Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold6G03260 Striga asiatica HOM05D000390 ORTHO05D001192 2.0e-135 485.7 237 100.0
SGA_v2.0_scaffold202G41495 Striga asiatica HOM05D000390 ORTHO05D001192 1.6e-100 369.8 290 67.9
SGA_v2.0_scaffold49G18139 Striga asiatica HOM05D000390 ORTHO05D001192 3.6e-36 156.0 266 41.7
MSTRG.23610 Avicennia marina HOM05D000390 ORTHO05D001192 9.3e-16 88.2 200 34.0
MSTRG.3531 Avicennia marina HOM05D000390 ORTHO05D001192 7.3e-13 78.6 195 30.8
CSS0029078 Camellia sinensis var. sinensis HOM05D000390 ORTHO05D001192 8.1e-12 75.1 199 29.6
Oeu000896.1 Olea europaea HOM05D000390 ORTHO05D001192 2.4e-11 73.6 127 34.6
CSS0004503 Camellia sinensis var. sinensis HOM05D000390 ORTHO05D001192 5.3e-11 72.4 195 28.2
Hma1.2p1_0283F.1_g113590 Hydrangea macrophylla HOM05D000390 ORTHO05D001192 3.4e-10 69.7 196 29.1
Lalb_Chr12g0208721 Lupinus albus HOM05D000390 ORTHO05D001192 3.4e-10 69.7 110 38.2
SGA_v2.0_scaffold147G36325 Striga asiatica HOM05D000390 ORTHO05D001192 3.4e-10 69.7 127 33.1
PSO478G2442 Papaver somniferum HOM05D000390 ORTHO05D001192 5.8e-10 68.9 177 28.8
CAN.G11.17 Capsicum annuum HOM05D000390 ORTHO05D001192 7.6e-10 68.6 199 26.1
Carub.0007s3314 Capsella rubella HOM05D000390 ORTHO05D001192 9.9e-10 68.2 198 26.8
BcaC02g09616 Brassica carinata HOM05D000390 ORTHO05D001192 1.3e-09 67.8 195 26.7
BolC4t26051H Brassica oleracea HOM05D000390 ORTHO05D001192 1.3e-09 67.8 195 26.7
PGR042G2064 Punica granatum HOM05D000390 ORTHO05D001192 1.7e-09 67.4 125 34.4
Thhalv10018806m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 2.2e-09 67.0 67 44.8
PSO017G0644 Papaver somniferum HOM05D000390 ORTHO05D001192 2.9e-09 66.6 178 28.7
Phvul.002G201000 Phaseolus vulgaris HOM05D000390 ORTHO05D001192 2.9e-09 66.6 192 26.6
Carub.0002s1267 Capsella rubella HOM05D000390 ORTHO05D001192 3.8e-09 66.2 67 44.8
Haze_14210 Corylus avellana HOM05D000390 ORTHO05D001192 3.8e-09 66.2 128 33.6
Peaxi162Scf00104g01920 Petunia axillaris HOM05D000390 ORTHO05D001192 3.8e-09 66.2 127 29.9
BraA07t30974Z Brassica rapa HOM05D000390 ORTHO05D001192 4.9e-09 65.9 81 40.7
Carub.0002s1268 Capsella rubella HOM05D000390 ORTHO05D001192 4.9e-09 65.9 75 41.3
vmacro05497 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 4.9e-09 65.9 195 28.7
C04p44770 Brassica napus HOM05D000390 ORTHO05D001192 8.4e-09 65.1 195 26.7
A05p14370 Brassica napus HOM05D000390 ORTHO05D001192 1.4e-08 64.3 77 40.3
Carub.0002s1266 Capsella rubella HOM05D000390 ORTHO05D001192 1.4e-08 64.3 194 28.4
AL7G53110 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 1.9e-08 63.9 140 29.3
BolC6t39417H Brassica oleracea HOM05D000390 ORTHO05D001192 1.9e-08 63.9 67 43.3
BraA05t20365Z Brassica rapa HOM05D000390 ORTHO05D001192 1.9e-08 63.9 62 45.2
MELO3C022842.2 Cucumis melo HOM05D000390 ORTHO05D001192 1.9e-08 63.9 88 36.4
A07p33480 Brassica napus HOM05D000390 ORTHO05D001192 2.4e-08 63.5 81 39.5
C06p39870 Brassica napus HOM05D000390 ORTHO05D001192 2.4e-08 63.5 98 36.7
VMungo0251G2516 Vigna mungo HOM05D000390 ORTHO05D001192 2.4e-08 63.5 192 26.0
FvH4_2g04471 Fragaria vesca HOM05D000390 ORTHO05D001192 3.2e-08 63.2 75 41.3
FAN24G0796 Fragaria x ananassa HOM05D000390 ORTHO05D001192 3.2e-08 63.2 75 41.3
PGSC0003DMG401016693 Solanum tuberosum HOM05D000390 ORTHO05D001192 3.2e-08 63.2 199 25.1
SGA_v2.0_scaffold147G36320 Striga asiatica HOM05D000390 ORTHO05D001192 3.2e-08 63.2 127 29.9
Thhalv10028216m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 4.2e-08 62.8 183 25.1
Manes.02G074100 Manihot esculenta HOM05D000390 ORTHO05D001192 4.2e-08 62.8 73 41.1
Solyc03g034450.4 Solanum lycopersicum HOM05D000390 ORTHO05D001192 4.2e-08 62.8 127 29.9
BcaB03g15261 Brassica carinata HOM05D000390 ORTHO05D001192 5.4e-08 62.4 135 30.4
Carub.0002s1264 Capsella rubella HOM05D000390 ORTHO05D001192 5.4e-08 62.4 67 40.3
Duzib138G1453 Durio zibethinus HOM05D000390 ORTHO05D001192 5.4e-08 62.4 160 29.4
AL2G24580 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 7.1e-08 62.0 67 41.8
AL7G53030 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 7.1e-08 62.0 198 26.3
Cc07_g08260 Coffea canephora HOM05D000390 ORTHO05D001192 7.1e-08 62.0 203 26.1
Eucgr.J01542 Eucalyptus grandis HOM05D000390 ORTHO05D001192 7.1e-08 62.0 83 38.6
Sopen03g007330 Solanum pennellii HOM05D000390 ORTHO05D001192 7.1e-08 62.0 127 29.1
BcaC08g46410 Brassica carinata HOM05D000390 ORTHO05D001192 9.3e-08 61.6 62 43.5
C06p43410 Brassica napus HOM05D000390 ORTHO05D001192 9.3e-08 61.6 62 43.5
Sabra17G0123800 Salix brachista HOM05D000390 ORTHO05D001192 9.3e-08 61.6 137 29.9
Sp7g04030 Schrenkiella parvula HOM05D000390 ORTHO05D001192 9.3e-08 61.6 179 25.1
AL7G46860 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 1.2e-07 61.2 197 25.9
BcaB03g14735 Brassica carinata HOM05D000390 ORTHO05D001192 1.2e-07 61.2 62 43.5
A07p36020 Brassica napus HOM05D000390 ORTHO05D001192 1.2e-07 61.2 62 43.5
BraA07t31182Z Brassica rapa HOM05D000390 ORTHO05D001192 1.2e-07 61.2 62 43.5
Lj4g0018276 Lotus japonicus HOM05D000390 ORTHO05D001192 1.2e-07 61.2 193 27.5
Potri.017G148100 Populus trichocarpa HOM05D000390 ORTHO05D001192 1.2e-07 61.2 138 31.2
vmacro05500 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 1.2e-07 61.2 195 25.1
Carub.0002s1270 Capsella rubella HOM05D000390 ORTHO05D001192 1.6e-07 60.8 67 40.3
CARHR058600 Cardamine hirsuta HOM05D000390 ORTHO05D001192 1.6e-07 60.8 67 38.8
Dinv19002 Davidia involucrata HOM05D000390 ORTHO05D001192 1.6e-07 60.8 196 28.1
AL2G24590 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 2.1e-07 60.5 65 41.5
Carub.0002s1265 Capsella rubella HOM05D000390 ORTHO05D001192 2.1e-07 60.5 67 40.3
arahy.Tifrunner.gnm1.ann1.R8LD9K Arachis hypogaea HOM05D000390 ORTHO05D001192 2.7e-07 60.1 67 40.3
Thhalv10018712m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 2.7e-07 60.1 142 27.5
TWI63G0760 Tripterygium wilfordii HOM05D000390 ORTHO05D001192 2.7e-07 60.1 68 35.3
arahy.Tifrunner.gnm1.ann1.V5N9VT Arachis hypogaea HOM05D000390 ORTHO05D001192 3.5e-07 59.7 192 24.0
Carub.0002s1282 Capsella rubella HOM05D000390 ORTHO05D001192 3.5e-07 59.7 64 39.1
arahy.Tifrunner.gnm1.ann1.Y6I14R Arachis hypogaea HOM05D000390 ORTHO05D001192 4.6e-07 59.3 67 40.3
COL.COLO4_27120 Corchorus olitorius HOM05D000390 ORTHO05D001192 4.6e-07 59.3 72 43.1
Lj6g0005782 Lotus japonicus HOM05D000390 ORTHO05D001192 4.6e-07 59.3 199 25.6
PGSC0003DMG401023705 Solanum tuberosum HOM05D000390 ORTHO05D000577 4.6e-07 59.3 67 44.8
PGSC0003DMG402023705 Solanum tuberosum HOM05D000390 ORTHO05D000577 4.6e-07 59.3 67 44.8
BcaC02g08878 Brassica carinata HOM05D000390 ORTHO05D001192 6.0e-07 58.9 201 24.9
Thecc.04G123400 Theobroma cacao HOM05D000390 ORTHO05D001192 6.0e-07 58.9 194 25.8
AL7G46870 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 7.9e-07 58.5 67 38.8
AT1G66630 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 7.9e-07 58.5 82 35.4
Carub.0002s1278 Capsella rubella HOM05D000390 ORTHO05D001192 7.9e-07 58.5 67 34.3
ClCG03G008740 Citrullus lanatus HOM05D000390 ORTHO05D001192 7.9e-07 58.5 72 38.9
Thhalv10028270m.g Eutrema salsugineum HOM05D000390 ORTHO05D001192 7.9e-07 58.5 60 43.3
Sabra17G0104100 Salix brachista HOM05D000390 ORTHO05D001192 7.9e-07 58.5 130 29.2
THA.LOC104825614 Tarenaya hassleriana HOM05D000390 ORTHO05D001192 7.9e-07 58.5 67 40.3
HPP92_025942 Vanilla planifolia HOM05D000390 ORTHO05D000577 7.9e-07 58.5 67 44.8
MSTRG.20906 Avicennia marina HOM05D000390 ORTHO05D000577 1.0e-06 58.2 67 44.8
BolC4t26543H Brassica oleracea HOM05D000390 ORTHO05D001192 1.0e-06 58.2 201 24.4
Carub.0007s3313 Capsella rubella HOM05D000390 ORTHO05D001192 1.0e-06 58.2 67 40.3
CAN.G575.16 Capsicum annuum HOM05D000390 ORTHO05D000577 1.0e-06 58.2 67 43.3
Psat7g094040 Pisum sativum HOM05D000390 ORTHO05D001192 1.0e-06 58.2 126 31.0
Sp5g24750 Schrenkiella parvula HOM05D000390 ORTHO05D001192 1.0e-06 58.2 80 37.5
Solyc10g080570.2 Solanum lycopersicum HOM05D000390 ORTHO05D000577 1.0e-06 58.2 67 43.3
Sopen10g031110 Solanum pennellii HOM05D000390 ORTHO05D000577 1.0e-06 58.2 67 43.3
AL2G24600 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 1.3e-06 57.8 82 36.6
AL7G53060 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 1.3e-06 57.8 181 25.4
MSTRG.52 Avicennia marina HOM05D000390 ORTHO05D000577 1.3e-06 57.8 67 49.3
FAN27G0122 Fragaria x ananassa HOM05D000390 ORTHO05D001192 1.3e-06 57.8 72 38.9
Nitab4.5_0001079g0020 Nicotiana tabacum HOM05D000390 ORTHO05D000577 1.3e-06 57.8 67 43.3
Nitab4.5_0001440g0060 Nicotiana tabacum HOM05D000390 ORTHO05D000577 1.3e-06 57.8 67 43.3
Oeu041054.1 Olea europaea HOM05D000390 ORTHO05D000577 1.3e-06 57.8 67 44.8
AT5G37870 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 1.7e-06 57.4 72 37.5
C04p49560 Brassica napus HOM05D000390 ORTHO05D001192 1.7e-06 57.4 201 24.4
FAN20G1844 Fragaria x ananassa HOM05D000390 ORTHO05D001192 1.7e-06 57.4 67 40.3
Oeu057581.1 Olea europaea HOM05D000390 ORTHO05D000577 1.7e-06 57.4 67 46.3
TPR.G4696 Trifolium pratense HOM05D000390 ORTHO05D000577 1.7e-06 57.4 67 44.8
Actinidia17652 Actinidia chinensis HOM05D000390 ORTHO05D001192 2.3e-06 57.0 180 25.0
BcaC08g46408 Brassica carinata HOM05D000390 ORTHO05D001192 2.3e-06 57.0 118 29.7
CANSAT78G1481 Cannabis sativa HOM05D000390 ORTHO05D001192 2.3e-06 57.0 67 40.3
CAN.G128.51 Capsicum annuum HOM05D000390 ORTHO05D000577 2.3e-06 57.0 67 43.3
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.3e-06 57.0 67 46.3
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.3e-06 57.0 67 46.3
Ciclev10012174m.g Citrus clementina HOM05D000390 ORTHO05D001192 2.3e-06 57.0 67 43.3
ECA248G1954 Erigeron canadensis HOM05D000390 ORTHO05D000633 2.3e-06 57.0 67 44.8
Gohir.D11G167700 Gossypium hirsutum HOM05D000390 ORTHO05D001192 2.3e-06 57.0 160 30.0
Gorai.007G178800 Gossypium raimondii HOM05D000390 ORTHO05D001192 2.3e-06 57.0 160 30.0
Sopen05g029020 Solanum pennellii HOM05D000390 ORTHO05D000577 2.3e-06 57.0 67 44.8
SGA_v2.0_scaffold12G06151 Striga asiatica HOM05D030378 ORTHO05D399993 2.3e-06 57.0 66 36.4
THA.LOC104825878 Tarenaya hassleriana HOM05D000390 ORTHO05D000577 2.3e-06 57.0 67 46.3
AL7G46850 Arabidopsis lyrata HOM05D000390 ORTHO05D001192 3.0e-06 56.6 67 38.8
AT1G66620 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 3.0e-06 56.6 67 38.8
Carub.0002s1280 Capsella rubella HOM05D000390 ORTHO05D001192 3.0e-06 56.6 67 40.3
FvH4_2g04470 Fragaria vesca HOM05D000390 ORTHO05D001192 3.0e-06 56.6 67 37.3
RcHm_v2.0_Chr2g0111691 Rosa chinensis HOM05D000390 ORTHO05D001192 3.0e-06 56.6 161 29.8
TWI63G0436 Tripterygium wilfordii HOM05D000390 ORTHO05D001192 3.0e-06 56.6 68 33.8
Aa31LG1G18280 Aethionema arabicum HOM05D000390 ORTHO05D001192 3.9e-06 56.2 67 40.3
BcaB06g27154 Brassica carinata HOM05D000390 ORTHO05D001192 3.9e-06 56.2 62 41.9
BraA03t11044Z Brassica rapa HOM05D000390 ORTHO05D001192 3.9e-06 56.2 58 39.7
Carub.0002s1283 Capsella rubella HOM05D000390 ORTHO05D001192 3.9e-06 56.2 71 38.0
HanXRQChr04g0120551 Helianthus annuus HOM05D000390 ORTHO05D000577 3.9e-06 56.2 67 44.8
Hma1.2p1_0972F.1_g242890 Hydrangea macrophylla HOM05D000390 ORTHO05D000577 3.9e-06 56.2 67 43.3
MBI06_g46581_MAGBIO Magnolia biondii HOM05D000390 ORTHO05D000577 3.9e-06 56.2 67 44.8
PGSC0003DMG400004288 Solanum tuberosum HOM05D000390 ORTHO05D000577 3.9e-06 56.2 67 41.8
SGA_v2.0_scaffold329G48863 Striga asiatica HOM05D000390 ORTHO05D001192 3.9e-06 56.2 126 29.4
SGA_v2.0_scaffold55G19769 Striga asiatica HOM05D000390 ORTHO05D000577 3.9e-06 56.2 67 44.8
CARHR214860 Cardamine hirsuta HOM05D000390 ORTHO05D001192 5.1e-06 55.8 67 37.3
HanXRQChr06g0170721 Helianthus annuus HOM05D000390 ORTHO05D000577 5.1e-06 55.8 67 46.3
HanXRQChr13g0390061 Helianthus annuus HOM05D000390 ORTHO05D000577 5.1e-06 55.8 67 43.3
Lsat_1_v5_gn_4_33741 Lactuca sativa HOM05D000390 ORTHO05D000577 5.1e-06 55.8 67 46.3
Lsat_1_v5_gn_5_165420 Lactuca sativa HOM05D000390 ORTHO05D000577 5.1e-06 55.8 67 43.3
Lj3g0014089 Lotus japonicus HOM05D000390 ORTHO05D000577 5.1e-06 55.8 67 44.8
SMO134G0108 Selaginella moellendorffii HOM05D000390 ORTHO05D000577 5.1e-06 55.8 67 43.3
Sc23g0002080 Simmondsia chinensis HOM05D000390 ORTHO05D000577 5.1e-06 55.8 67 44.8
THA.LOC104801370 Tarenaya hassleriana HOM05D000390 ORTHO05D000577 5.1e-06 55.8 67 44.8
vmacro22635 Vaccinium macrocarpon HOM05D000390 ORTHO05D000577 5.1e-06 55.8 67 44.8
Zm00001eb237020 Zea mays HOM05D000390 ORTHO05D000577 5.1e-06 55.8 67 46.3
A04p15330 Brassica napus HOM05D000390 ORTHO05D001192 6.6e-06 55.5 68 38.2
BraA04t17174Z Brassica rapa HOM05D000390 ORTHO05D001192 6.6e-06 55.5 68 38.2
Carub.0005s1234 Capsella rubella HOM05D000390 ORTHO05D001192 6.6e-06 55.5 85 35.3
Glyma.03G257700 Glycine max HOM05D000390 ORTHO05D000577 6.6e-06 55.5 67 43.3
Glyma.19G256200 Glycine max HOM05D000390 ORTHO05D000577 6.6e-06 55.5 67 43.3
Peaxi162Scf00249g01220 Petunia axillaris HOM05D000390 ORTHO05D000577 6.6e-06 55.5 67 41.8
Phvul.006G113500 Phaseolus vulgaris HOM05D000390 ORTHO05D000577 6.6e-06 55.5 67 43.3
Rhsim03G0208800 Rhododendron simsii HOM05D000390 ORTHO05D000577 6.6e-06 55.5 67 44.8
Hund16717 Selenicereus undatus HOM05D000390 ORTHO05D000577 6.6e-06 55.5 67 43.3
VMungo0540G0380 Vigna mungo HOM05D000390 ORTHO05D000577 6.6e-06 55.5 67 43.3
AT5G37910 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 8.7e-06 55.1 67 38.8
A04p11090 Brassica napus HOM05D000390 ORTHO05D001192 8.7e-06 55.1 144 28.5
HanXRQChr01g0009381 Helianthus annuus HOM05D000390 ORTHO05D000577 8.7e-06 55.1 67 43.3
Lsat_1_v5_gn_4_155121 Lactuca sativa HOM05D000390 ORTHO05D001192 8.7e-06 55.1 81 40.7
Lj3C904G8 Lonicera japonica HOM05D000390 ORTHO05D000577 8.7e-06 55.1 67 44.8
Medtr7g117415 Medicago truncatula HOM05D000390 ORTHO05D000577 8.7e-06 55.1 67 44.8
Nitab4.5_0003555g0030 Nicotiana tabacum HOM05D000390 ORTHO05D000577 8.7e-06 55.1 67 41.8
Peaxi162Scf00441g00057 Petunia axillaris HOM05D000390 ORTHO05D000577 8.7e-06 55.1 67 41.8
Potri.016G059700 Populus trichocarpa HOM05D000390 ORTHO05D000577 8.7e-06 55.1 67 44.8
QL07p024428 Quercus lobata HOM05D000390 ORTHO05D000577 8.7e-06 55.1 67 43.3
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 8.7e-06 55.1 69 39.1
unitig_52.g16859 Utricularia gibba HOM05D000390 ORTHO05D000577 8.7e-06 55.1 67 44.8


User provided reference genes

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