Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 0.0e+00 1951.4 969 100.0
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 0.0e+00 1258.8 925 70.4
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 0.0e+00 1245.0 978 67.3
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 0.0e+00 1236.9 977 66.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 0.0e+00 1080.5 947 61.4
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 8.1e-284 980.7 988 55.8
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 2.6e-282 975.7 977 55.4
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 3.2e-280 968.8 1027 52.0
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 1.3e-278 963.4 991 53.3
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 3.0e-278 962.2 916 55.6
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 5.6e-277 958.0 994 53.6
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 6.2e-276 954.5 1033 51.9
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.5e-274 949.9 964 54.1
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 2.9e-273 945.7 1002 52.5
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 3.2e-272 942.2 1034 51.6
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.6e-271 939.9 978 53.7
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.1e-271 939.5 995 52.6
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.0e-271 937.9 774 62.0
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.3e-270 936.8 978 53.8
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 3.0e-270 935.6 989 53.8
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.7e-270 934.1 964 53.2
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 2.8e-268 929.1 995 51.9
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.8e-267 926.4 987 53.0
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 4.0e-267 925.2 973 52.8
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 2.0e-266 922.9 984 52.3
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 3.8e-265 918.7 1028 51.3
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.1e-264 917.1 1003 50.5
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 4.2e-264 915.2 783 59.9
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 5.4e-264 914.8 1028 51.3
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 2.1e-263 912.9 1021 51.8
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.5e-261 906.7 991 51.0
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 7.3e-261 904.4 999 51.5
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 3.6e-260 902.1 982 51.0
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.6e-260 902.1 988 52.7
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.0e-258 896.3 995 50.2
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.3e-257 893.6 1055 49.0
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.8e-257 892.1 1036 49.8
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 6.4e-257 891.3 991 50.1
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.1e-256 890.6 990 51.1
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.1e-256 890.6 1011 50.1
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.4e-256 890.2 980 49.6
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 3.2e-256 889.0 1013 50.0
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 3.2e-256 889.0 920 52.3
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 7.9e-255 884.4 984 50.5
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 1.0e-254 884.0 980 49.2
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 6.7e-254 881.3 987 50.9
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 4.3e-253 878.6 1004 49.8
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 2.4e-251 872.8 979 51.8
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 2.4e-251 872.8 1003 49.6
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 9.0e-251 870.9 982 50.0
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 9.0e-251 870.9 1025 50.1
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 9.0e-251 870.9 966 50.8
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 5.8e-250 868.2 987 50.2
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 4.9e-249 865.1 1013 48.1
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.4e-248 862.8 964 50.9
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 2.1e-247 859.8 996 49.4
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 4.6e-247 858.6 978 49.3
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 5.1e-246 855.1 1001 49.4
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.9e-245 853.2 979 49.1
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.6e-245 851.7 990 49.9
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.4e-243 846.3 978 49.0
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.6e-242 842.8 989 48.2
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 5.8e-242 841.6 1003 48.4
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 7.9e-239 831.2 976 48.5
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.8e-238 830.1 982 48.6
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 6.7e-238 828.2 1008 47.7
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 1.5e-237 827.0 1004 47.2
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.9e-237 826.6 978 48.1
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.8e-235 820.1 975 48.1
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 4.1e-235 818.9 988 47.2
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 4.1e-235 818.9 989 46.2
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 1.2e-234 817.4 988 47.5
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 7.2e-232 808.1 987 46.5
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.2e-231 807.4 1004 46.5
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.6e-231 807.0 989 47.7
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 7.9e-231 804.7 977 46.4
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 3.0e-230 802.7 984 45.8
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.1e-229 800.8 1032 45.3
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 4.5e-226 788.9 710 56.2
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.1e-224 784.3 996 46.2
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 4.4e-221 772.3 906 49.2
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.7e-217 760.4 842 50.6
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 9.4e-216 754.6 969 46.3
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 5.7e-213 745.3 989 45.2
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 8.0e-199 698.4 553 64.9
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.5e-197 694.1 581 62.3
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 1.1e-195 688.0 733 49.7
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.2e-191 674.5 1030 41.5
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.4e-190 671.0 596 57.7
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 6.3e-188 662.1 976 41.9
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.1e-184 651.4 832 46.4
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 2.3e-182 643.7 485 65.8
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.5e-176 624.4 1077 36.9
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.5e-176 623.6 994 39.9
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 5.2e-174 615.9 777 47.9
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 3.0e-169 600.1 773 46.8
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 5.1e-169 599.4 830 40.2
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 1.8e-166 590.9 495 63.2
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-159 568.2 974 38.4
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.6e-159 567.8 1180 34.4
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 7.8e-154 548.9 636 48.1
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-146 524.2 742 41.0
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-142 511.5 809 38.9
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.4e-134 485.0 427 60.7
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.4e-134 485.0 427 60.7
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-131 473.4 810 37.9
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-123 446.8 759 38.3
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.9e-122 442.6 508 46.1
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.0e-121 442.2 313 69.0
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-119 434.5 890 33.3
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 2.5e-115 421.0 274 72.3
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-113 414.5 654 39.0
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 4.2e-107 393.7 652 40.0
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 6.1e-106 389.8 370 54.6
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.4e-94 351.3 355 55.2
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 3.1e-94 350.9 490 44.7
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.8e-86 325.1 789 33.0
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-81 309.3 664 33.3
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 8.8e-81 306.2 489 38.4
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-80 305.4 823 28.8
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.3e-79 302.4 437 43.0
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.8e-70 271.9 402 39.3
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 8.9e-65 253.1 666 29.6
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 1.1e-62 246.1 406 40.1
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 1.7e-60 238.8 396 39.1
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.4e-57 229.2 157 69.4
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 5.1e-52 210.7 400 36.5
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 6.6e-52 210.3 267 43.8
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.6e-50 205.7 125 74.4
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.0e-44 184.9 188 49.5
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.1e-41 174.9 153 59.5
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.4e-40 171.4 111 75.7
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 5.4e-38 164.1 234 41.5
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.0e-36 159.8 549 28.1
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-35 155.6 157 49.0
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 3.6e-34 151.4 601 27.6
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.2e-34 150.6 184 48.9
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 3.1e-33 148.3 109 63.3
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.3e-31 142.9 341 31.1
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.3e-28 132.9 84 72.6
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.5e-27 129.4 283 29.7
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 1.5e-27 129.4 106 60.4
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 4.8e-26 124.4 86 65.1
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 4.5e-24 117.9 257 36.6
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.7e-21 108.6 83 67.5
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-20 106.7 461 23.2
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 3.0e-20 105.1 67 65.7
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.7e-15 89.4 164 37.8
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 2.7e-13 82.0 49 69.4
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 1.0e-12 80.1 109 37.6
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 2.3e-12 79.0 115 46.1
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.2e-08 66.6 171 35.7
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.4e-08 65.1 71 47.9
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 7.6e-08 63.9 112 36.6
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 7.2e-06 57.4 75 42.7
AT5G05130 Arabidopsis thaliana HOM05D000515 ORTHO05D005511 9.3e-06 57.0 145 28.3


User provided reference genes

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