Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 9529.4 4848 100.0
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 7474.4 4836 78.9
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 6522.6 4841 69.0
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 6518.7 4841 68.9
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 6466.7 4855 68.7
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 6451.3 4909 67.9
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 6447.5 4851 68.1
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 6438.2 4848 68.5
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 6424.7 4851 68.0
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 6345.0 4851 67.5
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 6319.6 4848 67.6
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 6305.3 4864 66.8
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 6294.5 4916 66.5
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 6282.2 4854 66.9
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 6276.0 4866 66.9
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 6268.7 4862 66.8
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 6266.4 4853 66.7
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 6250.2 4850 66.6
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 6247.2 4854 66.6
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 6237.5 4850 66.6
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 6236.0 4839 67.1
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 6231.0 4855 66.8
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 6224.4 4857 66.2
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 6217.9 4727 67.7
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 6215.6 4849 66.3
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 6214.0 4839 66.5
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 6208.6 4839 66.9
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 6200.5 4847 66.2
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 6195.5 4859 66.4
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 6188.6 4852 66.1
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 6173.2 4853 66.0
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 6167.4 4855 65.9
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 6132.7 4853 65.0
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 6127.4 4868 66.3
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 6110.0 4742 66.5
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 6100.4 4863 64.7
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 6075.7 4857 65.0
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 6072.3 4865 64.9
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 6065.7 4851 64.6
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 6065.0 4839 65.1
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 6063.4 4861 65.1
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 6063.4 4861 65.1
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 6063.0 4870 64.8
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 6057.6 4860 64.8
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 6052.2 4907 64.0
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 6048.8 4834 65.1
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 6048.4 4854 65.0
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 6028.0 4869 64.5
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 6023.0 4863 64.5
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 6011.8 4852 64.8
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 6007.2 4861 64.5
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 5975.2 4856 64.4
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 5971.0 4895 63.9
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 5968.7 4860 63.8
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 5954.8 4862 64.1
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 5944.0 4858 63.5
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 5942.1 4858 63.6
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 5937.5 4859 63.4
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 5925.1 4854 63.8
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 5920.9 4861 63.7
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 5888.5 4861 63.6
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 5858.5 4852 63.9
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 5839.6 4860 63.0
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 5833.4 3834 77.1
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 5825.4 4866 62.9
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 5810.3 4858 62.8
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 5744.5 4848 61.8
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 5742.5 4842 61.9
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 5741.0 4846 61.9
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 5733.3 4845 61.8
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 5731.4 4849 61.9
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 5727.9 4840 61.7
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 5727.1 4859 61.6
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 5680.1 4848 61.3
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 5676.3 4848 61.3
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 5662.4 4657 63.5
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 5659.0 4874 60.9
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 5552.6 3881 73.2
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 5533.4 4862 60.7
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 5340.0 4885 59.5
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 5321.5 4873 58.1
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 5312.3 4861 58.3
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 5239.9 4859 57.7
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 5154.3 4813 56.9
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 5106.2 3718 71.1
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 5040.7 4862 55.2
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 4411.3 2941 75.5
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 4336.9 4985 49.0
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 4224.5 4489 53.0
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 4147.8 4837 49.4
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 4040.3 4721 48.7
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 4036.9 4541 49.4
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 3771.9 2424 78.8
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3613.9 2274 79.7
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 3606.6 3354 57.2
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3592.7 2274 79.4
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 0.0e+00 3565.0 2360 75.8
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 3135.9 2244 72.7
Glyma.08G252650 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 3125.9 2025 77.9
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 2946.4 2995 53.5
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 0.0e+00 2902.8 5797 35.7
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2865.9 2774 55.7
Cpa.g.sc14.238 Carica papaya HOM05D003926 ORTHO05D005273 0.0e+00 2821.6 1749 81.4
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 2727.6 2197 64.3
BcaC05g30340 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 2701.0 1769 77.4
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2694.8 2870 51.0
HPP92_020589 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 2664.4 1884 71.8
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 2637.1 2604 54.5
A05p45140 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2581.6 1660 78.3
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2506.1 2587 53.4
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 2473.4 2442 54.3
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 0.0e+00 2355.5 1505 78.5
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 2272.3 2719 47.6
arahy.Tifrunner.gnm1.ann1.DT5ZWB Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 1850.9 2104 49.5
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 1777.7 2412 43.9
Gohir.A07G178901 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1622.8 1922 47.2
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1619.0 2386 40.5
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 0.0e+00 1597.8 2900 37.6
Rhsim05G0129500 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 1234.6 1732 43.8
Atru.chr12.1304 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 1154.4 716 81.0
CDE01G0480 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1146.0 774 74.9
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 2.5e-309 1067.8 875 63.7
SMO361G0392 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 3.2e-304 1050.8 1059 56.0
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 8.9e-299 1032.7 1061 54.9
FAN09G1503 Fragaria x ananassa HOM05D003926 ORTHO05D005273 1.1e-285 989.2 1432 40.6
Psat4g179640 Pisum sativum HOM05D003926 ORTHO05D005273 2.3e-222 778.9 650 62.6
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 1.0e-206 726.9 4225 23.7
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 6.0e-202 711.1 535 69.3
Migut.H00583 Erythranthe guttata HOM05D003926 ORTHO05D005273 4.3e-200 704.9 385 88.8
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 6.4e-196 691.0 840 50.5
Peaxi162Scf00020g02344 Petunia axillaris HOM05D003926 ORTHO05D005273 4.1e-195 688.3 977 40.8
vmacro11260 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 1.2e-173 617.1 389 79.7
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 5.3e-118 432.2 830 38.1
Actinidia36271 Actinidia chinensis HOM05D003926 ORTHO05D005273 1.3e-95 357.8 261 72.0
Psat7g201760 Pisum sativum HOM05D003926 ORTHO05D005273 2.1e-77 297.4 268 59.3
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 4.1e-70 273.1 210 66.2
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.0e-68 268.5 203 65.5
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.0e-68 266.9 211 67.8
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.2e-66 261.5 210 63.3
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 3.0e-60 240.4 185 64.9
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.3e-58 235.0 211 60.2
Oeu047260.2 Olea europaea HOM05D003926 ORTHO05D005273 4.8e-58 233.0 335 44.8
Psat1g100800 Pisum sativum HOM05D003926 ORTHO05D005273 1.5e-56 228.0 222 55.4
Psat7g201680 Pisum sativum HOM05D003926 ORTHO05D005273 2.2e-55 224.2 268 50.0
CDE01G0511 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 3.7e-50 206.8 370 35.4
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 6.2e-50 206.1 135 74.8
Rhsim10G0100000 Rhododendron simsii HOM05D003926 ORTHO05D005273 3.0e-44 187.2 332 40.1
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 1.5e-43 184.9 637 26.8
Psat2g086480 Pisum sativum HOM05D003926 ORTHO05D005273 6.7e-36 159.5 120 65.0
Psat4g170760 Pisum sativum HOM05D003926 ORTHO05D005273 2.8e-34 154.1 103 69.9
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 5.9e-32 146.4 137 57.7
ATR0620G072 Amborella trichopoda HOM05D003059 ORTHO05D003414 4.3e-27 130.2 105 69.5
A05p29570 Brassica napus HOM05D003926 ORTHO05D010327 4.1e-25 123.6 306 30.4
ATR0332G115 Amborella trichopoda HOM05D003926 ORTHO05D005273 1.7e-23 118.2 115 62.6
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.7e-23 118.2 192 41.7
Actinidia36270 Actinidia chinensis HOM05D003926 ORTHO05D038129 4.8e-18 100.1 283 27.9
Eucgr.I02066 Eucalyptus grandis HOM05D003926 ORTHO05D018213 1.8e-17 98.2 131 45.8
BcaC05g29898 Brassica carinata HOM05D003926 ORTHO05D005273 9.1e-17 95.9 120 50.8
GSVIVG01005908001 Vitis vinifera HOM05D003926 ORTHO05D005273 6.5e-15 89.7 62 71.0
VMungo1383G2275 Vigna mungo HOM05D003926 ORTHO05D005273 4.2e-14 87.0 110 48.2
CAN.G8.6 Capsicum annuum HOM05D003926 ORTHO05D010611 7.2e-14 86.3 226 30.5
arahy.Tifrunner.gnm1.ann1.8KUK4W Arachis hypogaea HOM05D003926 ORTHO05D005273 8.0e-13 82.8 102 46.1
Hma1.2p1_0587F.1_g184120 Hydrangea macrophylla HOM05D003926 ORTHO05D005273 1.0e-12 82.4 51 70.6
Cpa.g.sc3603.1 Carica papaya HOM05D003926 ORTHO05D018213 1.1e-11 79.0 129 39.5
Dinv36991 Davidia involucrata HOM05D003926 ORTHO05D038129 4.4e-11 77.0 57 59.6
Psat4g018040 Pisum sativum HOM05D003926 ORTHO05D005273 4.4e-11 77.0 83 51.8
ATR0564G481 Amborella trichopoda HOM05D000537 ORTHO05D000415 8.2e-10 72.8 58 53.4
Psat7g240480 Pisum sativum HOM05D000029 ORTHO05D037355 9.1e-09 69.3 47 63.8
ATR0585G095 Amborella trichopoda HOM05D003926 ORTHO05D005273 1.2e-08 68.9 47 59.6
Nn1g06304 Nelumbo nucifera HOM05D003926 ORTHO05D018213 2.0e-08 68.2 121 33.9
CDE01G0142 Ceratophyllum demersum HOM05D003926 ORTHO05D018213 4.5e-08 67.0 129 32.6
Pp3c22_5030 Physcomitrium patens HOM05D000005 ORTHO05D000239 5.9e-08 66.6 61 45.9
COL.COLO4_10661 Corchorus olitorius HOM05D003926 ORTHO05D018213 1.0e-07 65.9 124 36.3
Psat3g160120 Pisum sativum HOM05D003926 ORTHO05D005273 1.0e-07 65.9 58 50.0
Psat7g160960 Pisum sativum HOM05D001399 ORTHO05D002785 8.5e-07 62.8 74 44.6
Psat2g102800 Pisum sativum HOM05D038693 ORTHO05D320111 1.9e-06 61.6 138 32.6
Sp7g04320 Schrenkiella parvula HOM05D003926 ORTHO05D005273 1.9e-06 61.6 82 39.0
Pp3c10_21680 Physcomitrium patens HOM05D000005 ORTHO05D000239 2.5e-06 61.2 65 41.5
MCO12G165 Micromonas commoda HOM05D002596 ORTHO05D002851 3.2e-06 60.8 61 47.5
Pp3c10_21693 Physcomitrium patens HOM05D000005 ORTHO05D000239 3.2e-06 60.8 67 46.3
Carub.0001s1645 Capsella rubella HOM05D000912 ORTHO05D001232 7.2e-06 59.7 134 31.3
Psat3g105800 Pisum sativum HOM05D000129 ORTHO05D007829 9.4e-06 59.3 51 49.0
QL10p058201 Quercus lobata HOM05D001813 ORTHO05D008124 9.4e-06 59.3 131 35.1


User provided reference genes

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