Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 6.7e-229 797.0 395 100.0
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 2.8e-134 482.6 280 85.7
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 7.2e-130 468.0 281 83.6
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 2.3e-128 463.0 278 81.7
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 1.3e-126 457.2 279 81.0
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 3.7e-126 455.7 279 80.3
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 3.1e-125 452.6 279 79.9
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.2e-124 450.7 279 79.9
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.5e-124 450.3 279 79.9
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.0e-123 447.6 280 78.9
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.7e-123 446.8 279 79.9
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 3.8e-123 445.7 278 79.5
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 5.0e-123 445.3 279 79.6
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 8.5e-123 444.5 277 79.4
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 1.9e-122 443.4 305 73.8
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.9e-122 443.4 279 79.6
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 2.5e-122 443.0 279 79.2
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 4.2e-122 442.2 272 80.1
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.6e-121 440.3 280 78.6
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 2.7e-121 439.5 279 77.4
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 2.7e-121 439.5 279 78.5
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 3.6e-121 439.1 272 78.7
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 6.1e-121 438.3 279 76.7
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 6.1e-121 438.3 279 78.9
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.8e-120 436.8 279 78.5
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.3e-120 436.4 278 77.7
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 3.0e-120 436.0 280 77.5
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 3.9e-120 435.6 271 77.9
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 3.9e-120 435.6 272 79.4
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 5.1e-120 435.3 279 78.5
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 8.8e-120 434.5 277 78.3
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 8.8e-120 434.5 278 77.0
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 1.1e-119 434.1 272 78.7
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.5e-119 433.7 290 75.9
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 2.6e-119 433.0 293 73.0
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 2.6e-119 433.0 272 78.7
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 4.4e-119 432.2 286 75.9
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.7e-118 430.3 304 71.7
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.7e-118 430.3 272 77.9
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 2.2e-118 429.9 281 75.8
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 2.8e-118 429.5 274 77.0
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 6.3e-118 428.3 272 77.6
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 1.1e-117 427.6 279 75.3
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 1.1e-117 427.6 273 77.7
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 1.1e-117 427.6 273 77.3
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 1.4e-117 427.2 279 74.6
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 4.1e-117 425.6 278 77.0
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 4.1e-117 425.6 280 74.3
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 4.1e-117 425.6 297 71.7
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 9.1e-117 424.5 279 75.6
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 1.2e-116 424.1 280 72.9
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 1.5e-116 423.7 279 74.2
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 2.0e-116 423.3 279 74.2
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 2.0e-116 423.3 279 73.5
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 2.6e-116 422.9 279 74.2
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 5.9e-116 421.8 281 74.4
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 7.7e-116 421.4 280 73.6
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 7.7e-116 421.4 272 75.7
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 7.7e-116 421.4 278 75.5
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 1.0e-115 421.0 240 85.8
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 1.3e-115 420.6 280 73.2
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 2.2e-115 419.9 250 82.0
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 2.9e-115 419.5 282 74.1
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 8.5e-115 417.9 271 74.9
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 1.1e-114 417.5 271 74.9
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 1.1e-114 417.5 271 74.9
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 1.1e-114 417.5 271 74.9
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 1.9e-114 416.8 270 72.2
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 1.9e-114 416.8 271 74.5
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 4.2e-114 415.6 271 74.9
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 5.5e-114 415.2 280 73.9
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 5.5e-114 415.2 270 74.8
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 7.2e-114 414.8 278 74.5
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 1.2e-113 414.1 278 71.2
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.2e-113 414.1 278 71.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.1e-113 413.3 273 73.6
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.7e-113 412.9 307 70.0
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 4.7e-113 412.1 270 73.7
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 1.0e-112 411.0 272 73.2
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 2.3e-112 409.8 278 71.6
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 3.0e-112 409.5 279 73.5
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 8.8e-112 407.9 278 73.7
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.5e-111 407.1 277 73.6
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 7.4e-111 404.8 273 72.5
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 1.4e-109 400.6 238 82.4
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.0e-108 396.7 272 75.0
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 4.5e-108 395.6 241 78.4
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 5.9e-108 395.2 295 66.8
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.0e-107 394.4 334 63.2
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 3.8e-107 392.5 272 69.1
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 9.4e-106 387.9 263 70.7
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 1.8e-104 383.6 248 79.0
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 5.7e-103 378.6 222 82.9
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 1.3e-99 367.5 250 74.0
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 8.8e-96 354.8 248 70.6
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.1e-93 347.8 227 74.9
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 2.4e-93 346.7 239 72.0
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 2.3e-88 330.1 240 65.8
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 2.0e-84 317.0 254 60.2
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 6.6e-83 312.0 246 61.0
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 4.7e-73 279.3 183 71.6
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.1e-68 263.8 384 43.2
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 5.1e-67 259.2 261 57.5
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 7.3e-66 255.4 232 56.9
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 4.2e-53 213.0 147 74.1
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.6e-52 211.1 244 51.6
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 6.0e-52 209.1 258 45.0
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 1.4e-48 198.0 117 74.4
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 2.4e-48 197.2 255 41.2
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 1.5e-47 194.5 193 56.5
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 5.8e-47 192.6 121 77.7
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 2.0e-39 167.5 225 47.1
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 9.3e-37 158.7 175 52.6
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 2.3e-35 154.1 274 37.2
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 5.3e-32 142.9 111 62.2
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.0e-27 128.6 74 82.4
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 4.3e-26 123.2 83 72.3
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 1.2e-20 105.1 52 92.3
SGA_v2.0_scaffold32G13273 Striga asiatica HOM05D005598 ORTHO05D006587 1.0e-19 102.1 62 80.6
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 5.7e-18 96.3 55 80.0
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 6.3e-17 92.8 185 35.7
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.8e-16 91.3 55 78.2
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 3.1e-16 90.5 53 79.2
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 2.0e-15 87.8 64 64.1
SGA_v2.0_scaffold58G20374 Striga asiatica HOM05D005598 ORTHO05D006587 3.8e-14 83.6 52 80.8
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 9.4e-13 79.0 109 42.2
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 2.7e-12 77.4 54 72.2
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 4.6e-12 76.6 163 31.3
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 1.8e-11 74.7 186 32.3
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 3.9e-11 73.6 59 59.3
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.5e-10 71.6 159 33.3
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 7.4e-10 69.3 159 31.4
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 1.7e-09 68.2 191 28.3
PRCOL_00000730 Prasinoderma coloniale HOM05D016613 ORTHO05D014817 2.2e-06 57.8 189 27.0
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 2.9e-06 57.4 37 81.1
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 3.8e-06 57.0 26 88.5
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 5.0e-06 56.6 82 45.1


User provided reference genes

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