Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 2282.7 1157 100.0
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1738.8 1166 77.7
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1738.4 1182 78.1
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1724.5 1165 77.3
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1569.7 1164 69.2
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1568.1 1159 69.6
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1562.4 1157 69.7
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1560.8 1157 69.7
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1557.0 1016 77.7
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1541.9 1040 73.9
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1537.3 1165 68.6
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1536.2 1167 68.0
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1535.8 1158 67.9
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1530.8 1174 68.2
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1529.2 1166 68.3
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1526.5 1158 68.2
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1525.4 1160 67.9
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1522.3 1159 68.8
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1520.4 1166 68.3
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1520.4 1168 67.6
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1516.1 1184 68.1
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1515.0 1091 70.6
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1513.4 1166 67.5
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1511.9 1091 70.3
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1511.1 1091 70.3
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1509.6 1163 67.3
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1508.0 1164 68.0
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1501.5 1203 66.1
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1495.3 1161 66.1
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1492.2 1166 67.9
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1492.2 1096 68.8
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1491.5 1163 67.6
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1491.1 1157 66.7
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1488.8 1042 72.0
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1487.2 1040 71.5
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1487.2 1165 66.7
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1481.8 1206 65.4
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1481.1 1162 66.5
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1476.8 1160 66.0
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1474.5 1161 65.5
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1473.0 1159 67.3
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1473.0 1163 64.8
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1471.4 1091 68.7
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1471.4 1178 65.4
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1468.8 1169 65.2
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1468.4 1154 65.2
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1466.8 1159 66.8
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1466.4 1161 64.9
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1465.3 1233 63.8
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1463.7 1165 65.1
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1460.7 1161 64.8
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1457.2 1159 66.8
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1448.3 1162 65.1
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1446.8 1022 71.3
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1446.0 1162 65.1
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1441.0 1170 65.0
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1436.4 1164 63.6
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1430.2 1163 65.4
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1429.8 1182 64.0
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1429.8 1162 64.5
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1429.1 1162 64.5
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1423.7 1039 68.5
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1407.1 999 72.1
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1404.4 998 71.0
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1400.2 1164 64.2
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1394.4 1188 62.0
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1393.6 1036 70.3
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1392.5 1049 67.5
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1389.8 1312 58.8
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1389.8 1168 63.1
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1377.1 1056 70.8
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1376.7 1029 67.8
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1373.2 1108 63.1
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1364.7 1044 66.7
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1351.7 1114 61.9
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1350.1 1244 60.0
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1333.5 1164 61.3
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1276.2 1177 59.4
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1256.9 1029 61.2
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1238.8 919 70.1
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1226.8 1215 57.0
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1220.7 1176 57.4
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1211.1 1043 59.3
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1209.1 975 65.8
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1192.6 1125 55.4
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1185.2 1044 58.0
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1113.6 1119 51.4
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 3.5e-302 1042.0 1185 51.8
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 2.3e-293 1012.7 792 64.1
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 3.3e-292 1008.8 1052 50.5
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.1e-284 983.8 1059 50.7
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.0e-277 960.7 1050 48.8
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 3.9e-277 958.7 751 66.0
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 5.3e-266 921.8 1040 49.8
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 2.2e-235 820.1 701 61.9
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 7.2e-231 805.1 682 63.2
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.5e-228 797.3 625 65.3
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 1.2e-198 698.0 545 66.1
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 1.2e-196 691.4 518 69.5
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 6.0e-193 679.1 483 70.0
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 2.2e-187 660.6 632 58.1
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.9e-176 623.2 456 68.2
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 9.6e-175 618.6 410 73.4
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.2e-162 577.0 907 42.0
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 2.2e-158 564.3 671 50.1
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 7.4e-151 539.3 434 67.3
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 2.3e-144 517.7 438 61.4
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 4.5e-140 503.4 408 66.9
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 3.7e-134 483.8 326 74.2
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 2.0e-127 461.5 398 62.1
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.5e-122 444.5 285 76.5
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 1.0e-120 439.1 385 65.2
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.6e-119 434.5 357 66.4
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.3e-106 390.6 328 59.8
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 6.6e-99 366.7 216 79.6
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 5.8e-95 353.6 396 54.0
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 8.3e-94 349.7 241 71.4
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 3.8e-78 297.7 294 49.0
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 2.1e-76 292.0 142 99.3
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.9e-75 287.7 255 61.6
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 2.4e-56 225.3 183 63.9
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 2.4e-53 215.3 105 98.1
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.8e-51 209.1 209 56.9
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 8.4e-46 190.3 150 61.3
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 2.3e-43 182.2 149 63.8
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.4e-35 156.4 130 57.7
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 6.7e-35 154.1 147 53.7
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 1.5e-34 152.9 127 58.3
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-32 146.7 112 61.6
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 9.1e-32 143.7 97 70.1
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 5.9e-31 141.0 94 74.5
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 4.2e-29 134.8 170 45.3
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 6.7e-27 127.5 90 67.8
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 5.7e-26 124.4 99 61.6
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 6.3e-25 120.9 87 65.5
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.4e-24 119.8 108 52.8
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.9e-21 109.4 161 46.6
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.9e-21 109.4 161 46.6
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 5.5e-21 107.8 135 46.7
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 4.7e-20 104.8 75 65.3
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 2.3e-19 102.4 190 35.8
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.1e-16 93.6 69 62.3
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 5.9e-15 87.8 67 64.2
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.6e-12 79.7 119 43.7
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 1.4e-11 76.6 60 63.3
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 3.0e-11 75.5 54 68.5
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 5.7e-10 71.2 50 64.0
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 8.3e-09 67.4 55 58.2
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 1.2e-07 63.5 45 66.7
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 1.2e-07 63.5 45 66.7
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 1.2e-07 63.5 45 66.7
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 2.0e-07 62.8 45 66.7
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 5.9e-07 61.2 44 65.9
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 5.9e-07 61.2 35 74.3
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 1.7e-06 59.7 45 62.2


User provided reference genes

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