Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 6.7e-81 303.9 148 100.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 1.2e-77 293.1 142 99.3
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 3.1e-70 268.5 142 90.8
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 6.9e-70 267.3 142 89.4
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 9.1e-70 266.9 142 88.7
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 6.7e-65 250.8 147 85.0
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 2.0e-64 249.2 142 85.2
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 2.0e-64 249.2 142 85.2
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 2.6e-64 248.8 142 83.1
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 7.4e-64 247.3 142 83.8
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.6e-61 239.6 147 81.0
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 2.2e-60 235.7 142 81.0
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 5.0e-60 234.6 142 79.6
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 1.2e-58 229.9 142 78.9
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 3.6e-58 228.4 142 78.2
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 3.6e-58 228.4 142 78.9
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 8.0e-58 227.3 111 99.1
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 8.8e-57 223.8 142 73.9
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 1.2e-56 223.4 142 77.5
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 1.5e-56 223.0 146 78.1
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 3.3e-56 221.9 142 75.4
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 3.3e-56 221.9 142 75.4
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 7.5e-56 220.7 142 76.1
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 7.5e-56 220.7 146 72.6
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 7.5e-56 220.7 148 75.7
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 1.3e-55 219.9 147 76.2
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 1.3e-55 219.9 147 76.2
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 1.3e-55 219.9 142 75.4
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 1.7e-55 219.5 142 75.4
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 2.2e-55 219.2 146 75.3
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 2.2e-55 219.2 142 75.4
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 2.8e-55 218.8 146 73.3
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 2.8e-55 218.8 143 77.6
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 2.8e-55 218.8 142 76.1
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 2.8e-55 218.8 142 73.9
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 3.7e-55 218.4 148 75.0
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 4.8e-55 218.0 142 75.4
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 4.8e-55 218.0 142 75.4
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 4.8e-55 218.0 142 73.2
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 6.3e-55 217.6 146 74.0
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 6.3e-55 217.6 142 74.6
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 6.3e-55 217.6 142 76.1
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 1.1e-54 216.9 142 75.4
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 1.1e-54 216.9 146 71.9
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 1.4e-54 216.5 142 74.6
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 1.8e-54 216.1 142 73.9
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 1.8e-54 216.1 142 72.5
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 2.4e-54 215.7 142 74.6
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 4.1e-54 214.9 142 73.2
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 7.0e-54 214.2 142 71.8
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 1.6e-53 213.0 142 70.4
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 2.0e-53 212.6 147 72.8
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 2.0e-53 212.6 142 71.1
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.0e-53 212.6 142 72.5
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 2.7e-53 212.2 142 72.5
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 2.7e-53 212.2 142 74.6
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 3.5e-53 211.8 156 67.9
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 4.5e-53 211.5 142 71.8
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 4.5e-53 211.5 142 73.2
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 5.9e-53 211.1 142 73.2
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 7.7e-53 210.7 145 72.4
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 1.3e-52 209.9 145 72.4
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 1.7e-52 209.5 142 71.8
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 1.7e-52 209.5 142 71.8
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 2.2e-52 209.1 142 69.7
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 3.8e-52 208.4 145 72.4
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 3.8e-52 208.4 145 72.4
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 3.8e-52 208.4 145 72.4
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 3.8e-52 208.4 145 72.4
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 3.8e-52 208.4 145 72.4
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 3.8e-52 208.4 142 73.9
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 5.0e-52 208.0 142 69.0
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 8.5e-52 207.2 146 68.5
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 1.1e-51 206.8 142 73.9
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 1.9e-51 206.1 146 68.5
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 2.5e-51 205.7 142 71.8
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.2e-51 205.3 142 73.2
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.2e-51 204.9 142 73.2
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 3.6e-50 201.8 146 67.1
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 6.1e-50 201.1 146 68.5
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.0e-49 200.3 142 73.2
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 3.0e-49 198.7 150 66.7
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 7.5e-48 194.1 142 67.6
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 4.8e-47 191.4 146 65.8
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 2.4e-46 189.1 145 68.3
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 3.1e-46 188.7 114 82.5
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 9.5e-43 177.2 113 77.0
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 6.1e-42 174.5 95 85.3
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 1.8e-41 172.9 142 61.3
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 2.3e-41 172.6 146 58.9
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 3.0e-41 172.2 115 76.5
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 9.8e-40 167.2 293 37.5
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 2.8e-39 165.6 105 75.2
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 8.3e-39 164.1 143 59.4
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 1.1e-38 163.7 142 57.7
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 1.2e-37 160.2 142 52.8
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 2.7e-37 159.1 125 65.6
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.1e-35 153.7 142 58.5
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 7.3e-35 151.0 136 55.9
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 8.3e-31 137.5 70 95.7
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 8.3e-31 137.5 145 49.0
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.1e-30 137.1 142 51.4
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 4.6e-29 131.7 74 85.1
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.7e-28 129.8 144 48.6
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 6.0e-21 104.8 75 65.3
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 1.8e-17 93.2 76 61.8
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.8e-17 91.3 73 67.1
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 9.5e-11 70.9 92 40.2
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.7e-07 60.1 42 71.4
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 1.9e-06 56.6 45 60.0


User provided reference genes

Program Settings