Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23868 Striga asiatica HOM05D002292 ORTHO05D014741 3.4e-45 184.9 110 100.0
SGA_v2.0_scaffold70G23495 Striga asiatica HOM05D002292 ORTHO05D003256 1.3e-25 119.8 145 62.1
MSTRG.15130 Avicennia marina HOM05D002292 ORTHO05D003256 5.8e-21 104.4 145 55.2
SGA_v2.0_scaffold34G13924 Striga asiatica HOM05D002292 ORTHO05D003256 1.3e-20 103.2 145 55.9
Oeu036078.1 Olea europaea HOM05D002292 ORTHO05D003256 8.4e-20 100.5 146 54.1
Migut.M00151 Erythranthe guttata HOM05D002292 ORTHO05D003256 1.1e-19 100.1 145 56.6
Oeu016909.1 Olea europaea HOM05D002292 ORTHO05D003256 3.9e-17 91.7 146 51.4
SalBow7G1304 Salvia bowleyana HOM05D002292 ORTHO05D003256 2.8e-15 85.5 107 59.8
Eucgr.K01053 Eucalyptus grandis HOM05D002292 ORTHO05D003256 1.8e-14 82.8 133 48.9
CsaV3_7G003090 Cucumis sativus L. HOM05D002292 ORTHO05D003256 2.4e-14 82.4 143 48.3
PGR142G0833 Punica granatum HOM05D002292 ORTHO05D003256 5.2e-14 81.3 145 49.7
Ciclev10014210m.g Citrus clementina HOM05D002292 ORTHO05D003256 6.9e-14 80.9 145 51.0
Sed0000760 Sechium edule HOM05D002292 ORTHO05D003256 6.9e-14 80.9 145 49.7
Hund01060 Selenicereus undatus HOM05D002292 ORTHO05D003256 1.2e-13 80.1 138 51.4
MELO3C018868.2 Cucumis melo HOM05D002292 ORTHO05D003256 2.0e-13 79.3 143 49.0
Dinv01517 Davidia involucrata HOM05D002292 ORTHO05D003256 2.6e-13 79.0 145 51.0
Dinv10166 Davidia involucrata HOM05D002292 ORTHO05D003256 2.6e-13 79.0 145 51.0
Lj8C108T4 Lonicera japonica HOM05D002292 ORTHO05D003256 3.4e-13 78.6 145 49.7
Sc21g0003680 Simmondsia chinensis HOM05D002292 ORTHO05D003256 7.6e-13 77.4 145 48.3
TWI14G1271 Tripterygium wilfordii HOM05D002292 ORTHO05D003256 7.6e-13 77.4 145 49.0
Manes.12G089500 Manihot esculenta HOM05D002292 ORTHO05D003256 2.2e-12 75.9 145 49.0
Rhsim06G0137300 Rhododendron simsii HOM05D002292 ORTHO05D003256 2.2e-12 75.9 100 57.0
Atru.chr6.2873 Acer truncatum HOM05D002292 ORTHO05D003256 2.9e-12 75.5 145 50.3
CAN.G209.5 Capsicum annuum HOM05D002292 ORTHO05D003256 2.9e-12 75.5 141 48.2
Actinidia30455 Actinidia chinensis HOM05D002292 ORTHO05D014741 3.8e-12 75.1 67 74.6
Actinidia39328 Actinidia chinensis HOM05D002292 ORTHO05D003256 3.8e-12 75.1 104 51.0
ClCG02G002360 Citrullus lanatus HOM05D002292 ORTHO05D003256 3.8e-12 75.1 69 76.8
Cc05_g07700 Coffea canephora HOM05D002292 ORTHO05D003256 3.8e-12 75.1 146 49.3
Sed0014471 Sechium edule HOM05D002292 ORTHO05D003256 3.8e-12 75.1 143 48.3
AL3G53630 Arabidopsis lyrata HOM05D002292 ORTHO05D003256 4.9e-12 74.7 144 49.3
Nitab4.5_0006815g0020 Nicotiana tabacum HOM05D002292 ORTHO05D003256 4.9e-12 74.7 83 66.3
AUR62038984 Chenopodium quinoa HOM05D002292 ORTHO05D003256 6.4e-12 74.3 141 47.5
Cpa.g.c26338 Carica papaya HOM05D002292 ORTHO05D003256 8.4e-12 73.9 147 49.0
AT2G20580 Arabidopsis thaliana HOM05D002292 ORTHO05D003256 1.1e-11 73.6 144 47.9
Prupe.3G134800 Prunus persica HOM05D002292 ORTHO05D003256 1.1e-11 73.6 145 46.2
GSVIVG01020602001 Vitis vinifera HOM05D002292 ORTHO05D003256 1.4e-11 73.2 145 49.7
Lsat_1_v5_gn_6_65161 Lactuca sativa HOM05D002292 ORTHO05D003256 1.9e-11 72.8 136 50.0
THA.LOC104804050 Tarenaya hassleriana HOM05D002292 ORTHO05D003256 2.4e-11 72.4 146 47.3
AUR62036052 Chenopodium quinoa HOM05D002292 ORTHO05D003256 3.2e-11 72.0 141 46.8
PGSC0003DMG400021858 Solanum tuberosum HOM05D002292 ORTHO05D012147 3.2e-11 72.0 130 42.3
CANSAT64G2461 Cannabis sativa HOM05D002292 ORTHO05D003256 4.2e-11 71.6 138 43.5
Solyc07g053650.4 Solanum lycopersicum HOM05D002292 ORTHO05D003256 5.4e-11 71.2 141 45.4
Sopen07g027620 Solanum pennellii HOM05D002292 ORTHO05D003256 5.4e-11 71.2 141 45.4
Carub.0003s3506 Capsella rubella HOM05D002292 ORTHO05D003256 7.1e-11 70.9 139 49.6
CARHR111150 Cardamine hirsuta HOM05D002292 ORTHO05D003256 9.3e-11 70.5 139 49.6
Thhalv10001903m.g Eutrema salsugineum HOM05D002292 ORTHO05D003256 9.3e-11 70.5 144 48.6
Nn1g00672 Nelumbo nucifera HOM05D002292 ORTHO05D003256 9.3e-11 70.5 135 45.2
Nitab4.5_0000621g0140 Nicotiana tabacum HOM05D002292 ORTHO05D003256 9.3e-11 70.5 102 58.8
Nitab4.5_0002773g0020 Nicotiana tabacum HOM05D002292 ORTHO05D003256 9.3e-11 70.5 100 59.0
BcaC06g36750 Brassica carinata HOM05D002292 ORTHO05D003256 1.2e-10 70.1 144 47.9
BolC7t40489H Brassica oleracea HOM05D002292 ORTHO05D003256 1.2e-10 70.1 144 47.9
Peaxi162Scf00845g00118 Petunia axillaris HOM05D002292 ORTHO05D003256 1.6e-10 69.7 71 71.8
EL10Ac9g20812 Beta vulgaris HOM05D002292 ORTHO05D003256 2.1e-10 69.3 141 46.8
Nn6g33691 Nelumbo nucifera HOM05D002292 ORTHO05D003256 2.1e-10 69.3 141 41.1
Sp3g33820 Schrenkiella parvula HOM05D002292 ORTHO05D003256 2.1e-10 69.3 145 45.5
ATR0691G112 Amborella trichopoda HOM05D002292 ORTHO05D003256 2.7e-10 68.9 128 48.4
CAN.G782.27 Capsicum annuum HOM05D002292 ORTHO05D003256 2.7e-10 68.9 67 73.1
BcaB03g16854 Brassica carinata HOM05D002292 ORTHO05D003256 3.5e-10 68.6 130 48.5
BraA07t27810Z Brassica rapa HOM05D002292 ORTHO05D003256 3.5e-10 68.6 143 46.2
C07p00430 Brassica napus HOM05D002292 ORTHO05D003256 4.6e-10 68.2 144 47.2
MD09G1242100 Malus domestica HOM05D002292 ORTHO05D003256 4.6e-10 68.2 145 44.1
PGSC0003DMG402009395 Solanum tuberosum HOM05D002292 ORTHO05D003256 7.8e-10 67.4 141 44.0
TAR369G0508 Trochodendron aralioides HOM05D002292 ORTHO05D003256 7.8e-10 67.4 142 46.5
FAN12G0742 Fragaria x ananassa HOM05D002292 ORTHO05D003256 1.0e-09 67.0 61 67.2
TWI23G0418 Tripterygium wilfordii HOM05D002292 ORTHO05D003256 1.0e-09 67.0 145 46.2
A07p00160 Brassica napus HOM05D002292 ORTHO05D003256 1.3e-09 66.6 143 44.8
CSS0001743 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 1.3e-09 66.6 140 45.7
Carub.0007s1223 Capsella rubella HOM05D002292 ORTHO05D003256 1.3e-09 66.6 72 72.2
MD17G1234500 Malus domestica HOM05D002292 ORTHO05D003256 1.3e-09 66.6 145 43.4
Sp7g26440 Schrenkiella parvula HOM05D002292 ORTHO05D003256 3.9e-09 65.1 105 54.3
Aa31LG2G21960 Aethionema arabicum HOM05D002292 ORTHO05D003256 5.1e-09 64.7 138 47.8
Thhalv10024363m.g Eutrema salsugineum HOM05D002292 ORTHO05D003256 5.1e-09 64.7 105 53.3
Nitab4.5_0022667g0010 Nicotiana tabacum HOM05D002292 ORTHO05D014741 5.1e-09 64.7 71 71.8
PSO339G0848 Papaver somniferum HOM05D002292 ORTHO05D003256 5.1e-09 64.7 128 44.5
PSO384G0954 Papaver somniferum HOM05D002292 ORTHO05D003256 5.1e-09 64.7 128 44.5
ATR0706G164 Amborella trichopoda HOM05D002292 ORTHO05D012147 6.6e-09 64.3 135 46.7
BcaNung01564 Brassica carinata HOM05D002292 ORTHO05D003256 6.6e-09 64.3 105 53.3
C01p11030 Brassica napus HOM05D002292 ORTHO05D003256 6.6e-09 64.3 105 53.3
BolC1t01065H Brassica oleracea HOM05D002292 ORTHO05D003256 6.6e-09 64.3 105 53.3
Cfa023332 Carpinus fangiana HOM05D002292 ORTHO05D003256 6.6e-09 64.3 141 40.4
CiPaw.03G181100 Carya illinoinensis HOM05D002292 ORTHO05D003256 6.6e-09 64.3 146 42.5
Aqoxy3G02563 Aquilegia oxysepala HOM05D002292 ORTHO05D003256 8.7e-09 63.9 134 42.5
Potri.007G137200 Populus trichocarpa HOM05D002292 ORTHO05D003256 8.7e-09 63.9 145 45.5
SHI10490 Sapria himalayana HOM05D002292 ORTHO05D014741 8.7e-09 63.9 54 68.5
Sopen10g004040 Solanum pennellii HOM05D002292 ORTHO05D003256 8.7e-09 63.9 143 38.5
BcaC09g51648 Brassica carinata HOM05D002292 ORTHO05D003256 1.1e-08 63.5 105 53.3
CARHR236240 Cardamine hirsuta HOM05D002292 ORTHO05D003256 1.1e-08 63.5 105 53.3
Peaxi162Scf00059g00918 Petunia axillaris HOM05D002292 ORTHO05D003256 1.5e-08 63.2 61 77.0
Potri.017G014800 Populus trichocarpa HOM05D002292 ORTHO05D003256 1.5e-08 63.2 138 45.7
AL7G24090 Arabidopsis lyrata HOM05D002292 ORTHO05D003256 1.9e-08 62.8 105 53.3
A03p58120 Brassica napus HOM05D002292 ORTHO05D003256 2.5e-08 62.4 105 52.4
BolC3t16989H Brassica oleracea HOM05D002292 ORTHO05D012147 2.5e-08 62.4 72 70.8
BolC7t43283H Brassica oleracea HOM05D002292 ORTHO05D012147 2.5e-08 62.4 105 53.3
BraA03t14878Z Brassica rapa HOM05D002292 ORTHO05D003256 2.5e-08 62.4 105 52.4
MBI04_g03345_MAGBIO Magnolia biondii HOM05D002292 ORTHO05D003256 3.3e-08 62.0 64 62.5
AT4G28470 Arabidopsis thaliana HOM05D002292 ORTHO05D003256 4.3e-08 61.6 105 52.4
A02p21350 Brassica napus HOM05D001899 ORTHO05D001858 4.3e-08 61.6 67 71.6
BraA03t11347Z Brassica rapa HOM05D001899 ORTHO05D014741 4.3e-08 61.6 67 71.6
BraA06t25633Z Brassica rapa HOM05D002292 ORTHO05D014741 4.3e-08 61.6 67 71.6
CiPaw.04G128800 Carya illinoinensis HOM05D002292 ORTHO05D003256 4.3e-08 61.6 146 45.2
Manes.13G142400 Manihot esculenta HOM05D002292 ORTHO05D003256 4.3e-08 61.6 142 36.6
BcaC06g32618 Brassica carinata HOM05D002292 ORTHO05D003256 5.6e-08 61.2 105 52.4
A01p09480 Brassica napus HOM05D002292 ORTHO05D003256 5.6e-08 61.2 105 52.4
C08p27130 Brassica napus HOM05D001899 ORTHO05D001858 5.6e-08 61.2 80 65.0
BraA01t00890Z Brassica rapa HOM05D002292 ORTHO05D003256 5.6e-08 61.2 105 52.4
Duzib052G0792 Durio zibethinus HOM05D002292 ORTHO05D003256 5.6e-08 61.2 142 37.3
Duzib248G0284 Durio zibethinus HOM05D002292 ORTHO05D003256 5.6e-08 61.2 142 45.1
TPR.G9354 Trifolium pratense HOM05D002292 ORTHO05D003256 5.6e-08 61.2 147 38.1
BcaB03g12574 Brassica carinata HOM05D002292 ORTHO05D003256 7.3e-08 60.8 139 42.4
Lj3g0005030 Lotus japonicus HOM05D002292 ORTHO05D003256 7.3e-08 60.8 147 38.8
THA.LOC104824690 Tarenaya hassleriana HOM05D002292 ORTHO05D003256 7.3e-08 60.8 150 40.0
A08p20050 Brassica napus HOM05D002292 ORTHO05D003256 9.6e-08 60.5 139 41.0
C07p27520 Brassica napus HOM05D002292 ORTHO05D012147 9.6e-08 60.5 105 52.4
Haze_13365 Corylus avellana HOM05D002292 ORTHO05D003256 1.3e-07 60.1 103 50.5
Glyma.06G289400 Glycine max HOM05D002292 ORTHO05D003256 1.3e-07 60.1 147 38.8
Glyma.12G117600 Glycine max HOM05D002292 ORTHO05D003256 1.3e-07 60.1 147 38.8
Lalb_Chr03g0029631 Lupinus albus HOM05D002292 ORTHO05D003256 1.3e-07 60.1 148 38.5
Thecc.02G185600 Theobroma cacao HOM05D002292 ORTHO05D003256 1.3e-07 60.1 142 44.4
COL.COLO4_18044 Corchorus olitorius HOM05D002292 ORTHO05D003256 1.6e-07 59.7 102 44.1
ECA246G1445 Erigeron canadensis HOM05D002292 ORTHO05D003256 1.6e-07 59.7 140 41.4
FAN02G3233 Fragaria x ananassa HOM05D002292 ORTHO05D003256 1.6e-07 59.7 145 44.1
Gohir.A01G019500 Gossypium hirsutum HOM05D002292 ORTHO05D003256 1.6e-07 59.7 123 49.6
Gorai.002G020200 Gossypium raimondii HOM05D002292 ORTHO05D003256 1.6e-07 59.7 123 49.6
RcHm_v2.0_Chr2g0127201 Rosa chinensis HOM05D002292 ORTHO05D003256 1.6e-07 59.7 145 44.1
A06p20880 Brassica napus HOM05D002292 ORTHO05D014741 2.1e-07 59.3 67 70.1
C05p41580 Brassica napus HOM05D002292 ORTHO05D012147 2.1e-07 59.3 105 51.4
C07p56240 Brassica napus HOM05D002292 ORTHO05D003256 2.1e-07 59.3 105 51.4
BolC8t48762H Brassica oleracea HOM05D002292 ORTHO05D003256 2.1e-07 59.3 139 41.0
Medtr4g078780 Medicago truncatula HOM05D002292 ORTHO05D003256 2.1e-07 59.3 149 38.3
BcaC06g34529 Brassica carinata HOM05D002292 ORTHO05D012147 2.8e-07 58.9 105 52.4
HanXRQChr17g0541921 Helianthus annuus HOM05D002292 ORTHO05D003256 2.8e-07 58.9 140 45.0
Lalb_Chr19g0135111 Lupinus albus HOM05D002292 ORTHO05D003256 2.8e-07 58.9 150 38.7
BolC7t46102H Brassica oleracea HOM05D002292 ORTHO05D003256 3.6e-07 58.5 105 50.5
C08p23100 Brassica napus HOM05D001899 ORTHO05D001858 4.8e-07 58.2 80 63.8
HanXRQChr11g0326301 Helianthus annuus HOM05D002292 ORTHO05D003256 4.8e-07 58.2 142 41.5
BcaNung05132 Brassica carinata HOM05D001899 ORTHO05D001858 6.2e-07 57.8 80 63.8
Ca_18922_v3 Cicer arietinum L. HOM05D002292 ORTHO05D003256 6.2e-07 57.8 148 37.2
Gohir.D01G018000 Gossypium hirsutum HOM05D002292 ORTHO05D003256 6.2e-07 57.8 123 45.5
Lalb_Chr01g0005091 Lupinus albus HOM05D002292 ORTHO05D003256 6.2e-07 57.8 145 37.2
Sabra07G0110300 Salix brachista HOM05D002292 ORTHO05D003256 6.2e-07 57.8 155 40.0
VMungo1127G1900 Vigna mungo HOM05D002292 ORTHO05D003256 6.2e-07 57.8 147 38.1
Sabra17G0012000 Salix brachista HOM05D002292 ORTHO05D003256 8.1e-07 57.4 134 44.8
HPP92_006722 Vanilla planifolia HOM05D002292 ORTHO05D003256 1.4e-06 56.6 132 43.2
FvH4_6g26640 Fragaria vesca HOM05D002292 ORTHO05D003256 1.8e-06 56.2 145 43.4
FAN09G0797 Fragaria x ananassa HOM05D002292 ORTHO05D003256 1.8e-06 56.2 145 43.4
FAN14G5439 Fragaria x ananassa HOM05D002292 ORTHO05D003256 1.8e-06 56.2 145 43.4
Psat7g137480 Pisum sativum HOM05D002292 ORTHO05D003256 1.8e-06 56.2 148 36.5
HPP92_006718 Vanilla planifolia HOM05D002292 ORTHO05D003256 2.4e-06 55.8 102 42.2
BraA08t33964Z Brassica rapa HOM05D002292 ORTHO05D003256 3.1e-06 55.5 140 40.0
Phvul.L001621 Phaseolus vulgaris HOM05D002292 ORTHO05D003256 3.1e-06 55.5 147 37.4
A02p31100 Brassica napus HOM05D002292 ORTHO05D012147 4.0e-06 55.1 105 50.5
TAR369G0796 Trochodendron aralioides HOM05D002292 ORTHO05D003256 4.0e-06 55.1 102 42.2
Aqoxy4G01267 Aquilegia oxysepala HOM05D002292 ORTHO05D003256 5.3e-06 54.7 119 42.9
C06p15720 Brassica napus HOM05D001899 ORTHO05D001858 5.3e-06 54.7 80 61.2
PSO210G2625 Papaver somniferum HOM05D002292 ORTHO05D003256 5.3e-06 54.7 134 44.0
Ah.01g015420 Amaranthus hybridus HOM05D002292 ORTHO05D003256 6.9e-06 54.3 109 49.5
SEGI_41616 Sequoiadendron giganteum HOM05D002292 ORTHO05D003256 6.9e-06 54.3 146 38.4
QL08p040049 Quercus lobata HOM05D002292 ORTHO05D003256 9.0e-06 53.9 95 43.2
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 9.0e-06 53.9 95 43.2


User provided reference genes

Program Settings