Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02856 Striga asiatica HOM05D000113 ORTHO05D405928 1.4e-149 533.1 305 100.0
SGA_v2.0_scaffold1G00333 Striga asiatica HOM05D000113 ORTHO05D004634 3.5e-07 60.1 76 51.3
Duzib187G1430 Durio zibethinus HOM05D000113 ORTHO05D004634 4.5e-07 59.7 76 50.0
SGA_v2.0_scaffold87G27143 Striga asiatica HOM05D000113 ORTHO05D004634 5.9e-07 59.3 76 50.0
MSTRG.13314 Avicennia marina HOM05D000113 ORTHO05D004634 1.3e-06 58.2 76 48.7
Dinv16087 Davidia involucrata HOM05D000113 ORTHO05D004634 1.3e-06 58.2 76 48.7
Migut.E00026 Erythranthe guttata HOM05D000113 ORTHO05D004634 1.3e-06 58.2 76 47.4
Eucgr.H04653 Eucalyptus grandis HOM05D000113 ORTHO05D004634 1.3e-06 58.2 76 50.0
Gohir.A13G122700 Gossypium hirsutum HOM05D000113 ORTHO05D004634 1.3e-06 58.2 76 50.0
Lj6g0023430 Lotus japonicus HOM05D000113 ORTHO05D004634 1.3e-06 58.2 71 53.5
Nn4g22369 Nelumbo nucifera HOM05D000113 ORTHO05D004634 1.3e-06 58.2 76 48.7
HPP92_020092 Vanilla planifolia HOM05D000113 ORTHO05D004634 1.3e-06 58.2 76 48.7
CSS0001396 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D004634 1.7e-06 57.8 76 48.7
CANSAT80G2661 Cannabis sativa HOM05D000113 ORTHO05D004634 1.7e-06 57.8 71 52.1
Lj8C80G9 Lonicera japonica HOM05D000113 ORTHO05D004634 1.7e-06 57.8 76 48.7
Mapoly0074s0050 Marchantia polymorpha HOM05D000113 ORTHO05D004634 2.3e-06 57.4 76 48.7
Prupe.1G229100 Prunus persica HOM05D000113 ORTHO05D004634 2.3e-06 57.4 71 52.1
FvH4_3g13400 Fragaria vesca HOM05D000113 ORTHO05D004634 2.9e-06 57.0 71 50.7
FAN11G3859 Fragaria x ananassa HOM05D000113 ORTHO05D004634 2.9e-06 57.0 71 50.7
FAN25G3356 Fragaria x ananassa HOM05D000113 ORTHO05D004634 2.9e-06 57.0 71 50.7
MD10G1223900 Malus domestica HOM05D000113 ORTHO05D004634 2.9e-06 57.0 69 52.2
vmacro01072 Vaccinium macrocarpon HOM05D000113 ORTHO05D004634 2.9e-06 57.0 76 48.7
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 3.8e-06 56.6 76 48.7
Oeu019036.1 Olea europaea HOM05D000113 ORTHO05D004634 3.8e-06 56.6 76 47.4
Medtr2g098440 Medicago truncatula HOM05D000113 ORTHO05D004634 5.0e-06 56.2 71 50.7
RcHm_v2.0_Chr5g0022111 Rosa chinensis HOM05D000113 ORTHO05D004634 5.0e-06 56.2 71 50.7
Hund14457 Selenicereus undatus HOM05D000113 ORTHO05D004634 5.0e-06 56.2 76 47.4
arahy.Tifrunner.gnm1.ann1.LX1KXR Arachis hypogaea HOM05D000113 ORTHO05D004634 6.5e-06 55.8 71 50.7
arahy.Tifrunner.gnm1.ann1.U4BLLZ Arachis hypogaea HOM05D000113 ORTHO05D004634 6.5e-06 55.8 71 50.7
arahy.Tifrunner.gnm1.ann1.XJJ2Y4 Arachis hypogaea HOM05D000113 ORTHO05D004634 6.5e-06 55.8 71 50.7
Ca_01274_v3 Cicer arietinum L. HOM05D000113 ORTHO05D004634 6.5e-06 55.8 71 50.7
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 6.5e-06 55.8 71 50.7
CsaV3_7G027360 Cucumis sativus L. HOM05D000113 ORTHO05D004634 6.5e-06 55.8 71 50.7
Glyma.13G342400 Glycine max HOM05D000113 ORTHO05D004634 6.5e-06 55.8 71 50.7
Glyma.15G031900 Glycine max HOM05D000113 ORTHO05D004634 6.5e-06 55.8 71 50.7
MD16G1117100 Malus domestica HOM05D000113 ORTHO05D004634 6.5e-06 55.8 71 50.7
PGR044G0800 Punica granatum HOM05D000113 ORTHO05D004634 6.5e-06 55.8 76 48.7
PGR119G0528 Punica granatum HOM05D000113 ORTHO05D004634 6.5e-06 55.8 76 48.7
CSS0020206 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D004634 8.6e-06 55.5 76 47.4
CiPaw.05G112500 Carya illinoinensis HOM05D000113 ORTHO05D004634 8.6e-06 55.5 71 50.7
QL03p054215 Quercus lobata HOM05D000113 ORTHO05D004634 8.6e-06 55.5 71 50.7
SalBow8G3598 Salvia bowleyana HOM05D000113 ORTHO05D004634 8.6e-06 55.5 76 47.4
Hund25451 Selenicereus undatus HOM05D000113 ORTHO05D004634 8.6e-06 55.5 71 46.5
Thecc.07G168000 Theobroma cacao HOM05D000113 ORTHO05D004634 8.6e-06 55.5 76 47.4


User provided reference genes

Program Settings