Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.4e-224 783.9 913 100.0
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.3e-107 394.4 361 72.6
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 6.8e-99 366.3 262 83.2
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 9.8e-98 362.5 266 83.8
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 3.7e-97 360.5 211 87.7
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 6.3e-97 359.8 263 84.0
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 8.3e-97 359.4 212 85.8
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 1.8e-96 358.2 210 86.2
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 4.1e-96 357.1 263 78.3
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 5.4e-96 356.7 300 75.0
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 7.0e-96 356.3 262 84.7
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 2.0e-95 354.8 262 84.4
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 4.5e-95 353.6 212 86.3
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 7.8e-95 352.8 207 87.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.3e-94 352.1 211 87.7
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 2.3e-94 351.3 268 78.4
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 2.9e-94 350.9 212 84.0
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 3.9e-94 350.5 211 85.3
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 3.9e-94 350.5 212 84.0
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 6.6e-94 349.7 212 83.0
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 6.6e-94 349.7 212 84.4
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 8.6e-94 349.4 210 85.7
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 8.6e-94 349.4 210 84.8
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 2.5e-93 347.8 211 84.8
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 2.5e-93 347.8 211 82.9
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.3e-93 347.4 212 84.9
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 3.3e-93 347.4 211 84.4
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 3.3e-93 347.4 212 84.4
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 3.3e-93 347.4 209 84.2
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 5.6e-93 346.7 210 84.8
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 9.5e-93 345.9 211 84.8
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 9.5e-93 345.9 300 77.7
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 9.5e-93 345.9 211 83.4
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.2e-92 345.5 211 84.4
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.2e-92 345.5 211 83.4
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.6e-92 345.1 211 84.4
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.6e-92 345.1 207 84.5
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.6e-92 345.1 212 83.5
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 1.6e-92 345.1 211 82.9
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.1e-92 344.7 212 84.0
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 3.6e-92 344.0 210 84.8
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 3.6e-92 344.0 219 82.6
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 3.6e-92 344.0 298 75.2
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 3.6e-92 344.0 211 83.4
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 4.7e-92 343.6 212 82.5
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 4.7e-92 343.6 212 81.6
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 6.1e-92 343.2 212 84.4
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 8.0e-92 342.8 207 84.1
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.0e-91 342.4 209 82.3
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.4e-91 342.0 216 82.4
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.8e-91 341.7 211 84.8
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.8e-91 341.7 296 69.6
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 2.3e-91 341.3 212 84.0
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 2.3e-91 341.3 212 83.0
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 2.3e-91 341.3 264 79.5
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 3.1e-91 340.9 212 84.0
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 5.2e-91 340.1 209 82.8
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 1.2e-90 339.0 212 81.6
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.2e-90 339.0 307 75.9
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 1.2e-90 339.0 205 84.9
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 1.5e-90 338.6 208 84.6
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 1.5e-90 338.6 208 84.6
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.5e-90 338.6 211 83.4
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.0e-90 338.2 209 83.3
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 2.6e-90 337.8 212 83.5
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 2.6e-90 337.8 212 83.5
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.6e-90 337.8 209 81.3
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.6e-90 337.8 209 81.3
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 3.4e-90 337.4 209 82.8
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.4e-90 337.4 209 81.3
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.8e-90 336.7 209 81.3
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 5.8e-90 336.7 213 83.6
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 2.2e-89 334.7 209 82.3
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 4.9e-89 333.6 213 81.2
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.9e-89 333.6 209 80.4
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 6.4e-89 333.2 397 62.7
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.4e-88 332.0 194 88.1
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 3.2e-88 330.9 205 83.4
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 9.2e-88 329.3 215 79.5
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.6e-87 328.6 211 79.1
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.6e-87 328.6 211 79.1
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 1.9e-85 321.6 211 77.7
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 3.3e-85 320.9 202 81.7
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 4.0e-83 313.9 250 70.0
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 5.2e-83 313.5 210 76.7
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 6.8e-83 313.2 194 84.0
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.2e-82 312.4 210 76.2
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 4.4e-82 310.5 180 88.3
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.3e-81 308.9 207 76.3
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.4e-80 304.7 210 73.8
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 3.5e-79 300.8 210 72.4
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 1.0e-78 299.3 245 75.9
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.1e-77 295.8 196 79.1
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 7.3e-77 293.1 180 83.3
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 2.1e-76 291.6 212 70.3
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 4.7e-76 290.4 180 82.2
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 1.6e-71 275.4 223 67.7
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.3e-70 272.3 192 71.9
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.1e-69 269.2 197 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 3.3e-69 267.7 196 67.9
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.1e-67 262.7 196 68.4
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.4e-67 262.3 255 69.8
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.3e-62 245.7 186 71.0
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.7e-62 245.4 170 78.2
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 8.7e-62 243.0 157 80.9
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 8.7e-62 243.0 179 74.3
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 4.2e-56 224.2 195 62.6
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.4e-43 181.8 154 61.7
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.4e-32 146.0 92 78.3
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 1.9e-32 145.6 113 62.8
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.5e-29 135.2 103 73.8
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 2.8e-28 131.7 201 41.3
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.4e-27 128.6 77 84.4
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 5.0e-25 120.9 208 38.0
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 3.2e-24 118.2 75 82.7
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 3.6e-23 114.8 82 74.4
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.8e-22 112.5 74 77.0
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 4.3e-21 107.8 64 82.8
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 6.9e-19 100.5 180 38.9
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 2.6e-18 98.6 56 85.7
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.2e-17 95.5 107 49.5
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 6.5e-17 94.0 67 70.1
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 6.5e-17 94.0 168 38.1
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.5e-16 92.0 58 72.4
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 3.2e-16 91.7 61 70.5
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 9.4e-16 90.1 63 73.0
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 2.3e-14 85.5 138 36.2
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 2.3e-14 85.5 138 36.2
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 3.9e-14 84.7 159 38.4
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 4.4e-13 81.3 52 73.1
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 2.9e-09 68.6 57 70.2
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.9e-08 65.9 36 86.1
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 4.2e-08 64.7 35 85.7
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 5.5e-08 64.3 148 28.4


User provided reference genes

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