Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1733.0 893 100.0
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1454.1 899 82.8
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1450.3 885 82.6
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1430.2 891 81.9
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1343.2 883 76.4
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1325.8 896 77.3
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1325.8 896 77.2
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1321.6 903 76.5
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1318.9 892 76.3
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1318.9 889 76.8
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1313.5 901 76.0
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1305.4 882 75.9
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1290.8 815 79.8
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1290.4 870 76.7
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1282.7 824 78.9
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1273.5 900 74.8
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1261.9 876 74.4
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1261.5 811 78.2
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1259.6 841 77.3
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1259.2 840 76.4
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1256.9 860 74.8
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1254.2 825 76.7
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1253.8 845 75.9
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1252.7 845 76.1
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1251.9 879 73.4
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1251.5 819 77.2
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1251.1 891 73.1
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1250.3 876 74.1
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1248.8 867 73.2
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1247.3 876 74.0
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1245.3 907 71.3
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1245.3 836 77.0
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1241.9 837 76.8
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1241.9 838 76.7
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1241.1 836 76.9
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1239.9 840 76.5
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1238.4 833 75.9
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1238.0 892 73.2
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1237.2 903 70.8
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1236.5 812 77.2
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1235.3 891 72.7
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1234.9 901 69.6
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1234.6 904 70.6
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1233.4 900 71.4
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1232.6 849 74.1
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1229.5 900 70.7
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1229.2 823 75.6
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1228.8 882 71.9
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1226.8 909 69.2
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1224.5 894 71.6
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1223.4 882 72.1
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1221.5 887 72.5
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1220.7 876 71.6
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1220.3 906 69.8
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1219.9 889 72.7
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1217.6 893 72.0
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1209.5 892 70.9
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1209.1 896 71.4
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1205.3 886 70.9
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1201.0 894 69.6
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1199.5 890 70.3
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1196.0 866 71.7
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1193.3 895 69.6
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1191.8 889 70.8
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1184.5 884 69.7
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1181.4 871 70.7
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1180.6 888 70.0
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1178.7 835 71.0
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1177.2 860 71.4
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1175.6 907 67.5
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1169.5 816 71.2
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1167.1 822 73.1
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1166.4 835 71.5
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1158.3 811 72.7
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1157.5 888 67.6
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1149.4 890 67.8
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1139.8 843 69.2
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1129.0 891 68.6
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1125.5 875 69.1
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1124.8 889 68.6
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1120.9 888 66.4
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1104.4 889 66.3
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1083.6 810 68.6
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1083.6 810 68.6
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 3.7e-275 951.8 863 60.6
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 5.4e-258 894.8 622 75.6
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.5e-255 886.7 552 81.3
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 1.5e-255 886.7 828 56.6
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 1.5e-239 833.6 553 76.3
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 1.1e-234 817.4 872 50.7
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 9.2e-234 814.3 611 69.6
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 6.0e-233 811.6 477 82.0
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 8.3e-227 791.2 821 52.4
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.1e-226 790.8 519 78.6
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.7e-208 730.3 501 76.2
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.4e-196 689.5 477 73.0
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 1.3e-190 671.0 861 45.1
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 4.2e-186 656.0 826 43.3
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 4.6e-185 652.5 565 65.0
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 8.5e-179 631.7 460 72.4
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 8.2e-166 588.6 411 74.5
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 2.2e-147 527.3 819 38.0
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 6.5e-147 525.8 358 77.7
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 8.7e-99 365.9 253 72.3
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.8e-97 360.9 201 85.1
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.1e-96 359.0 287 67.2
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 3.1e-96 357.5 209 83.3
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 2.3e-91 341.3 294 65.6
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.0e-91 340.9 231 74.9
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.6e-87 327.8 194 83.0
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 1.3e-86 325.5 241 73.0
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 2.9e-86 324.3 263 64.6
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 6.7e-83 313.2 200 76.5
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.9e-82 311.6 229 70.3
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.2e-55 222.6 178 65.2
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.2e-54 218.4 130 77.7
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.2e-49 201.8 163 65.6
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.7e-46 192.2 124 74.2
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 6.5e-46 190.3 112 79.5
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.2e-45 188.0 111 82.9
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 6.5e-38 163.7 209 46.9
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 3.0e-35 154.8 109 71.6
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 2.6e-34 151.8 98 78.6
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 5.4e-32 144.1 87 79.3
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.9e-25 120.9 169 41.4
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.2e-20 106.3 87 57.5
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 3.6e-20 104.8 69 71.0
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.0e-19 101.3 82 64.6
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.1e-16 93.2 59 81.4
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.0e-16 90.5 70 65.7
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 6.6e-14 84.0 53 75.5
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 8.6e-14 83.6 55 70.9
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.1e-13 83.2 72 56.9
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.1e-13 83.2 72 56.9
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 8.0e-12 77.0 60 63.3
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 1.0e-11 76.6 230 27.4
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.1e-11 75.1 71 62.0
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 9.2e-08 63.5 219 25.1
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 2.0e-07 62.4 49 67.3
Zm00001eb328630 Zea mays HOM05D000001 ORTHO05D000003 2.0e-07 62.4 194 26.3
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 4.6e-07 61.2 42 71.4
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 5.0e-06 57.8 122 39.3
Cc06_g06860 Coffea canephora HOM05D006596 ORTHO05D008497 5.0e-06 57.8 222 26.1


User provided reference genes

Program Settings