Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 0.0e+00 1361.7 766 100.0
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 5.7e-293 1010.7 796 71.9
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 1.2e-277 959.9 795 67.9
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 2.1e-274 949.1 796 66.7
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 5.1e-273 944.5 796 66.5
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 6.6e-273 944.1 799 65.5
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 8.6e-273 943.7 800 66.2
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 1.6e-271 939.5 799 66.7
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 1.6e-271 939.5 798 66.3
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 1.6e-271 939.5 798 66.4
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 1.8e-270 936.0 798 65.3
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 8.9e-270 933.7 799 66.1
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 4.4e-269 931.4 798 65.0
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 7.6e-269 930.6 796 65.5
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 1.3e-268 929.9 786 59.8
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 1.7e-268 929.5 799 65.8
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 6.4e-268 927.5 799 65.8
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 6.4e-268 927.5 799 65.8
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 6.4e-268 927.5 796 65.2
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.1e-267 926.8 796 65.2
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 1.4e-267 926.4 799 65.5
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 2.4e-267 925.6 799 65.6
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 5.4e-267 924.5 799 65.3
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 2.1e-266 922.5 799 64.3
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 4.6e-266 921.4 799 65.5
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 1.0e-265 920.2 799 65.3
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 5.1e-265 917.9 798 64.8
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 5.1e-265 917.9 778 60.2
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 7.3e-264 914.1 796 64.4
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 9.6e-264 913.7 799 64.7
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 1.2e-263 913.3 796 64.4
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.6e-263 912.9 806 64.3
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 6.2e-263 911.0 799 64.7
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 8.1e-263 910.6 796 64.9
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 1.2e-261 906.7 796 57.9
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 2.6e-261 905.6 799 64.6
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 2.6e-261 905.6 777 65.8
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 4.9e-260 901.4 814 63.4
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.1e-259 900.2 823 62.8
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 1.2e-258 896.7 870 54.4
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 3.5e-258 895.2 800 63.4
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 7.8e-258 894.0 799 63.7
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 6.6e-257 891.0 799 63.8
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 8.7e-257 890.6 796 64.8
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 4.3e-256 888.3 801 63.2
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 7.3e-256 887.5 797 62.6
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 9.6e-256 887.1 801 61.9
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 2.1e-255 885.9 798 63.7
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 4.8e-255 884.8 797 64.7
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 3.1e-254 882.1 798 63.4
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 1.3e-252 876.7 796 55.8
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 3.2e-251 872.1 796 61.1
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 7.1e-251 870.9 767 64.5
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 1.2e-250 870.2 796 61.3
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 1.2e-250 870.2 792 61.9
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 2.7e-250 869.0 792 61.9
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 7.9e-250 867.5 800 62.4
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 1.0e-249 867.1 796 61.8
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 5.1e-249 864.8 796 60.6
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 6.7e-249 864.4 796 61.3
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 1.5e-248 863.2 796 61.4
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 1.5e-248 863.2 839 61.0
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 2.5e-248 862.4 796 61.6
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 2.5e-248 862.4 796 61.6
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 2.5e-248 862.4 796 61.4
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 2.8e-247 859.0 792 61.2
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 2.8e-247 859.0 792 61.2
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 2.8e-247 859.0 796 60.7
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 2.8e-247 859.0 796 61.2
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 6.2e-247 857.8 796 61.2
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 2.6e-245 852.4 796 60.9
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 1.3e-244 850.1 800 62.2
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 1.3e-244 850.1 794 61.8
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 2.9e-244 849.0 798 61.8
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 1.4e-243 846.7 797 59.8
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 4.6e-242 841.6 800 61.6
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.0e-241 839.0 798 64.2
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 2.1e-239 832.8 836 57.9
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 1.8e-238 829.7 798 63.5
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 4.5e-237 825.1 851 56.8
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 5.8e-237 824.7 799 58.4
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 1.9e-235 819.7 658 68.5
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 2.5e-235 819.3 797 59.3
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 5.5e-235 818.1 815 60.1
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 6.7e-233 811.2 811 51.9
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 7.4e-232 807.7 760 61.3
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 9.7e-232 807.4 793 59.6
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 3.8e-228 795.4 711 65.0
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 1.8e-225 786.6 847 50.8
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 4.3e-224 781.9 683 65.2
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 2.8e-223 779.2 784 58.4
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 8.5e-220 767.7 711 63.9
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 1.1e-219 767.3 799 58.2
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 7.2e-219 764.6 757 59.6
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 2.6e-216 756.1 793 57.4
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 4.5e-213 745.3 787 58.6
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 2.2e-212 743.0 711 61.5
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 7.2e-211 738.0 792 54.8
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 6.5e-196 688.3 665 60.3
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 3.1e-190 669.5 602 58.1
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 2.5e-187 659.8 610 58.4
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 1.2e-173 614.4 531 66.9
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 9.2e-166 588.2 795 44.8
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 4.4e-160 569.3 798 46.1
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.6e-157 560.8 663 50.5
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 2.4e-153 547.0 808 45.5
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 1.4e-150 537.7 806 43.7
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 4.3e-139 499.6 525 57.9
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 4.8e-138 496.1 447 59.1
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 3.8e-127 459.9 782 44.6
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 2.6e-120 437.2 435 53.6
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 6.7e-116 422.5 340 74.7
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 9.4e-110 402.1 352 61.1
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 1.8e-105 387.9 298 69.1
SalBow6G1464 Salvia bowleyana HOM05D004755 ORTHO05D006137 5.5e-78 296.6 162 81.5
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 2.0e-75 288.1 335 56.1
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 3.7e-74 283.9 335 48.7
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 2.0e-67 261.5 338 55.3
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 7.0e-65 253.1 160 68.1
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 8.6e-55 219.5 774 25.1
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 4.0e-52 210.7 849 27.1
Cpa.g.sc62.109 Carica papaya HOM05D004755 ORTHO05D006137 4.4e-51 207.2 130 73.1
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 1.5e-46 192.2 454 37.0
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 5.4e-41 173.7 145 58.6
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 1.0e-39 169.5 216 43.1
SEGI_26304 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 3.3e-38 164.5 111 64.0
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.8e-34 151.0 124 61.3
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 6.4e-34 150.2 163 52.1
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.1e-29 135.2 160 46.9
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 1.6e-24 119.0 753 25.4
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 2.1e-24 118.6 85 65.9
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 6.6e-23 113.6 127 52.8
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 1.8e-20 105.5 115 56.5
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 2.4e-20 105.1 117 54.7
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 6.9e-20 103.6 120 51.7
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 9.9e-19 99.8 113 49.6
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 1.3e-18 99.4 114 54.4
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 2.4e-17 95.1 106 47.2
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 3.2e-17 94.7 114 52.6
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 5.4e-17 94.0 57 68.4
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 3.0e-15 88.2 67 68.7
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 5.1e-15 87.4 66 56.1
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 5.1e-15 87.4 69 53.6
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 1.3e-13 82.8 104 38.5
TAR376G1072 Trochodendron aralioides HOM05D004755 ORTHO05D006137 3.7e-13 81.3 66 60.6
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 9.0e-12 76.6 97 47.4
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.5e-11 75.9 115 40.0
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 7.1e-09 67.0 73 42.5
CARHR219250 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.6e-08 65.9 61 54.1
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 1.6e-08 65.9 60 60.0
FAN07G0204 Fragaria x ananassa HOM05D000453 ORTHO05D000387 7.9e-08 63.5 127 29.9
BcaB07g33726 Brassica carinata HOM05D002288 ORTHO05D002894 2.3e-07 62.0 132 31.8
TPR.G17575 Trifolium pratense HOM05D001335 ORTHO05D001184 6.7e-07 60.5 113 31.9
Ca_28149_v3 Cicer arietinum L. HOM05D000453 ORTHO05D000387 1.5e-06 59.3 167 24.6
Ca_30673_v3 Cicer arietinum L. HOM05D000453 ORTHO05D000387 1.5e-06 59.3 167 24.6
FAN12G3656 Fragaria x ananassa HOM05D000453 ORTHO05D000387 1.5e-06 59.3 150 28.0
GSVIVG01032921001 Vitis vinifera HOM05D005508 ORTHO05D006882 1.5e-06 59.3 170 28.2
Actinidia22488 Actinidia chinensis HOM05D004755 ORTHO05D056945 1.9e-06 58.9 121 35.5
QL05p061710 Quercus lobata HOM05D010675 ORTHO05D014145 7.4e-06 57.0 41 61.0
QL03p000458 Quercus lobata HOM05D010675 ORTHO05D014145 9.6e-06 56.6 41 61.0
QL09p000200 Quercus lobata HOM05D010675 ORTHO05D014145 9.6e-06 56.6 41 61.0
QL10p016783 Quercus lobata HOM05D010675 ORTHO05D014145 9.6e-06 56.6 41 61.0


User provided reference genes

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