Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 6.1e-58 227.3 114 100.0
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 3.4e-56 221.5 114 97.4
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 6.0e-21 104.4 85 71.8
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 3.3e-19 98.6 79 65.8
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 4.3e-19 98.2 60 80.0
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 5.6e-19 97.8 83 57.8
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 5.6e-19 97.8 58 81.0
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 9.6e-19 97.1 58 81.0
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 9.6e-19 97.1 79 63.3
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.3e-18 96.7 81 65.4
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.3e-18 96.7 58 81.0
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.6e-18 96.3 58 81.0
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.6e-18 96.3 52 88.5
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.6e-18 96.3 52 88.5
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 2.1e-18 95.9 63 76.2
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 2.1e-18 95.9 63 76.2
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.1e-18 95.9 58 82.8
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 2.1e-18 95.9 58 79.3
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 2.1e-18 95.9 58 81.0
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 2.1e-18 95.9 53 86.8
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 2.8e-18 95.5 59 76.3
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 2.8e-18 95.5 80 63.8
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 2.8e-18 95.5 58 81.0
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 2.8e-18 95.5 58 79.3
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.8e-18 95.5 58 81.0
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.8e-18 95.5 52 88.5
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.8e-18 95.5 58 81.0
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 2.8e-18 95.5 52 88.5
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 2.8e-18 95.5 58 79.3
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.8e-18 95.5 58 79.3
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 3.6e-18 95.1 75 69.3
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 3.6e-18 95.1 75 69.3
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 3.6e-18 95.1 53 84.9
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 3.6e-18 95.1 85 57.6
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.6e-18 95.1 58 81.0
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.6e-18 95.1 58 81.0
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 3.6e-18 95.1 56 82.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 3.6e-18 95.1 58 81.0
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 4.8e-18 94.7 58 79.3
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 4.8e-18 94.7 79 62.0
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 4.8e-18 94.7 84 60.7
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 4.8e-18 94.7 74 70.3
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 4.8e-18 94.7 74 70.3
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 4.8e-18 94.7 95 54.7
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 6.2e-18 94.4 58 77.6
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 6.2e-18 94.4 58 81.0
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 6.2e-18 94.4 58 81.0
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 6.2e-18 94.4 58 79.3
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 6.2e-18 94.4 59 76.3
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 6.2e-18 94.4 53 83.0
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 6.2e-18 94.4 58 77.6
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 6.2e-18 94.4 58 77.6
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 6.2e-18 94.4 59 78.0
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 6.2e-18 94.4 67 73.1
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 6.2e-18 94.4 66 75.8
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 6.2e-18 94.4 64 76.6
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 6.2e-18 94.4 74 68.9
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 6.2e-18 94.4 82 61.0
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 8.1e-18 94.0 53 84.9
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 8.1e-18 94.0 59 76.3
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 8.1e-18 94.0 53 86.8
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 8.1e-18 94.0 69 69.6
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-17 93.6 67 71.6
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.1e-17 93.6 85 61.2
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.1e-17 93.6 85 61.2
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.1e-17 93.6 66 72.7
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.1e-17 93.6 58 79.3
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.1e-17 93.6 66 74.2
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.4e-17 93.2 58 81.0
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.4e-17 93.2 53 83.0
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.4e-17 93.2 53 81.1
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.4e-17 93.2 69 69.6
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-17 92.8 52 86.5
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-17 92.8 63 74.6
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.8e-17 92.8 63 74.6
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.8e-17 92.8 63 74.6
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 1.8e-17 92.8 63 74.6
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 1.8e-17 92.8 63 74.6
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.8e-17 92.8 58 75.9
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.8e-17 92.8 58 75.9
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.8e-17 92.8 53 81.1
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 1.8e-17 92.8 58 74.1
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.8e-17 92.8 77 61.0
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 2.4e-17 92.4 63 76.2
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.4e-17 92.4 58 75.9
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.4e-17 92.4 85 62.4
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 2.4e-17 92.4 53 81.1
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 2.4e-17 92.4 53 83.0
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 3.1e-17 92.0 63 76.2
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.1e-17 92.0 59 72.9
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 3.1e-17 92.0 58 79.3
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 3.1e-17 92.0 95 58.9
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 3.1e-17 92.0 67 71.6
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 3.1e-17 92.0 53 84.9
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 3.1e-17 92.0 54 79.6
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 3.1e-17 92.0 93 58.1
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 4.0e-17 91.7 58 75.9
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.0e-17 91.7 53 83.0
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 4.0e-17 91.7 63 69.8
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 4.0e-17 91.7 53 81.1
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 5.3e-17 91.3 52 84.6
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 5.3e-17 91.3 53 79.2
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 5.3e-17 91.3 59 76.3
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.3e-17 91.3 59 76.3
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.3e-17 91.3 59 76.3
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.3e-17 91.3 59 76.3
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.3e-17 91.3 59 76.3
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 5.3e-17 91.3 58 75.9
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 6.9e-17 90.9 53 81.1
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 6.9e-17 90.9 52 82.7
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 6.9e-17 90.9 70 64.3
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 9.0e-17 90.5 53 79.2
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 9.0e-17 90.5 80 62.5
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 9.0e-17 90.5 53 77.4
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 1.2e-16 90.1 53 81.1
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 1.5e-16 89.7 52 84.6
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.5e-16 89.7 53 77.4
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 2.0e-16 89.4 53 83.0
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 2.0e-16 89.4 53 79.2
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 2.0e-16 89.4 59 72.9
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 4.5e-16 88.2 52 78.8
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 4.5e-16 88.2 111 51.4
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 4.5e-16 88.2 57 75.4
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 4.5e-16 88.2 57 75.4
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 4.5e-16 88.2 53 75.5
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 5.8e-16 87.8 85 56.5
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 7.6e-16 87.4 85 58.8
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 7.6e-16 87.4 58 72.4
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 7.6e-16 87.4 56 75.0
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 7.6e-16 87.4 54 77.8
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 9.9e-16 87.0 53 77.4
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 4.9e-15 84.7 53 73.6
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 4.9e-15 84.7 52 78.8
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 6.4e-15 84.3 95 51.6
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.1e-14 83.6 57 66.7
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-14 83.2 52 75.0
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-14 83.2 52 75.0
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.4e-14 83.2 52 75.0
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.4e-14 83.2 57 71.9
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.4e-14 83.2 53 77.4
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.9e-14 82.8 52 73.1
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.9e-14 82.8 52 73.1
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.9e-14 82.8 52 73.1
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 1.9e-14 82.8 52 73.1
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.4e-14 82.4 52 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 3.2e-14 82.0 53 73.6
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 3.2e-14 82.0 52 73.1
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 4.2e-14 81.6 85 52.9
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 5.4e-14 81.3 52 73.1
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 5.4e-14 81.3 57 66.7
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.1e-13 79.3 58 62.1
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 4.6e-13 78.2 62 58.1
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.8e-12 76.3 121 43.0
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.5e-11 72.4 52 57.7
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 3.3e-11 72.0 61 60.7
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 3.3e-11 72.0 61 57.4
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.3e-11 72.0 103 44.7
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 3.3e-11 72.0 52 63.5
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 4.3e-11 71.6 53 66.0
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 7.4e-11 70.9 101 43.6
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.6e-10 69.7 53 56.6
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 2.1e-10 69.3 66 51.5
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 2.1e-10 69.3 50 60.0
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.1e-09 67.0 52 51.9
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.4e-09 65.9 67 44.8
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.4e-09 65.9 50 62.0
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 5.8e-08 61.2 43 67.4
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 3.8e-07 58.5 37 73.0
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.9e-07 58.2 55 58.2
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 6.4e-07 57.8 37 70.3
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 1.1e-06 57.0 37 70.3
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.4e-06 56.6 39 71.8
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 7.1e-06 54.3 37 67.6


User provided reference genes

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