Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 7.8e-73 276.9 131 100.0
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 2.7e-49 198.7 131 78.6
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.7e-32 142.9 127 58.3
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 4.3e-31 138.3 132 58.3
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 2.8e-30 135.6 121 61.2
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 6.4e-27 124.4 137 51.8
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 6.4e-27 124.4 121 53.7
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 3.2e-26 122.1 116 55.2
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 5.5e-26 121.3 121 54.5
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 7.1e-26 120.9 121 52.9
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 9.3e-26 120.6 131 51.9
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 1.2e-25 120.2 131 51.9
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.2e-25 120.2 131 51.9
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.2e-25 120.2 116 56.0
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.7e-25 119.0 121 52.1
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 2.7e-25 119.0 131 52.7
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 2.7e-25 119.0 131 52.7
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 2.7e-25 119.0 131 52.7
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 3.5e-25 118.6 116 55.2
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 3.5e-25 118.6 116 56.0
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.6e-25 118.2 116 54.3
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 6.0e-25 117.9 121 52.9
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 6.0e-25 117.9 121 51.2
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 6.0e-25 117.9 121 51.2
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 6.0e-25 117.9 131 50.4
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 7.9e-25 117.5 121 52.9
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 7.9e-25 117.5 131 51.1
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 7.9e-25 117.5 128 49.2
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.0e-24 117.1 131 50.4
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 1.3e-24 116.7 124 53.2
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.8e-24 116.3 131 49.6
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.8e-24 116.3 121 55.4
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.8e-24 116.3 116 55.2
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.8e-24 116.3 116 53.4
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.8e-24 116.3 116 55.2
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 1.8e-24 116.3 116 53.4
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 2.3e-24 115.9 121 52.1
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.0e-24 115.5 116 53.4
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.9e-24 115.2 116 51.7
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 3.9e-24 115.2 121 52.9
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 3.9e-24 115.2 131 48.1
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 5.1e-24 114.8 121 51.2
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 6.7e-24 114.4 121 51.2
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 8.7e-24 114.0 121 51.2
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.1e-23 113.6 124 51.6
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 1.1e-23 113.6 121 50.4
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 1.5e-23 113.2 116 53.4
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.5e-23 113.2 117 52.1
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.5e-23 113.2 127 49.6
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 1.9e-23 112.8 96 60.4
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 1.9e-23 112.8 121 52.1
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.9e-23 112.8 102 58.8
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.5e-23 112.5 116 54.3
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 2.5e-23 112.5 121 49.6
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.3e-23 112.1 121 50.4
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 3.3e-23 112.1 121 52.9
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 3.3e-23 112.1 121 50.4
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 3.3e-23 112.1 116 54.3
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 4.3e-23 111.7 102 57.8
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.3e-23 111.7 116 53.4
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 4.3e-23 111.7 116 51.7
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 5.6e-23 111.3 102 56.9
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 9.6e-23 110.5 127 48.8
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 9.6e-23 110.5 122 50.8
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 9.6e-23 110.5 117 51.3
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.3e-22 110.2 96 59.4
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 1.3e-22 110.2 96 59.4
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.3e-22 110.2 102 56.9
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 1.3e-22 110.2 96 59.4
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 1.3e-22 110.2 102 56.9
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 1.3e-22 110.2 102 56.9
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 1.3e-22 110.2 96 59.4
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.3e-22 110.2 102 56.9
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.3e-22 110.2 96 59.4
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 1.3e-22 110.2 102 56.9
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 1.3e-22 110.2 131 48.1
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 1.3e-22 110.2 128 48.4
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 1.3e-22 110.2 121 48.8
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.6e-22 109.8 102 55.9
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 1.6e-22 109.8 102 55.9
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 1.6e-22 109.8 127 48.8
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 1.6e-22 109.8 117 52.1
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.6e-22 109.8 91 61.5
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 2.8e-22 109.0 127 47.2
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 2.8e-22 109.0 117 52.1
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 2.8e-22 109.0 117 52.1
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 2.8e-22 109.0 127 47.2
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 2.8e-22 109.0 117 50.4
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 3.7e-22 108.6 121 49.6
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 3.7e-22 108.6 128 46.9
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 4.8e-22 108.2 102 56.9
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 4.8e-22 108.2 102 56.9
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.8e-22 108.2 121 49.6
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.8e-22 108.2 122 50.0
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 4.8e-22 108.2 121 48.8
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 4.8e-22 108.2 91 62.6
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 4.8e-22 108.2 110 54.5
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 4.8e-22 108.2 124 49.2
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 6.2e-22 107.8 102 54.9
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 6.2e-22 107.8 134 47.8
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 6.2e-22 107.8 105 54.3
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 6.2e-22 107.8 121 48.8
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 8.1e-22 107.5 110 54.5
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.1e-21 107.1 103 55.3
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 1.1e-21 107.1 96 59.4
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.1e-21 107.1 104 56.7
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.4e-21 106.7 114 56.1
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 1.4e-21 106.7 116 50.0
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.8e-21 106.3 102 55.9
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.8e-21 106.3 131 46.6
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 2.4e-21 105.9 115 50.4
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.4e-21 105.9 91 58.2
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 2.4e-21 105.9 105 52.4
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 4.0e-21 105.1 116 49.1
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 5.3e-21 104.8 127 45.7
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 9.0e-21 104.0 96 56.2
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.2e-20 103.6 121 49.6
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.0e-20 102.8 106 52.8
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 2.6e-20 102.4 124 48.4
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 7.6e-20 100.9 104 51.9
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 7.6e-20 100.9 91 56.0
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.2e-19 99.4 132 45.5
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 2.2e-19 99.4 91 54.9
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 3.8e-19 98.6 96 55.2
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 1.1e-18 97.1 121 46.3
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 1.4e-18 96.7 121 46.3
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.2e-17 93.6 105 48.6
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 3.5e-17 92.0 92 54.3
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 1.1e-15 87.0 106 48.1
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 3.3e-15 85.5 91 48.4
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.1e-13 80.5 78 53.8
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 5.3e-13 78.2 102 43.1
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.3e-13 78.2 125 40.8
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 6.9e-13 77.8 91 46.2
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.0e-11 73.9 84 52.4
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 2.5e-10 69.3 68 47.1
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.2e-09 67.0 43 67.4
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.1e-07 60.5 91 40.7
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 3.3e-07 58.9 103 37.9
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.8e-06 55.8 90 38.9


User provided reference genes

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