Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 0.0e+00 1611.7 813 100.0
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1160.2 802 75.8
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1149.4 805 75.7
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1125.2 787 74.8
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1099.7 796 73.1
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1088.9 790 72.0
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1088.2 820 70.0
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1087.4 798 72.1
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1087.4 798 72.1
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1085.1 812 71.4
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1084.3 794 71.9
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1083.6 790 72.5
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1083.2 759 73.6
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1082.0 800 71.2
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1080.9 802 71.2
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1080.1 793 72.5
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1080.1 736 75.1
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1079.7 745 74.4
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1079.3 809 71.4
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1079.3 790 72.2
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1078.9 790 72.2
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1076.6 792 72.2
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 5.6e-312 1073.5 804 70.5
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 2.2e-311 1072.0 727 75.1
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 5.0e-311 1070.8 773 73.2
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 2.4e-310 1068.5 795 71.3
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 4.2e-310 1067.8 792 71.2
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 4.2e-310 1067.8 801 70.9
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 2.7e-309 1065.1 792 71.5
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 6.1e-309 1063.9 809 70.1
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 1.4e-308 1062.8 721 75.3
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 1.4e-308 1062.8 801 70.0
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 1.8e-308 1062.4 812 69.6
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 1.8e-308 1062.4 758 73.2
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 6.7e-308 1060.4 723 76.6
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 8.8e-308 1060.1 759 72.3
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 8.8e-308 1060.1 793 69.9
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 3.3e-307 1058.1 812 69.6
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.3e-306 1056.2 835 68.4
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 2.2e-306 1055.4 796 71.0
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 2.8e-306 1055.0 830 68.2
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 1.4e-305 1052.7 801 69.8
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 6.9e-305 1050.4 739 74.0
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.2e-304 1049.7 835 67.9
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 1.2e-304 1049.7 722 74.5
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 1.2e-304 1049.7 798 69.7
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 2.6e-304 1048.5 813 69.0
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 3.4e-304 1048.1 809 69.0
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 7.7e-304 1047.0 800 69.9
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 2.9e-303 1045.0 721 74.6
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 1.9e-302 1042.3 804 68.7
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 4.2e-302 1041.2 792 69.9
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 5.5e-302 1040.8 726 74.2
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 7.2e-302 1040.4 796 69.5
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 2.1e-301 1038.9 710 73.9
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 6.1e-301 1037.3 706 75.6
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 2.3e-300 1035.4 713 74.3
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 2.3e-300 1035.4 779 70.2
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 3.0e-300 1035.0 794 69.4
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 3.0e-300 1035.0 806 68.6
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 8.8e-300 1033.5 863 65.0
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 8.8e-300 1033.5 863 65.0
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 2.0e-299 1032.3 709 75.0
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 2.0e-299 1032.3 709 75.0
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 2.0e-299 1032.3 793 70.2
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 2.2e-298 1028.9 785 69.6
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 4.8e-298 1027.7 731 71.7
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 4.8e-298 1027.7 736 71.3
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 8.2e-298 1026.9 751 70.7
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 1.1e-297 1026.5 705 75.3
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 1.4e-297 1026.2 800 69.5
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 1.8e-297 1025.8 713 74.1
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 1.6e-296 1022.7 795 68.8
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 4.2e-294 1014.6 807 68.5
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 2.7e-293 1011.9 810 67.3
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 2.2e-290 1002.3 788 66.5
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.8e-289 999.2 996 57.5
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 9.1e-289 996.9 825 65.8
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 3.5e-288 995.0 803 66.9
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.3e-279 966.5 833 64.0
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 2.5e-278 962.2 865 62.0
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 3.6e-277 958.4 718 70.1
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 5.4e-273 944.5 750 67.9
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 3.5e-272 941.8 756 65.6
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 3.6e-269 931.8 739 65.5
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 3.9e-263 911.8 653 72.1
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 1.3e-258 896.7 740 63.1
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 1.7e-255 886.3 722 65.8
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 4.7e-253 878.2 571 77.6
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 2.2e-250 869.4 684 65.1
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 1.2e-248 863.6 558 78.5
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 6.0e-248 861.3 647 71.6
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.7e-247 859.8 551 79.5
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.5e-246 856.7 581 75.9
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.1e-245 852.8 652 70.7
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 8.1e-245 850.9 560 77.3
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 3.4e-243 845.5 646 70.1
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.3e-231 806.2 676 64.5
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 2.3e-231 806.2 705 60.3
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 1.6e-224 783.5 534 76.0
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 4.6e-224 781.9 704 59.4
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.1e-222 777.3 515 76.9
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.3e-202 710.7 692 55.5
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 5.3e-196 688.7 546 67.9
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 1.1e-190 671.0 425 80.5
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 4.8e-189 665.6 459 73.0
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 1.8e-164 583.9 455 67.9
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 2.3e-162 577.0 394 74.4
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 5.4e-156 555.8 443 65.5
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 1.5e-150 537.7 386 72.0
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 4.0e-135 486.5 487 56.5
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.6e-112 411.4 680 36.8
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 9.3e-108 395.6 735 35.0
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 9.6e-105 385.6 397 55.2
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 1.7e-101 374.8 388 55.9
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 5.0e-93 346.7 763 33.9
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 9.3e-92 342.4 357 54.6
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.2e-88 331.3 227 75.3
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 2.2e-85 321.2 570 36.8
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 9.7e-73 279.3 161 82.0
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.5e-65 255.4 203 69.5
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.1e-59 235.0 168 64.9
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 3.7e-56 224.2 206 64.1
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.5e-54 217.2 208 53.8
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 2.5e-52 211.5 251 53.0
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 4.3e-36 157.5 347 36.0
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 7.3e-36 156.8 220 41.8
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.4e-34 152.5 80 91.2
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 8.9e-34 149.8 97 73.2
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 1.5e-33 149.1 143 55.9
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 9.2e-31 139.8 94 72.3
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 1.2e-30 139.4 156 55.1
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.2e-30 139.4 144 55.6
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 1.0e-29 136.3 71 81.7
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 2.5e-28 131.7 138 55.8
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 3.6e-27 127.9 69 88.4
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 5.4e-23 114.0 74 79.7
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 5.4e-23 114.0 91 69.2
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.1e-22 112.1 79 75.9
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 2.0e-17 95.5 60 71.7
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 2.9e-16 91.7 49 77.6
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.1e-15 89.7 63 69.8
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 7.1e-15 87.0 50 76.0
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 1.7e-13 82.4 143 35.0


User provided reference genes

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