.7e-181 639.0 504 65.7
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.0e-166 590.1 625 50.4
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 4.2e-161 572.4 619 49.3
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 5.2e-159 565.5 589 50.6
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 5.4e-156 555.4 434 65.0
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 3.3e-145 519.6 367 73.0
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 1.6e-139 500.7 335 75.8
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.3e-138 497.7 418 62.9
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.1e-135 486.5 307 82.1
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.6e-134 483.4 624 44.2
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 7.8e-131 471.9 332 74.7
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 4.4e-126 456.1 593 42.8
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.4e-124 450.3 543 49.9
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 8.1e-112 408.7 277 76.9
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.1e-108 398.3 268 74.3
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.9e-105 387.5 441 51.0
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.7e-93 347.8 317 60.3
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 4.8e-88 329.7 284 63.4
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.4e-68 265.0 701 30.2
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.4e-65 253.4 201 69.2
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 3.1e-63 247.3 578 33.2
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 2.0e-62 244.6 164 73.8
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 2.9e-61 240.7 162 75.3
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 3.7e-56 223.8 170 67.6
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.7e-46 189.5 101 92.1
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.8e-45 187.2 107 86.9
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.8e-34 149.8 115 68.7
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 8.8e-34 149.4 626 25.7
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.5e-30 137.5 120 55.8
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.9e-29 134.4 186 43.0
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 2.9e-29 134.4 98 70.4
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.3e-24 119.0 99 59.6
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.7e-24 117.5 72 79.2
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 7.0e-23 113.2 73 71.2
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 3.3e-20 104.4 67 70.1
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 1.4e-18 99.0 194 35.6
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.2e-16 91.7 78 55.1
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 5.4e-15 87.0 49 85.7
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 7.0e-15 86.7 657 23.3
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 2.7e-14 84.7 48 85.4
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 3.5e-14 84.3 61 70.5
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.0e-13 82.8 89 55.1
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 2.5e-12 78.2 54 68.5
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 3.6e-11 74.3 71 47.9
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 8.1e-11 73.2 54 70.4
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.4e-10 72.4 54 70.4


User provided reference genes

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