Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20921 Striga asiatica HOM05D001900 ORTHO05D402831 1.3e-232 809.3 406 100.0
MSTRG.6253 Avicennia marina HOM05D001900 ORTHO05D003003 1.6e-31 141.4 83 77.1
SalBow6G4052 Salvia bowleyana HOM05D001900 ORTHO05D003003 2.3e-30 137.5 83 75.9
SalBow6G6368 Salvia bowleyana HOM05D001900 ORTHO05D003003 2.3e-30 137.5 83 75.9
SGA_v2.0_scaffold66G22376 Striga asiatica HOM05D001900 ORTHO05D003003 2.3e-30 137.5 83 77.1
Gohir.D11G241300 Gossypium hirsutum HOM05D001900 ORTHO05D003003 3.0e-30 137.1 84 75.0
Migut.J01540 Erythranthe guttata HOM05D001900 ORTHO05D003003 3.9e-30 136.7 83 75.9
HanXRQChr07g0196281 Helianthus annuus HOM05D001900 ORTHO05D003003 3.9e-30 136.7 83 75.9
COL.COLO4_28637 Corchorus olitorius HOM05D001900 ORTHO05D003003 5.1e-30 136.3 83 75.9
DCAR_013487 Daucus carota HOM05D001900 ORTHO05D003003 8.7e-30 135.6 83 73.5
Gohir.A11G229200 Gossypium hirsutum HOM05D001900 ORTHO05D003003 8.7e-30 135.6 84 73.8
Gorai.007G255400 Gossypium raimondii HOM05D001900 ORTHO05D003003 8.7e-30 135.6 84 73.8
Sc22g0003180 Simmondsia chinensis HOM05D001900 ORTHO05D003003 8.7e-30 135.6 83 75.9
Oeu052789.1 Olea europaea HOM05D001900 ORTHO05D003003 1.5e-29 134.8 83 75.9
Sopen01g014330 Solanum pennellii HOM05D001900 ORTHO05D003003 1.5e-29 134.8 95 67.4
Dinv25044 Davidia involucrata HOM05D001900 ORTHO05D003003 2.5e-29 134.0 83 73.5
ECA238G2580 Erigeron canadensis HOM05D001900 ORTHO05D003003 2.5e-29 134.0 83 73.5
Lsat_1_v5_gn_2_103681 Lactuca sativa HOM05D001900 ORTHO05D003003 3.3e-29 133.7 83 73.5
CAN.G959.51 Capsicum annuum HOM05D001900 ORTHO05D003003 4.3e-29 133.3 83 74.7
Duzib128G0536 Durio zibethinus HOM05D001900 ORTHO05D003003 4.3e-29 133.3 83 73.5
QL07p018995 Quercus lobata HOM05D001900 ORTHO05D003003 4.3e-29 133.3 83 72.3
Solyc01g020220.3 Solanum lycopersicum HOM05D001900 ORTHO05D003003 4.3e-29 133.3 83 74.7
Sopen01g010500 Solanum pennellii HOM05D001900 ORTHO05D003003 4.3e-29 133.3 95 66.3
Haze_20410 Corylus avellana HOM05D001900 ORTHO05D003003 5.6e-29 132.9 83 72.3
Gohir.A13G163700 Gossypium hirsutum HOM05D001900 ORTHO05D003003 5.6e-29 132.9 83 74.7
Gohir.D13G166600 Gossypium hirsutum HOM05D001900 ORTHO05D003003 5.6e-29 132.9 83 74.7
Nitab4.5_0000121g0030 Nicotiana tabacum HOM05D001900 ORTHO05D003003 5.6e-29 132.9 83 74.7
Duzib177G0529 Durio zibethinus HOM05D001900 ORTHO05D003003 7.3e-29 132.5 91 68.1
AUR62038453 Chenopodium quinoa HOM05D001900 ORTHO05D003003 9.6e-29 132.1 83 69.9
AUR62042150 Chenopodium quinoa HOM05D001900 ORTHO05D003003 9.6e-29 132.1 83 69.9
Peaxi162Scf00258g00523 Petunia axillaris HOM05D001900 ORTHO05D003003 9.6e-29 132.1 83 73.5
Prupe.1G194700 Prunus persica HOM05D001900 ORTHO05D003003 9.6e-29 132.1 83 72.3
vmacro07653 Vaccinium macrocarpon HOM05D001900 ORTHO05D003003 9.6e-29 132.1 84 71.4
CDE06G2247 Ceratophyllum demersum HOM05D001900 ORTHO05D003003 1.3e-28 131.7 86 69.8
Prupe.7G013300 Prunus persica HOM05D001900 ORTHO05D003003 1.3e-28 131.7 83 72.3
Rhsim03G0049600 Rhododendron simsii HOM05D001900 ORTHO05D003003 1.3e-28 131.7 83 71.1
Sabra19G0050300 Salix brachista HOM05D001900 ORTHO05D003003 1.3e-28 131.7 83 74.7
Thecc.05G242500 Theobroma cacao HOM05D001900 ORTHO05D003003 1.3e-28 131.7 83 74.7
TAR623G1140 Trochodendron aralioides HOM05D001900 ORTHO05D003003 1.3e-28 131.7 83 73.5
GSVIVG01022436001 Vitis vinifera HOM05D001900 ORTHO05D003003 1.3e-28 131.7 83 72.3
EL10Ac5g11694 Beta vulgaris HOM05D001900 ORTHO05D003003 1.6e-28 131.3 83 69.9
CDE07G1554 Ceratophyllum demersum HOM05D001900 ORTHO05D003003 1.6e-28 131.3 83 71.1
Gorai.013G195900 Gossypium raimondii HOM05D001900 ORTHO05D003003 1.6e-28 131.3 83 74.7
MD12G1011300 Malus domestica HOM05D001900 ORTHO05D003003 1.6e-28 131.3 83 72.3
PGR042G3124 Punica granatum HOM05D001900 ORTHO05D003003 1.6e-28 131.3 83 72.3
RcHm_v2.0_Chr3g0496081 Rosa chinensis HOM05D001900 ORTHO05D003003 1.6e-28 131.3 83 71.1
Solyc01g020440.3 Solanum lycopersicum HOM05D001900 ORTHO05D003003 1.6e-28 131.3 83 73.5
Sopen01g015760 Solanum pennellii HOM05D001900 ORTHO05D003003 1.6e-28 131.3 83 73.5
unitig_21.g20661 Utricularia gibba HOM05D001900 ORTHO05D003003 1.6e-28 131.3 83 72.3
Cpa.g.sc161.34 Carica papaya HOM05D001900 ORTHO05D003003 2.1e-28 131.0 83 72.3
CiPaw.09G166800 Carya illinoinensis HOM05D001900 ORTHO05D003003 2.1e-28 131.0 83 71.1
MD04G1041300 Malus domestica HOM05D001900 ORTHO05D003003 2.1e-28 131.0 83 71.1
Nn2g14554 Nelumbo nucifera HOM05D001900 ORTHO05D003003 2.1e-28 131.0 83 73.5
Potri.019G040000 Populus trichocarpa HOM05D001900 ORTHO05D003003 2.1e-28 131.0 83 73.5
Actinidia37818 Actinidia chinensis HOM05D001900 ORTHO05D003003 2.8e-28 130.6 83 71.1
CSS0031386 Camellia sinensis var. sinensis HOM05D001900 ORTHO05D003003 2.8e-28 130.6 83 71.1
CANSAT54G0333 Cannabis sativa HOM05D001900 ORTHO05D003003 2.8e-28 130.6 83 71.1
Ciclev10020854m.g Citrus clementina HOM05D001900 ORTHO05D003003 2.8e-28 130.6 83 73.5
Lj1A1072T25 Lonicera japonica HOM05D001900 ORTHO05D003003 2.8e-28 130.6 110 59.1
Sed0019827 Sechium edule HOM05D001900 ORTHO05D003003 2.8e-28 130.6 83 69.9
TWI32G1012 Tripterygium wilfordii HOM05D001900 ORTHO05D003003 3.6e-28 130.2 95 63.2
BolC7t44638H Brassica oleracea HOM05D001900 ORTHO05D003003 4.8e-28 129.8 83 71.1
Cc06_g21450 Coffea canephora HOM05D001900 ORTHO05D003003 4.8e-28 129.8 83 68.7
MELO3C008864.2 Cucumis melo HOM05D001900 ORTHO05D003003 4.8e-28 129.8 83 68.7
PSO339G1619 Papaver somniferum HOM05D001900 ORTHO05D003003 4.8e-28 129.8 83 71.1
CARHR186260 Cardamine hirsuta HOM05D001900 ORTHO05D003003 6.2e-28 129.4 83 69.9
AL6G39200 Arabidopsis lyrata HOM05D001900 ORTHO05D003003 8.1e-28 129.0 83 71.1
BcaB04g19686 Brassica carinata HOM05D001900 ORTHO05D003003 8.1e-28 129.0 84 70.2
A02p38740 Brassica napus HOM05D001900 ORTHO05D003003 8.1e-28 129.0 83 71.1
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 8.1e-28 129.0 83 71.1
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 8.1e-28 129.0 83 71.1
BraA02t08851Z Brassica rapa HOM05D001900 ORTHO05D003003 8.1e-28 129.0 83 71.1
BraA06t26658Z Brassica rapa HOM05D001900 ORTHO05D003003 8.1e-28 129.0 83 71.1
Carub.0006s2482 Capsella rubella HOM05D001900 ORTHO05D003003 8.1e-28 129.0 83 71.1
HanXRQChr14g0453631 Helianthus annuus HOM05D001900 ORTHO05D003003 8.1e-28 129.0 83 74.7
Lj2g0025638 Lotus japonicus HOM05D001900 ORTHO05D003003 8.1e-28 129.0 83 72.3
MBI01_g21128_MAGBIO Magnolia biondii HOM05D001900 ORTHO05D003003 8.1e-28 129.0 83 68.7
AT5G27740 Arabidopsis thaliana HOM05D001900 ORTHO05D003003 1.1e-27 128.6 95 62.1
BcaB07g34200 Brassica carinata HOM05D001900 ORTHO05D003003 1.1e-27 128.6 83 71.1
Cfa017715 Carpinus fangiana HOM05D001900 ORTHO05D003003 1.1e-27 128.6 83 69.9
CsaV3_4G031600 Cucumis sativus L. HOM05D001900 ORTHO05D003003 1.1e-27 128.6 83 67.5
Eucgr.A02138 Eucalyptus grandis HOM05D001900 ORTHO05D003003 1.1e-27 128.6 83 71.1
Aqoxy2G00581 Aquilegia oxysepala HOM05D001900 ORTHO05D003003 1.4e-27 128.3 83 69.9
MD04G1041000 Malus domestica HOM05D001900 ORTHO05D003003 1.4e-27 128.3 80 71.2
Sp2g20910 Schrenkiella parvula HOM05D001900 ORTHO05D003003 1.4e-27 128.3 83 69.9
Aa31LG11G9510 Aethionema arabicum HOM05D001900 ORTHO05D003003 1.8e-27 127.9 83 69.9
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 1.8e-27 127.9 83 69.9
BolC2t11892H Brassica oleracea HOM05D001900 ORTHO05D003003 1.8e-27 127.9 83 69.9
FAN15G0949 Fragaria x ananassa HOM05D001900 ORTHO05D003003 1.8e-27 127.9 85 68.2
PSO384G1286 Papaver somniferum HOM05D001900 ORTHO05D003003 2.4e-27 127.5 83 71.1
Ca_11698_v3 Cicer arietinum L. HOM05D001900 ORTHO05D003003 3.1e-27 127.1 91 63.7
Nitab4.5_0002915g0020 Nicotiana tabacum HOM05D001900 ORTHO05D003003 3.1e-27 127.1 83 72.3
Manes.08G153200 Manihot esculenta HOM05D001900 ORTHO05D003003 4.0e-27 126.7 83 73.5
BcaC03g17801 Brassica carinata HOM05D001900 ORTHO05D003003 5.3e-27 126.3 83 68.7
Ca_25350_v3 Cicer arietinum L. HOM05D001900 ORTHO05D003003 6.9e-27 125.9 83 68.7
Medtr6g471010 Medicago truncatula HOM05D001900 ORTHO05D003003 6.9e-27 125.9 83 68.7
TPR.G25364 Trifolium pratense HOM05D001900 ORTHO05D003003 6.9e-27 125.9 83 68.7
FvH4_2g04970 Fragaria vesca HOM05D001900 ORTHO05D003003 9.0e-27 125.6 83 67.5
FAN15G0323 Fragaria x ananassa HOM05D001900 ORTHO05D003003 9.0e-27 125.6 83 67.5
FAN20G1512 Fragaria x ananassa HOM05D001900 ORTHO05D003003 9.0e-27 125.6 83 67.5
FAN24G3538 Fragaria x ananassa HOM05D001900 ORTHO05D003003 9.0e-27 125.6 83 67.5
Glyma.05G089100 Glycine max HOM05D001900 ORTHO05D003003 9.0e-27 125.6 83 69.9
Lalb_Chr02g0157371 Lupinus albus HOM05D001900 ORTHO05D003003 9.0e-27 125.6 83 68.7
Medtr6g027590 Medicago truncatula HOM05D001900 ORTHO05D003003 9.0e-27 125.6 83 68.7
Psat1g091400 Pisum sativum HOM05D001900 ORTHO05D003003 9.0e-27 125.6 83 68.7
arahy.Tifrunner.gnm1.ann1.EEI187 Arachis hypogaea HOM05D001900 ORTHO05D003003 1.5e-26 124.8 83 68.7
arahy.Tifrunner.gnm1.ann1.FX2G1C Arachis hypogaea HOM05D001900 ORTHO05D003003 1.5e-26 124.8 83 68.7
Thhalv10004490m.g Eutrema salsugineum HOM05D001900 ORTHO05D003003 1.5e-26 124.8 83 68.7
FAN14G2403 Fragaria x ananassa HOM05D001900 ORTHO05D003003 1.5e-26 124.8 81 69.1
Phvul.004G076500 Phaseolus vulgaris HOM05D001900 ORTHO05D003003 1.5e-26 124.8 83 69.9
VMungo0464G0076 Vigna mungo HOM05D001900 ORTHO05D003003 2.0e-26 124.4 83 68.7
FvH4_7g02410 Fragaria vesca HOM05D001900 ORTHO05D003003 2.6e-26 124.0 81 67.9
FAN02G2150 Fragaria x ananassa HOM05D001900 ORTHO05D003003 2.6e-26 124.0 81 67.9
Psat1g030560 Pisum sativum HOM05D001900 ORTHO05D003003 5.8e-26 122.9 83 67.5
ATR0697G074 Amborella trichopoda HOM05D001900 ORTHO05D003003 1.3e-25 121.7 83 66.3
HPP92_015892 Vanilla planifolia HOM05D001900 ORTHO05D003003 1.7e-25 121.3 83 65.1
Os03g0792600 Oryza sativa ssp. japonica HOM05D001900 ORTHO05D003003 2.9e-25 120.6 83 63.9
HanXRQChr14g0433601 Helianthus annuus HOM05D001900 ORTHO05D003003 3.8e-25 120.2 80 70.0
FAN07G0041 Fragaria x ananassa HOM05D001900 ORTHO05D003003 4.9e-25 119.8 84 66.7
Zm00001eb213170 Zea mays HOM05D001900 ORTHO05D003003 4.9e-25 119.8 81 64.2
Zm00001eb060330 Zea mays HOM05D001900 ORTHO05D003003 1.1e-24 118.6 81 64.2
Pp3c25_5630 Physcomitrium patens HOM05D001900 ORTHO05D003003 2.4e-24 117.5 81 64.2
AagrBONN_evm.TU.Sc2ySwM_117.2372 Anthoceros agrestis HOM05D001900 ORTHO05D003003 5.4e-24 116.3 83 60.2
CBR_g29296 Chara braunii HOM05D001900 ORTHO05D003003 2.1e-23 114.4 81 64.2
SMO271G0133 Selaginella moellendorffii HOM05D001900 ORTHO05D003003 1.0e-22 112.1 81 60.5
ClCG04G004690 Citrullus lanatus HOM05D001900 ORTHO05D003003 2.3e-22 110.9 120 47.5
Mapoly0170s0033 Marchantia polymorpha HOM05D001900 ORTHO05D003003 1.1e-21 108.6 81 56.8
MCO13G013 Micromonas commoda HOM05D001900 ORTHO05D003003 1.4e-19 101.7 83 55.4
THA.LOC104824562 Tarenaya hassleriana HOM05D001900 ORTHO05D003003 9.0e-19 99.0 83 59.0
Cre16.g679950 Chlamydomonas reinhardtii HOM05D001900 ORTHO05D003003 2.0e-18 97.8 83 55.4
Thhalv10005385m.g Eutrema salsugineum HOM05D001900 ORTHO05D003003 1.1e-16 92.0 63 66.7
Atru.chr2.1514 Acer truncatum HOM05D001900 ORTHO05D003003 1.2e-15 88.6 58 69.0
HanXRQChr09g0242001 Helianthus annuus HOM05D001900 ORTHO05D003003 1.6e-15 88.2 80 58.8
SGA_v2.0_scaffold69G23218 Striga asiatica HOM05D001900 ORTHO05D003003 4.6e-15 86.7 93 50.5
PRCOL_00007014 Prasinoderma coloniale HOM05D001900 ORTHO05D003003 1.3e-14 85.1 83 48.2
Lsat_1_v5_gn_3_116420 Lactuca sativa HOM05D001378 ORTHO05D001249 1.3e-12 78.6 54 61.1
FAN16G0252 Fragaria x ananassa HOM05D006358 ORTHO05D008185 2.1e-12 77.8 96 44.8
FvH4_7g06980 Fragaria vesca HOM05D001900 ORTHO05D046091 3.7e-12 77.0 49 67.3
FAN24G2872 Fragaria x ananassa HOM05D001900 ORTHO05D046091 1.1e-11 75.5 48 66.7
Nitab4.5_0009998g0010 Nicotiana tabacum HOM05D001900 ORTHO05D003003 1.1e-11 75.5 50 68.0
Ah.12g061760 Amaranthus hybridus HOM05D001900 ORTHO05D003003 4.0e-11 73.6 44 70.5
SEGI_07940 Sequoiadendron giganteum HOM05D001900 ORTHO05D003003 4.0e-11 73.6 48 66.7
FvH4_1g23560 Fragaria vesca HOM05D001900 ORTHO05D003003 4.5e-10 70.1 44 70.5
arahy.Tifrunner.gnm1.ann1.7G7S7J Arachis hypogaea HOM05D001900 ORTHO05D003003 1.0e-09 68.9 51 58.8
Prupe.4G268900 Prunus persica HOM05D001900 ORTHO05D003003 8.4e-09 65.9 44 72.7
Cfa025645 Carpinus fangiana HOM05D001900 ORTHO05D003003 1.9e-08 64.7 86 36.0
Haze_26788 Corylus avellana HOM05D001900 ORTHO05D003003 1.8e-06 58.2 74 37.8
Nitab4.5_0009998g0020 Nicotiana tabacum HOM05D001900 ORTHO05D003003 5.1e-06 56.6 33 78.8
C05p57190 Brassica napus HOM05D001900 ORTHO05D003003 6.7e-06 56.2 33 75.8


User provided reference genes

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