Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 2551.9 1275 100.0
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1780.8 1291 71.6
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1732.6 1288 69.3
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1716.0 1288 68.4
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1597.4 1272 64.8
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1580.8 1274 63.5
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1563.1 1288 61.6
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1551.2 1283 62.4
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1548.1 1284 62.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1542.3 1298 61.7
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1537.3 1271 61.6
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1523.8 1294 60.7
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1521.5 1273 61.0
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1506.9 1281 60.0
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1505.7 1281 60.0
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1505.0 1295 60.2
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1496.9 1281 59.4
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1492.6 1285 60.2
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1492.2 1341 58.3
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1484.2 1269 59.1
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1483.8 1281 58.5
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1480.3 1278 59.2
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1479.5 1281 59.7
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1478.4 1258 59.5
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1472.2 1318 58.5
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1471.8 1287 58.7
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1470.3 1284 59.2
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1466.1 1288 58.3
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1462.6 1278 58.8
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1462.2 1273 59.0
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1461.8 1242 60.3
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1461.0 1285 58.6
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1459.9 1278 58.7
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1459.1 1272 58.7
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1458.0 1279 58.6
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1456.0 1285 58.7
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1453.0 1285 58.4
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1453.0 1279 58.6
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1448.3 1285 58.3
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1446.0 1272 58.6
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1444.9 1272 58.7
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1444.9 1289 57.5
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1443.7 1291 58.2
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1435.2 1270 57.9
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1433.7 1272 58.1
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1433.3 1271 57.8
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1423.7 1283 57.4
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1422.9 1328 55.2
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1422.5 1269 57.6
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1422.5 1254 57.9
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1421.0 1313 55.4
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1419.8 1283 57.5
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1416.7 1283 57.1
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1416.4 1280 57.0
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1414.8 1269 57.7
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1414.4 1270 56.5
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1411.4 1283 56.2
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1410.6 1282 56.4
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1410.6 1283 56.7
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1405.2 1271 57.0
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1403.3 1299 55.7
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1402.1 1273 56.2
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1399.8 1284 56.2
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1390.2 1287 56.3
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1377.8 1380 53.2
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1377.5 1282 55.4
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1377.1 1284 55.9
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1375.1 1286 55.0
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1374.4 1282 55.5
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1372.8 1326 54.4
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1368.2 1280 55.8
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1361.7 1279 55.1
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1361.3 1286 54.9
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1357.4 1291 55.5
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1355.9 1284 54.6
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1355.5 1281 54.6
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1354.7 1281 54.6
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1352.4 1284 54.5
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1349.7 1284 55.1
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1347.8 1283 54.7
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1345.5 1269 54.7
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1339.3 1274 54.9
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1333.5 1284 54.4
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1326.2 1271 54.5
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1325.1 1295 53.9
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1322.4 992 65.9
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1322.0 1281 54.0
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1313.9 1327 52.1
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1308.5 1222 55.6
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1303.9 1279 56.0
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1293.1 1282 53.1
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1280.0 1093 60.7
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1274.6 1271 53.4
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1263.8 1108 59.6
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1255.4 1297 53.2
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1246.5 1271 51.1
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1238.8 1283 51.0
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1220.3 1076 59.3
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1202.2 1281 49.9
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1095.1 1293 46.6
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 1.2e-308 1063.5 948 57.7
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 8.9e-307 1057.4 1282 47.3
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 1.9e-301 1039.6 1268 46.0
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 4.3e-301 1038.5 1256 47.6
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.6e-298 1029.2 1246 43.7
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.9e-269 933.3 874 55.6
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.8e-268 929.5 896 54.9
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 5.7e-261 905.2 735 62.4
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.5e-242 844.0 730 57.4
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 2.9e-233 813.1 852 52.3
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 2.0e-229 800.4 1168 39.6
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 5.4e-219 765.8 1150 38.3
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 7.0e-219 765.4 564 71.3
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 7.5e-213 745.3 772 53.4
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 2.5e-200 703.7 1248 37.5
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 2.3e-198 697.2 651 55.6
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 6.9e-174 615.9 630 55.4
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 5.4e-163 579.7 556 56.7
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 1.2e-141 508.8 411 59.6
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.7e-127 461.8 406 56.7
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 1.5e-120 438.7 602 43.4
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 4.1e-118 430.6 731 35.7
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 5.8e-80 303.9 380 45.3
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.0e-68 266.5 280 51.1
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 2.1e-66 258.8 175 72.0
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 3.8e-63 248.1 340 43.8
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 9.3e-62 243.4 305 44.6
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 5.8e-56 224.2 202 56.9
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 3.5e-53 214.9 309 41.1
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 1.4e-41 176.4 140 60.0
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 6.9e-41 174.1 229 42.4
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 7.9e-29 134.0 167 44.3
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 2.4e-25 122.5 149 49.7
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 5.3e-17 94.7 75 58.7
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 4.7e-13 81.6 62 62.9
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 3.7e-10 72.0 66 53.0
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 5.3e-09 68.2 51 62.7
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 4.5e-08 65.1 107 36.4
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 7.7e-08 64.3 55 54.5
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 6.5e-07 61.2 49 55.1
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 1.1e-06 60.5 49 67.3
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 5.5e-06 58.2 57 49.1


User provided reference genes

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