Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 1.1e-290 1002.7 550 100.0
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.3e-148 530.8 581 56.6
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 2.1e-143 513.5 593 50.9
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 5.3e-139 498.8 495 56.0
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 2.1e-127 460.3 510 51.4
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 2.1e-127 460.3 569 50.3
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 2.7e-127 459.9 526 50.6
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.0e-126 458.0 553 49.5
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 1.1e-123 448.0 522 50.4
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 7.7e-122 441.8 542 48.2
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.3e-121 441.0 534 48.5
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.7e-121 440.7 542 49.3
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 5.5e-120 435.6 569 48.9
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.6e-119 434.1 522 48.1
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 4.6e-119 432.6 555 47.4
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 4.6e-119 432.6 531 48.6
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 7.9e-119 431.8 570 47.4
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 6.7e-118 428.7 454 54.0
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 6.7e-118 428.7 527 49.3
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 6.7e-118 428.7 564 45.9
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 5.7e-117 425.6 417 55.9
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.8e-116 423.3 560 46.2
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 4.8e-116 422.5 546 47.1
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 8.2e-116 421.8 558 45.5
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 1.1e-115 421.4 552 47.6
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.8e-115 420.6 467 52.5
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 5.3e-115 419.1 556 47.3
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.5e-114 417.5 572 45.1
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.4e-114 416.4 517 49.5
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 3.4e-114 416.4 536 45.3
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 4.5e-114 416.0 489 49.9
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 5.9e-114 415.6 533 46.7
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 7.7e-114 415.2 455 53.6
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.7e-113 414.1 540 48.5
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 2.9e-113 413.3 417 54.2
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 2.9e-113 413.3 527 48.8
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 3.2e-112 409.8 508 48.6
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 5.5e-112 409.1 557 44.9
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.2e-111 407.9 540 45.9
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.1e-111 407.1 526 47.7
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.0e-110 404.8 540 45.4
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 3.0e-110 403.3 594 45.1
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 3.9e-110 402.9 514 47.9
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.1e-109 401.4 497 50.3
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 2.8e-108 396.7 499 47.1
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 2.4e-107 393.7 500 47.4
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 5.3e-107 392.5 430 54.2
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 1.5e-106 391.0 442 51.1
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.5e-106 391.0 483 48.7
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.0e-106 390.6 454 50.7
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 2.0e-106 390.6 538 44.1
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.9e-105 386.7 511 45.0
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.1e-104 384.8 491 47.5
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.4e-104 384.4 589 42.8
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 2.5e-104 383.6 535 43.4
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 2.5e-104 383.6 388 56.2
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 9.4e-104 381.7 481 47.6
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.2e-103 381.3 455 49.7
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 2.7e-103 380.2 439 50.8
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.3e-102 377.1 409 52.3
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 3.9e-102 376.3 488 45.7
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 5.2e-102 375.9 441 51.0
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 8.8e-102 375.2 427 51.1
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 2.0e-101 374.0 539 42.9
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 7.4e-101 372.1 523 43.2
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 9.7e-101 371.7 419 52.0
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.7e-100 370.9 531 44.8
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 2.2e-100 370.5 529 43.3
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 2.8e-100 370.2 546 42.7
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 4.8e-100 369.4 489 45.0
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 6.3e-100 369.0 416 51.0
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 4.1e-99 366.3 445 49.7
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 2.0e-98 364.0 462 46.8
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 3.5e-98 363.2 486 46.5
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 8.0e-95 352.1 397 49.6
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 8.0e-95 352.1 462 46.3
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.3e-94 350.5 513 42.5
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 6.7e-94 349.0 479 45.5
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 4.4e-93 346.3 580 41.6
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 2.2e-92 344.0 447 45.9
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.4e-91 341.3 421 48.9
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 9.1e-91 338.6 504 43.1
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.9e-90 335.9 474 45.8
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 4.2e-88 329.7 433 45.3
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 4.7e-87 326.2 398 48.0
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 8.0e-87 325.5 375 49.9
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 3.4e-85 320.1 540 40.2
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.7e-81 307.8 472 43.4
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.6e-79 301.2 217 70.5
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 8.9e-78 295.4 447 43.2
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 4.5e-74 283.1 373 46.1
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 1.3e-73 281.6 186 73.1
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.9e-72 277.7 357 46.2
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 3.3e-72 276.9 467 39.2
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.6e-69 267.3 366 43.2
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 9.8e-69 265.4 421 38.7
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.3e-68 265.0 492 38.0
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 3.7e-68 263.5 427 41.9
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 3.7e-68 263.5 459 36.6
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 4.1e-67 260.0 389 46.5
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 6.8e-62 242.7 448 38.4
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.7e-60 238.0 192 61.5
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.7e-60 238.0 348 43.4
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.3e-60 235.7 332 46.7
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.9e-59 234.6 332 46.7
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 4.1e-59 233.4 184 64.1
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 6.2e-55 219.5 193 57.0
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.1e-54 217.2 181 57.5
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 5.2e-54 216.5 149 67.8
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 6.8e-54 216.1 199 55.3
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 7.5e-53 212.6 167 63.5
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.7e-52 211.5 181 56.9
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 3.2e-51 207.2 181 56.9
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 3.2e-51 207.2 290 44.8
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 7.1e-51 206.1 154 67.5
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.6e-50 204.9 167 62.9
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.1e-50 204.5 328 41.5
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 1.3e-49 201.8 167 62.3
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 5.6e-48 196.4 183 57.9
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 8.9e-46 189.1 192 51.0
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 3.4e-45 187.2 192 51.0
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 4.4e-45 186.8 192 50.5
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 9.9e-45 185.7 196 49.0
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 9.2e-43 179.1 121 71.1
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.6e-42 178.3 177 52.5
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 7.8e-42 176.0 184 48.9
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.5e-40 171.0 180 51.1
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 1.6e-39 168.3 155 58.7
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.5e-37 161.8 170 48.8
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 2.3e-33 147.9 262 39.7
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-32 145.2 210 39.5
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 3.8e-28 130.6 143 53.1
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.4e-28 129.8 171 46.8
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.1e-27 126.3 114 61.4
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.8e-25 121.7 342 27.5
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.3e-23 115.5 93 58.1
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.6e-23 115.2 83 72.3
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.8e-22 111.7 199 32.7
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 7.6e-21 106.3 230 33.0
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 2.2e-20 104.8 121 41.3
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 4.9e-20 103.6 123 41.5
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.6e-18 98.6 63 69.8
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 5.7e-16 90.1 66 63.6
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 7.4e-16 89.7 88 50.0
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 2.1e-15 88.2 186 29.6
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 2.8e-15 87.8 51 72.5
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 3.8e-12 77.4 358 26.5
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 4.2e-11 73.9 238 31.5
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.9e-08 65.1 56 64.3
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 2.5e-08 64.7 47 68.1
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.5e-08 64.7 47 68.1
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 2.8e-07 61.2 41 75.6
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 2.4e-06 58.2 35 71.4


User provided reference genes

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