Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 2452.2 1294 100.0
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1755.0 1305 72.8
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1733.0 1341 71.4
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1679.8 1342 68.9
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1589.3 1251 68.7
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1498.0 1350 62.7
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1488.8 1342 61.0
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1480.3 1339 61.9
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1475.7 1343 61.8
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1465.7 1350 61.6
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1465.3 1341 61.1
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1462.2 1329 62.2
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1457.6 1341 61.4
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1456.8 1342 60.9
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1438.3 1267 62.5
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1437.2 1344 60.9
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1417.1 1350 59.3
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1414.1 1335 60.3
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1410.6 1269 62.3
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1409.4 1252 62.8
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1407.5 1354 59.6
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1405.6 1338 59.6
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1403.7 1255 61.9
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1402.9 1342 59.7
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1390.9 1266 61.6
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1385.5 1348 58.6
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1384.4 1366 58.3
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1369.4 1296 59.6
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1369.4 1351 57.4
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1366.7 1309 59.7
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1365.1 1325 58.9
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1363.2 1331 58.4
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1362.1 1305 58.7
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1357.4 1291 59.8
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1357.4 1342 56.9
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1357.0 1291 59.3
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1346.3 1342 56.1
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1339.3 1262 58.6
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1338.2 1272 59.4
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1336.6 1300 57.6
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1325.5 1355 58.1
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1318.9 1255 57.8
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1317.0 1343 57.0
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1316.6 1258 58.2
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1316.2 1342 55.9
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1307.4 1259 57.3
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1303.9 1285 58.3
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1298.1 1333 54.7
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1297.3 1292 56.0
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1296.6 1377 54.7
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1291.9 1334 56.4
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1288.1 1259 56.9
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1286.9 1340 55.3
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1283.9 1331 56.3
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1283.9 1259 56.8
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1283.5 1246 57.5
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1279.2 1333 55.8
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1278.8 1335 56.3
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1278.1 1332 56.1
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1277.3 1353 54.8
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1276.2 1343 55.4
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1275.4 1268 58.8
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1274.6 1353 54.8
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1273.5 1339 55.3
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1273.5 1349 55.7
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1272.3 1333 55.8
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1271.9 1285 56.0
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1270.0 1355 55.2
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1269.2 1352 55.5
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1260.4 1301 55.4
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1255.0 1350 55.0
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1254.6 1247 56.5
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1252.3 1252 56.2
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1247.6 1346 52.9
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1239.9 1352 54.7
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1239.9 1235 55.9
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1218.4 1352 52.7
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1217.2 1301 54.0
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1216.8 1169 58.7
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1216.1 1104 58.9
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1215.3 1095 60.7
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1214.1 1347 51.8
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1202.2 1367 51.8
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1192.9 1384 51.4
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1190.6 1384 52.0
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1182.2 1332 53.4
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1159.4 1270 52.5
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1155.6 1080 59.9
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1150.6 1177 56.3
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1142.1 1188 55.8
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 0.0e+00 1137.9 1016 60.5
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1127.9 1218 53.0
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1119.8 1325 50.6
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1116.7 1074 58.8
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1110.1 1053 58.9
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1080.1 1301 48.3
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 7.7e-298 1027.7 1205 50.5
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 4.7e-295 1018.5 987 57.5
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 3.9e-294 1015.4 1258 49.7
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 6.3e-292 1008.1 1283 48.6
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 1.8e-286 989.9 1128 50.3
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.8e-281 972.2 1368 45.4
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 3.0e-278 962.6 1260 47.4
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 3.1e-267 926.0 960 54.5
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.4e-246 857.4 964 51.1
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.3e-240 835.9 784 58.5
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 1.3e-233 814.3 752 58.5
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 4.5e-221 772.7 1457 37.7
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 6.0e-218 762.3 1119 44.0
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.9e-217 759.6 705 58.4
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 1.9e-211 740.7 1137 42.2
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 3.8e-204 716.5 842 51.0
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 2.7e-202 710.3 1416 36.4
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 6.5e-196 689.1 965 46.2
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 5.7e-192 676.0 840 47.7
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 4.9e-151 540.0 649 50.4
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.3e-148 531.2 476 62.4
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 2.5e-147 527.7 1244 31.9
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 2.9e-143 514.2 1516 29.0
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.4e-134 484.6 430 63.0
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.3e-111 409.1 393 60.8
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 9.3e-110 402.9 344 65.1
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.9e-94 352.1 312 62.2
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 8.7e-84 316.6 335 52.5
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 1.4e-81 309.3 454 43.4
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 9.7e-75 286.6 347 51.0
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 1.7e-74 285.8 315 54.0
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 9.4e-62 243.4 923 26.2
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 2.7e-61 241.9 415 37.3
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 8.3e-50 203.8 248 51.6
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 2.5e-38 165.6 235 45.5
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 2.8e-37 162.2 155 54.8
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 2.3e-36 159.1 568 29.6
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 4.5e-32 144.8 106 67.9
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 2.9e-31 142.1 115 61.7
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 2.9e-31 142.1 82 82.9
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 4.3e-30 138.3 233 37.8
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.9e-26 125.6 130 57.7
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 4.6e-24 118.2 119 58.0
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.9e-22 112.8 87 63.2
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 2.1e-21 109.4 117 47.0
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.2e-10 72.8 75 46.7
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.2e-10 72.8 75 46.7
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 8.3e-10 70.9 67 53.7
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 2.7e-08 65.9 70 55.7
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 7.8e-08 64.3 149 28.2
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 1.0e-07 63.9 156 28.8
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 1.3e-07 63.5 159 27.0
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 6.6e-07 61.2 134 26.9
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 6.6e-07 61.2 176 26.1
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 8.6e-07 60.8 156 27.6
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 1.1e-06 60.5 135 27.4
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 1.1e-06 60.5 129 27.1
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 1.5e-06 60.1 156 26.3
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 1.5e-06 60.1 134 26.9
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 1.5e-06 60.1 134 26.9
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 1.5e-06 60.1 134 27.6
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.5e-06 60.1 134 27.6
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 2.5e-06 59.3 156 26.9
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 2.5e-06 59.3 134 27.6
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 3.3e-06 58.9 134 26.1
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 4.3e-06 58.5 134 26.1
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 4.3e-06 58.5 134 26.1
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 5.6e-06 58.2 156 26.9
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 5.6e-06 58.2 161 28.0
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 7.3e-06 57.8 239 23.8
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 9.5e-06 57.4 134 24.6
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 9.5e-06 57.4 159 25.8


User provided reference genes

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