Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5530G54650 Striga asiatica HOM05D003609 ORTHO05D004185 1.9e-167 592.4 305 100.0
SGA_v2.0_scaffold139G35343 Striga asiatica HOM05D003609 ORTHO05D004185 1.5e-74 283.9 266 59.4
SGA_v2.0_scaffold540G52794 Striga asiatica HOM05D027160 ORTHO05D399918 1.3e-46 191.0 208 55.8
SGA_v2.0_scaffold834G53652 Striga asiatica HOM05D003609 ORTHO05D004185 5.2e-27 125.9 59 96.6
SGA_v2.0_scaffold1G00234 Striga asiatica HOM05D003609 ORTHO05D004185 1.2e-23 114.8 58 87.9
vmacro03407 Vaccinium macrocarpon HOM05D003609 ORTHO05D004185 3.5e-23 113.2 154 42.9
SGA_v2.0_scaffold223G42845 Striga asiatica HOM05D003609 ORTHO05D004185 6.5e-22 109.0 59 81.4
Medtr8g089380 Medicago truncatula HOM05D003609 ORTHO05D004185 1.9e-21 107.5 59 79.7
Rhsim13G0119500 Rhododendron simsii HOM05D003609 ORTHO05D004185 1.9e-21 107.5 59 79.7
Actinidia07464 Actinidia chinensis HOM05D003609 ORTHO05D004185 2.5e-21 107.1 59 78.0
CSS0002848 Camellia sinensis var. sinensis HOM05D003609 ORTHO05D004185 3.2e-21 106.7 58 81.0
ECA236G2324 Erigeron canadensis HOM05D003609 ORTHO05D004185 3.2e-21 106.7 59 78.0
MSTRG.16279 Avicennia marina HOM05D003609 ORTHO05D004185 4.2e-21 106.3 59 78.0
SalBow8G0777 Salvia bowleyana HOM05D003609 ORTHO05D004185 4.2e-21 106.3 59 78.0
DCAR_027872 Daucus carota HOM05D003609 ORTHO05D004185 5.5e-21 105.9 59 78.0
Migut.M01878 Erythranthe guttata HOM05D003609 ORTHO05D004185 5.5e-21 105.9 59 78.0
TPR.G6260 Trifolium pratense HOM05D003609 ORTHO05D004185 5.5e-21 105.9 59 78.0
HanXRQChr04g0113571 Helianthus annuus HOM05D003609 ORTHO05D004185 9.4e-21 105.1 59 76.3
HanXRQChr15g0481541 Helianthus annuus HOM05D003609 ORTHO05D004185 9.4e-21 105.1 59 76.3
Lsat_1_v5_gn_7_31981 Lactuca sativa HOM05D003609 ORTHO05D004185 9.4e-21 105.1 59 76.3
Oeu015191.1 Olea europaea HOM05D003609 ORTHO05D004185 9.4e-21 105.1 59 76.3
TWI73G0261 Tripterygium wilfordii HOM05D003609 ORTHO05D004185 9.4e-21 105.1 59 76.3
COL.COLO4_17669 Corchorus olitorius HOM05D003609 ORTHO05D004185 1.2e-20 104.8 59 76.3
Hma1.2p1_1418F.1_g282240 Hydrangea macrophylla HOM05D003609 ORTHO05D004185 1.2e-20 104.8 59 76.3
SGA_v2.0_scaffold1G00238 Striga asiatica HOM05D054911 ORTHO05D400884 1.2e-20 104.8 120 49.2
FvH4_3g09700 Fragaria vesca HOM05D003609 ORTHO05D004185 1.6e-20 104.4 59 78.0
FAN11G0451 Fragaria x ananassa HOM05D003609 ORTHO05D004185 1.6e-20 104.4 59 78.0
FAN16G3689 Fragaria x ananassa HOM05D003609 ORTHO05D004185 1.6e-20 104.4 59 78.0
FAN25G3439 Fragaria x ananassa HOM05D003609 ORTHO05D004185 1.6e-20 104.4 59 78.0
Psat7g060520 Pisum sativum HOM05D003609 ORTHO05D004185 1.6e-20 104.4 59 76.3
PGR031G0855 Punica granatum HOM05D003609 ORTHO05D004185 1.6e-20 104.4 58 77.6
RcHm_v2.0_Chr5g0015371 Rosa chinensis HOM05D003609 ORTHO05D004185 1.6e-20 104.4 59 78.0
Cfa000850 Carpinus fangiana HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
AUR62042762 Chenopodium quinoa HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
Ciclev10014106m.g Citrus clementina HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
Haze_05753 Corylus avellana HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
Glyma.U032008 Glycine max HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
Lj2C325T8 Lonicera japonica HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
Lalb_Chr07g0185651 Lupinus albus HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
Manes.06G061000 Manihot esculenta HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
Phvul.002G252300 Phaseolus vulgaris HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
Hund21559 Selenicereus undatus HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
Sc17g0004700 Simmondsia chinensis HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
VMungo0251G1043 Vigna mungo HOM05D003609 ORTHO05D004185 3.6e-20 103.2 59 76.3
EL10Ac8g19595 Beta vulgaris HOM05D003609 ORTHO05D004185 4.7e-20 102.8 59 76.3
CAN.G1437.4 Capsicum annuum HOM05D003609 ORTHO05D004185 4.7e-20 102.8 58 75.9
CiPaw.10G086600 Carya illinoinensis HOM05D003609 ORTHO05D004185 4.7e-20 102.8 59 74.6
AUR62042468 Chenopodium quinoa HOM05D003609 ORTHO05D004185 4.7e-20 102.8 59 74.6
Nitab4.5_0000100g0230 Nicotiana tabacum HOM05D003609 ORTHO05D004185 4.7e-20 102.8 58 75.9
Nitab4.5_0001633g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 4.7e-20 102.8 58 75.9
Sabra16G0235700 Salix brachista HOM05D003609 ORTHO05D004185 4.7e-20 102.8 59 76.3
Solyc02g021650.3 Solanum lycopersicum HOM05D003609 ORTHO05D004185 4.7e-20 102.8 58 75.9
Sopen02g006220 Solanum pennellii HOM05D003609 ORTHO05D004185 4.7e-20 102.8 58 75.9
FAN21G1100 Fragaria x ananassa HOM05D003609 ORTHO05D004185 6.1e-20 102.4 59 76.3
MBI18_g10584_MAGBIO Magnolia biondii HOM05D003609 ORTHO05D004185 6.1e-20 102.4 58 77.6
Nn2g14648 Nelumbo nucifera HOM05D003609 ORTHO05D004185 6.1e-20 102.4 58 77.6
Nn7g36935 Nelumbo nucifera HOM05D003609 ORTHO05D004185 6.1e-20 102.4 58 77.6
QL07p044690 Quercus lobata HOM05D003609 ORTHO05D004185 6.1e-20 102.4 58 77.6
QL11p001509 Quercus lobata HOM05D003609 ORTHO05D004185 6.1e-20 102.4 58 77.6
TAR624G1151 Trochodendron aralioides HOM05D003609 ORTHO05D004185 6.1e-20 102.4 58 77.6
Atru.chr10.957 Acer truncatum HOM05D003609 ORTHO05D004185 8.0e-20 102.1 59 74.6
ClCG03G006390 Citrullus lanatus HOM05D003609 ORTHO05D004185 8.0e-20 102.1 58 77.6
MELO3C002793.2 Cucumis melo HOM05D003609 ORTHO05D004185 8.0e-20 102.1 58 77.6
CsaV3_1G037020 Cucumis sativus L. HOM05D003609 ORTHO05D004185 8.0e-20 102.1 58 77.6
Eucgr.H04822 Eucalyptus grandis HOM05D003609 ORTHO05D004185 8.0e-20 102.1 59 74.6
Os05g0592400 Oryza sativa ssp. japonica HOM05D003609 ORTHO05D004185 8.0e-20 102.1 58 77.6
GSVIVG01021587001 Vitis vinifera HOM05D003609 ORTHO05D004185 8.0e-20 102.1 59 74.6
Gohir.D02G238300 Gossypium hirsutum HOM05D003609 ORTHO05D004185 1.0e-19 101.7 59 74.6
Gorai.005G266800 Gossypium raimondii HOM05D003609 ORTHO05D004185 1.0e-19 101.7 59 74.6
Lj4g0015667 Lotus japonicus HOM05D003609 ORTHO05D004185 1.0e-19 101.7 59 74.6
Thecc.02G010900 Theobroma cacao HOM05D003609 ORTHO05D004185 1.0e-19 101.7 59 74.6
ATR0594G240 Amborella trichopoda HOM05D003609 ORTHO05D004185 1.4e-19 101.3 58 75.9
Duzib248G1499 Durio zibethinus HOM05D003609 ORTHO05D004185 1.4e-19 101.3 59 72.9
Aqoxy1G01653 Aquilegia oxysepala HOM05D003609 ORTHO05D004185 1.8e-19 100.9 58 75.9
CANSAT35G1843 Cannabis sativa HOM05D003609 ORTHO05D004185 1.8e-19 100.9 58 75.9
Potri.001G357900 Populus trichocarpa HOM05D003609 ORTHO05D004185 1.8e-19 100.9 59 74.6
Sed0022224 Sechium edule HOM05D003609 ORTHO05D004185 1.8e-19 100.9 58 75.9
HPP92_020750 Vanilla planifolia HOM05D003609 ORTHO05D004185 1.8e-19 100.9 58 75.9
Zm00001eb297320 Zea mays HOM05D003609 ORTHO05D004185 1.8e-19 100.9 58 75.9
Aa31LG9G9160 Aethionema arabicum HOM05D003609 ORTHO05D004185 2.3e-19 100.5 59 72.9
AT4G21100 Arabidopsis thaliana HOM05D003609 ORTHO05D004185 2.3e-19 100.5 59 72.9
Carub.0007s2033 Capsella rubella HOM05D003609 ORTHO05D004185 2.3e-19 100.5 59 72.9
Dinv32197 Davidia involucrata HOM05D003609 ORTHO05D004185 2.3e-19 100.5 58 77.6
Gohir.A03G216700 Gossypium hirsutum HOM05D003609 ORTHO05D004185 2.3e-19 100.5 59 72.9
Prupe.4G088300 Prunus persica HOM05D003609 ORTHO05D004185 2.3e-19 100.5 59 72.9
AagrBONN_evm.TU.Sc2ySwM_228.4774 Anthoceros agrestis HOM05D003609 ORTHO05D004185 3.0e-19 100.1 72 63.9
AT4G05420 Arabidopsis thaliana HOM05D003609 ORTHO05D004185 3.0e-19 100.1 59 72.9
CDE01G0431 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 3.0e-19 100.1 58 75.9
CDE01G0609 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 3.0e-19 100.1 58 75.9
CDE02G3832 Ceratophyllum demersum HOM05D003609 ORTHO05D004185 3.0e-19 100.1 58 75.9
Sp6g03670 Schrenkiella parvula HOM05D003609 ORTHO05D004185 3.0e-19 100.1 59 72.9
THA.LOC104812376 Tarenaya hassleriana HOM05D003609 ORTHO05D004185 3.0e-19 100.1 59 72.9
Zm00001eb345240 Zea mays HOM05D003609 ORTHO05D004185 3.0e-19 100.1 58 75.9
Ah.14g086230 Amaranthus hybridus HOM05D003609 ORTHO05D004185 4.0e-19 99.8 59 74.6
Lj4g0011653 Lotus japonicus HOM05D003609 ORTHO05D004185 4.0e-19 99.8 59 72.9
MD00G1109600 Malus domestica HOM05D003609 ORTHO05D004185 4.0e-19 99.8 59 71.2
MD05G1276000 Malus domestica HOM05D003609 ORTHO05D004185 4.0e-19 99.8 59 71.2
PSO541G5911 Papaver somniferum HOM05D003609 ORTHO05D004185 4.0e-19 99.8 58 74.1
TAR626G0448 Trochodendron aralioides HOM05D003609 ORTHO05D004185 4.0e-19 99.8 58 74.1
Duzib132G1150 Durio zibethinus HOM05D003609 ORTHO05D004185 5.2e-19 99.4 59 72.9
PSO675G5242 Papaver somniferum HOM05D003609 ORTHO05D004185 5.2e-19 99.4 58 72.4
AL6G49010 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 6.7e-19 99.0 59 71.2
AL7G33030 Arabidopsis lyrata HOM05D003609 ORTHO05D004185 6.7e-19 99.0 59 71.2
BcaC04g21393 Brassica carinata HOM05D003609 ORTHO05D004185 6.7e-19 99.0 59 71.2
A09p25340 Brassica napus HOM05D003609 ORTHO05D004185 6.7e-19 99.0 59 71.2
C09p32340 Brassica napus HOM05D003609 ORTHO05D004185 6.7e-19 99.0 59 71.2
BolC9t56079H Brassica oleracea HOM05D003609 ORTHO05D004185 6.7e-19 99.0 59 71.2
BraA09t38116Z Brassica rapa HOM05D003609 ORTHO05D004185 6.7e-19 99.0 59 71.2
Carub.0006s3333 Capsella rubella HOM05D003609 ORTHO05D004185 6.7e-19 99.0 59 71.2
Thhalv10028374m.g Eutrema salsugineum HOM05D003609 ORTHO05D004185 6.7e-19 99.0 59 71.2
Atru.chr10.954 Acer truncatum HOM05D003609 ORTHO05D004185 8.8e-19 98.6 59 71.2
SEGI_12709 Sequoiadendron giganteum HOM05D003609 ORTHO05D004185 1.5e-18 97.8 58 72.4
Atru.chr10.947 Acer truncatum HOM05D003609 ORTHO05D004185 2.0e-18 97.4 59 71.2
CARHR252160 Cardamine hirsuta HOM05D003609 ORTHO05D004185 2.0e-18 97.4 59 69.5
SMO119G0053 Selaginella moellendorffii HOM05D003609 ORTHO05D004185 2.6e-18 97.1 58 70.7
BcaC01g00713 Brassica carinata HOM05D003609 ORTHO05D004185 3.3e-18 96.7 59 69.5
BcaC01g00716 Brassica carinata HOM05D003609 ORTHO05D004185 3.3e-18 96.7 59 69.5
A08p15280 Brassica napus HOM05D003609 ORTHO05D004185 3.3e-18 96.7 59 69.5
C03p83520 Brassica napus HOM05D003609 ORTHO05D004185 3.3e-18 96.7 59 69.5
BolC3t20633H Brassica oleracea HOM05D003609 ORTHO05D004185 3.3e-18 96.7 59 69.5
BraA08t33506Z Brassica rapa HOM05D003609 ORTHO05D004185 3.3e-18 96.7 59 69.5
Duzib132G0117 Durio zibethinus HOM05D003609 ORTHO05D004185 9.7e-18 95.1 59 69.5
Thhalv10024273m.g Eutrema salsugineum HOM05D003609 ORTHO05D004185 9.7e-18 95.1 61 68.9
Mapoly0054s0064 Marchantia polymorpha HOM05D003609 ORTHO05D004185 9.7e-18 95.1 58 70.7
Pp3c15_18160 Physcomitrium patens HOM05D003609 ORTHO05D004185 9.7e-18 95.1 58 70.7
Pp3c9_22270 Physcomitrium patens HOM05D003609 ORTHO05D004185 2.2e-17 94.0 58 70.7
Sp7g19180 Schrenkiella parvula HOM05D003609 ORTHO05D004185 3.7e-17 93.2 59 67.8
CARHR227680 Cardamine hirsuta HOM05D003609 ORTHO05D004185 8.2e-17 92.0 59 67.8
Lj6g0025210 Lotus japonicus HOM05D003609 ORTHO05D004185 1.1e-16 91.7 58 69.0
Peaxi162Scf00155g01114 Petunia axillaris HOM05D003609 ORTHO05D004185 1.6e-15 87.8 58 67.2
Peaxi162Scf00213g01216 Petunia axillaris HOM05D003609 ORTHO05D004185 1.6e-15 87.8 58 67.2
CBR_g19725 Chara braunii HOM05D003609 ORTHO05D004185 1.3e-14 84.7 58 60.3
Peaxi162Scf00296g01317 Petunia axillaris HOM05D003609 ORTHO05D004185 7.2e-13 79.0 54 63.0
MCO15G425 Micromonas commoda HOM05D003609 ORTHO05D004185 2.7e-12 77.0 58 50.0
SGA_v2.0_scaffold1192G53861 Striga asiatica HOM05D054911 ORTHO05D401115 2.7e-12 77.0 141 38.3
Nitab4.5_0005101g0010 Nicotiana tabacum HOM05D003609 ORTHO05D004185 2.6e-10 70.5 60 55.0
PRCOL_00006815 Prasinoderma coloniale HOM05D003609 ORTHO05D004185 3.7e-09 66.6 58 44.8
CAN.G371.123 Capsicum annuum HOM05D003609 ORTHO05D004185 2.0e-07 60.8 61 44.3
Ca_17799_v3 Cicer arietinum L. HOM05D003609 ORTHO05D004185 2.7e-07 60.5 35 71.4
Haze_26269 Corylus avellana HOM05D003609 ORTHO05D004185 5.9e-07 59.3 55 43.6
SGA_v2.0_scaffold130G34210 Striga asiatica HOM05D030202 ORTHO05D404626 1.7e-06 57.8 109 33.0
CAN.G1126.16 Capsicum annuum HOM05D003609 ORTHO05D004185 3.8e-06 56.6 62 45.2
BcaC01g03282 Brassica carinata HOM05D003609 ORTHO05D004185 6.5e-06 55.8 56 46.4


User provided reference genes

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