Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 2.3e-69 265.4 131 100.0
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.3e-64 248.8 133 94.0
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.3e-64 248.8 133 94.0
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 2.3e-64 248.8 133 93.2
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 6.6e-64 247.3 133 93.2
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.5e-63 246.1 133 93.2
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 3.3e-63 245.0 133 92.5
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 4.3e-63 244.6 133 91.7
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 7.3e-63 243.8 133 91.0
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 1.2e-62 243.0 129 90.7
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.2e-62 243.0 127 92.1
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 1.6e-62 242.7 133 91.7
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 3.6e-62 241.5 127 93.7
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 3.6e-62 241.5 129 90.7
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 3.6e-62 241.5 127 91.3
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 4.7e-62 241.1 127 91.3
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 4.7e-62 241.1 127 91.3
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 8.1e-62 240.4 127 90.6
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 8.1e-62 240.4 127 92.1
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 8.1e-62 240.4 127 92.1
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.4e-61 239.6 127 90.6
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 1.8e-61 239.2 127 89.8
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.8e-61 239.2 127 89.8
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.8e-61 239.2 127 89.8
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.8e-61 239.2 127 89.8
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 1.8e-61 239.2 127 89.8
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 2.3e-61 238.8 127 90.6
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 2.3e-61 238.8 127 89.0
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 2.3e-61 238.8 127 89.8
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 2.3e-61 238.8 127 89.8
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 3.1e-61 238.4 127 90.6
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 4.0e-61 238.0 126 92.1
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 4.0e-61 238.0 127 89.8
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 5.2e-61 237.7 127 89.8
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 6.8e-61 237.3 127 89.8
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.8e-61 237.3 125 89.6
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 6.8e-61 237.3 127 89.0
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 6.8e-61 237.3 127 89.8
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 8.9e-61 236.9 127 89.0
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 8.9e-61 236.9 127 89.8
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.2e-60 236.5 127 88.2
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.2e-60 236.5 127 89.0
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.5e-60 236.1 127 89.0
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.0e-60 235.7 127 89.0
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.6e-60 235.3 127 89.0
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 3.4e-60 235.0 127 89.0
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 3.4e-60 235.0 130 90.0
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 1.3e-59 233.0 127 88.2
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.9e-59 231.9 123 91.1
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 3.7e-59 231.5 127 88.2
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 3.7e-59 231.5 127 89.8
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.4e-59 230.7 127 88.2
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 6.4e-59 230.7 127 88.2
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 6.4e-59 230.7 126 88.1
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 8.3e-59 230.3 126 88.1
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.1e-58 229.9 127 87.4
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 2.4e-58 228.8 133 85.7
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.2e-58 228.4 127 86.6
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 4.1e-58 228.0 129 84.5
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 5.4e-58 227.6 133 84.2
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 5.4e-58 227.6 126 87.3
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 7.1e-58 227.3 127 86.6
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 9.2e-58 226.9 133 83.5
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.2e-57 226.5 133 83.5
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 2.1e-57 225.7 121 90.1
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.1e-57 225.7 127 85.0
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 3.5e-57 224.9 126 85.7
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.0e-56 223.4 150 74.7
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.0e-56 223.4 127 85.0
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 1.0e-56 223.4 127 85.0
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.3e-56 223.0 126 84.9
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 1.7e-56 222.6 132 83.3
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 2.3e-56 222.2 126 84.1
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 2.3e-56 222.2 127 84.3
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 2.3e-56 222.2 127 84.3
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 3.0e-56 221.9 127 83.5
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 3.0e-56 221.9 127 83.5
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 3.0e-56 221.9 127 83.5
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 3.0e-56 221.9 127 83.5
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 3.0e-56 221.9 127 84.3
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 3.0e-56 221.9 127 84.3
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 5.1e-56 221.1 127 84.3
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 5.1e-56 221.1 127 83.5
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 6.6e-56 220.7 127 84.3
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 6.6e-56 220.7 127 82.7
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 6.6e-56 220.7 127 83.5
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 6.6e-56 220.7 126 83.3
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 1.1e-55 219.9 127 83.5
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.1e-55 219.9 127 84.3
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.5e-55 219.5 127 82.7
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.9e-55 219.2 127 81.9
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.9e-55 219.2 127 83.5
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 3.3e-55 218.4 125 83.2
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 4.3e-55 218.0 127 83.5
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.2e-54 216.5 186 65.1
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.6e-54 216.1 127 82.7
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 2.0e-52 209.1 159 69.2
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 5.8e-52 207.6 159 68.6
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 3.7e-51 204.9 127 77.2
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 2.4e-50 202.2 127 76.4
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.5e-49 198.4 127 74.0
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 4.6e-49 198.0 131 80.2
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.7e-48 196.1 127 72.4
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.5e-47 193.0 127 70.9
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 2.5e-47 192.2 128 77.3
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 3.3e-47 191.8 191 55.5
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.1e-46 189.1 121 75.2
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 2.8e-46 188.7 127 78.0
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.8e-45 184.1 127 74.8
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 8.9e-45 183.7 123 69.1
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 2.6e-44 182.2 102 83.3
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 4.9e-43 177.9 126 63.5
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 6.4e-43 177.6 132 62.9
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.6e-41 172.9 125 66.4
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 1.0e-40 170.2 116 69.8
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 1.6e-38 162.9 126 60.3
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 4.8e-38 161.4 135 65.9
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.1e-37 160.2 88 94.3
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.0e-37 158.3 87 93.1
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.2e-36 156.8 88 90.9
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 4.4e-36 154.8 88 90.9
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 7.6e-36 154.1 79 88.6
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.9e-35 152.1 87 79.3
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.4e-34 149.1 88 81.8
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 5.4e-34 147.9 84 85.7
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.1e-34 147.5 87 78.2
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.7e-32 142.9 133 60.9
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 3.0e-32 142.1 71 93.0
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 7.4e-31 137.5 82 81.7
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 1.6e-30 136.3 82 80.5
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 1.6e-30 136.3 82 80.5
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.1e-30 136.0 75 82.7
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.8e-29 132.9 83 78.3
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.8e-29 132.9 81 80.2
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-28 130.2 89 75.3
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-28 129.4 68 85.3
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 1.3e-27 126.7 96 70.8
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.9e-27 125.6 76 81.6
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 5.1e-24 114.8 65 78.5
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.1e-18 97.1 84 60.7
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.9e-18 96.3 82 57.3
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 1.0e-16 90.5 46 87.0
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 1.9e-15 86.3 45 82.2
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.3e-15 85.1 72 56.9
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.4e-13 80.1 56 76.8
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 6.1e-09 64.7 41 68.3
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.8e-08 63.2 47 68.1
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 6.7e-08 61.2 42 71.4


User provided reference genes

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