Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 0.0e+00 1088.9 527 100.0
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 2.3e-256 888.6 575 76.0
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.3e-251 872.8 574 74.2
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 6.0e-241 837.4 575 71.1
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 5.8e-236 820.8 564 71.1
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 7.6e-236 820.5 575 69.4
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 4.9e-235 817.8 566 70.1
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 1.1e-234 816.6 567 70.2
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.9e-234 815.8 580 68.6
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 4.2e-234 814.7 566 69.8
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 5.4e-234 814.3 564 69.7
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 5.4e-234 814.3 576 69.4
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 2.7e-233 812.0 560 69.5
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 1.0e-232 810.1 576 69.1
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 1.3e-232 809.7 566 69.6
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.3e-232 809.7 576 69.1
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 2.3e-232 808.9 567 69.7
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 8.7e-232 807.0 566 69.6
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 3.3e-231 805.1 566 68.9
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 9.6e-231 803.5 567 70.0
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 2.8e-230 802.0 567 70.0
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 4.8e-230 801.2 567 69.8
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.1e-229 800.0 568 70.1
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.4e-229 798.9 567 69.7
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 3.1e-229 798.5 565 68.7
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.4e-228 795.0 576 68.1
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.7e-227 792.7 566 68.7
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.2e-227 792.3 567 68.1
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 4.2e-226 788.1 564 67.7
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 4.6e-225 784.6 572 66.4
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 4.6e-225 784.6 566 67.3
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.7e-224 780.8 554 69.0
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 8.7e-224 780.4 564 67.4
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.1e-223 780.0 575 67.3
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 5.6e-223 777.7 549 69.2
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 9.6e-223 776.9 561 68.1
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 9.6e-223 776.9 566 67.1
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.8e-222 775.4 563 67.3
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.4e-221 772.3 538 69.7
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 5.3e-221 771.2 572 66.1
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 2.6e-220 768.8 566 66.6
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 3.4e-220 768.5 575 64.7
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 3.4e-220 768.5 565 66.4
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 1.3e-219 766.5 583 65.2
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.7e-219 766.1 566 66.8
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 1.7e-219 766.1 566 66.4
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 2.9e-219 765.4 555 69.0
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.8e-219 765.0 567 67.9
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 8.4e-219 763.8 567 66.0
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 8.4e-219 763.8 563 66.4
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.1e-218 763.5 566 67.7
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 1.4e-218 763.1 583 64.0
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.9e-218 762.7 568 66.5
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 4.2e-218 761.5 599 63.1
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 5.5e-218 761.1 568 65.5
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 5.5e-218 761.1 564 67.6
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 9.3e-218 760.4 566 65.9
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.2e-217 760.0 566 67.3
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 3.5e-217 758.4 568 66.2
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 3.5e-217 758.4 567 66.1
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 1.0e-216 756.9 579 64.6
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 3.0e-216 755.4 568 66.4
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 3.0e-216 755.4 567 65.6
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.9e-216 755.0 564 66.1
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 3.9e-216 755.0 566 65.5
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 5.1e-216 754.6 563 64.8
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.5e-215 753.1 561 65.8
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 3.3e-215 751.9 572 64.5
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 3.3e-215 751.9 563 65.7
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 9.6e-215 750.4 561 65.4
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 1.3e-214 750.0 567 65.6
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 2.1e-214 749.2 566 64.8
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 6.2e-214 747.7 569 65.4
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.1e-213 746.9 565 65.1
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 9.0e-213 743.8 569 65.2
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 1.2e-212 743.4 532 68.6
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 1.2e-212 743.4 566 65.0
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 1.5e-212 743.0 566 64.7
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.6e-212 742.3 564 65.2
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 4.5e-212 741.5 562 66.0
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 7.6e-212 740.7 556 66.2
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.2e-211 739.2 565 64.4
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 2.2e-211 739.2 565 64.1
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 3.8e-211 738.4 565 65.3
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 8.4e-211 737.3 558 65.6
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.4e-210 736.5 556 66.2
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 4.2e-210 734.9 556 65.6
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 4.2e-210 734.9 556 65.6
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 7.1e-210 734.2 550 65.8
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 9.3e-210 733.8 554 65.2
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 1.0e-208 730.3 548 65.5
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 3.0e-208 728.8 566 64.7
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.0e-208 728.8 579 62.5
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 1.1e-207 726.9 567 64.0
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 1.1e-207 726.9 567 63.0
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 4.3e-207 724.9 564 64.0
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 9.7e-207 723.8 565 63.7
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 8.2e-206 720.7 567 63.5
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.1e-205 720.3 565 63.7
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 1.1e-205 720.3 565 63.7
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.1e-205 720.3 565 63.7
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 2.4e-205 719.2 567 63.5
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 1.1e-202 710.3 567 63.8
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.9e-202 709.5 574 63.4
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 4.2e-202 708.4 565 62.8
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.0e-200 703.7 533 65.7
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.4e-200 703.4 565 62.5
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 2.3e-200 702.6 574 61.7
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 3.0e-200 702.2 591 61.3
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 5.1e-200 701.4 559 63.5
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.7e-200 701.0 526 66.5
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 6.9e-197 691.0 525 64.6
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.1e-194 683.7 536 64.7
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.4e-194 683.3 551 64.2
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 1.6e-193 679.9 564 61.2
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 6.7e-192 674.5 563 61.5
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 3.7e-190 668.7 577 60.3
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 1.1e-189 667.2 510 66.7
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.7e-185 652.5 533 63.6
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 6.1e-185 651.4 551 61.5
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 5.2e-184 648.3 529 60.5
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 2.0e-183 646.4 543 62.2
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 6.3e-182 641.3 567 59.4
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.0e-179 631.7 460 70.0
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 8.6e-155 551.2 558 52.2
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 5.6e-154 548.5 584 50.9
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 5.6e-154 548.5 599 50.8
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.1e-153 546.6 585 52.3
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 2.9e-150 536.2 416 65.1
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.2e-145 520.8 342 71.9
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.9e-131 472.6 353 65.7
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 4.4e-127 459.1 317 73.8
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 5.8e-127 458.8 328 66.2
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 3.1e-112 409.8 332 62.3
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.1e-109 401.4 257 78.2
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.4e-101 374.4 319 61.4
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 4.1e-96 356.3 278 65.1
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 2.1e-84 317.4 285 57.5
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.6e-79 300.4 224 65.2
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.5e-71 273.5 294 52.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 8.5e-70 268.9 201 65.2
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 1.7e-65 254.6 162 80.9
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.9e-63 246.1 215 55.3
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 6.1e-60 236.1 205 61.5
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 3.2e-53 213.8 588 28.9
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 6.3e-49 199.5 131 78.6
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 2.7e-47 194.1 137 66.4
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 6.8e-43 179.5 454 29.5
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 3.6e-36 157.1 227 39.6
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.2e-34 152.1 97 73.2
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.0e-34 151.4 119 61.3
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 6.4e-33 146.4 100 65.0
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.3e-30 138.7 139 50.4
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 1.4e-27 128.6 115 52.2
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.8e-26 123.2 121 47.9
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 4.1e-24 117.1 168 41.7
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 7.8e-15 86.3 53 64.2
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 3.9e-14 84.0 56 67.9
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 2.0e-10 71.6 61 54.1
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.3e-09 68.9 43 69.8
ATR0326G031 Amborella trichopoda HOM05D000082 ORTHO05D014356 8.7e-06 56.2 56 37.5
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 8.7e-06 56.2 49 42.9
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 8.7e-06 56.2 49 42.9


User provided reference genes

Program Settings