Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.8e-237 825.5 413 100.0
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 8.6e-102 374.8 433 49.2
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 8.6e-102 374.8 315 58.7
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 8.6e-102 374.8 319 58.6
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 1.5e-101 374.0 448 48.2
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.5e-101 374.0 315 58.7
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.3e-101 371.7 315 58.4
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 9.5e-101 371.3 378 53.2
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 6.2e-100 368.6 319 57.7
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 6.2e-100 368.6 319 58.0
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 8.1e-100 368.2 391 51.4
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.1e-99 367.9 432 48.6
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.4e-99 367.5 319 57.7
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 1.8e-99 367.1 320 58.4
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 1.8e-99 367.1 443 47.2
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 2.3e-99 366.7 319 57.7
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 4.0e-99 365.9 388 51.8
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 4.0e-99 365.9 400 52.0
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 8.9e-99 364.8 319 57.7
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.0e-98 363.6 320 57.2
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 2.6e-98 363.2 319 57.7
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 3.4e-98 362.8 319 55.8
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.4e-98 362.5 335 55.8
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 4.4e-98 362.5 320 57.2
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 5.8e-98 362.1 368 51.6
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 9.9e-98 361.3 452 46.9
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.7e-97 360.5 319 57.4
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.7e-97 360.5 322 57.5
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 2.9e-97 359.8 335 54.6
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 3.7e-97 359.4 400 50.0
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 3.7e-97 359.4 436 47.9
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 3.7e-97 359.4 321 57.0
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 4.9e-97 359.0 332 56.0
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 8.4e-97 358.2 400 48.8
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 8.4e-97 358.2 318 57.2
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 8.4e-97 358.2 481 44.3
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 1.1e-96 357.8 397 49.4
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.4e-96 357.5 440 48.2
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.4e-96 357.5 321 56.7
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 4.1e-96 355.9 429 48.3
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 5.4e-96 355.5 398 49.0
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 7.1e-96 355.1 417 47.2
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.2e-95 354.4 322 56.8
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 4.6e-95 352.4 322 56.5
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 4.6e-95 352.4 303 57.8
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 6.0e-95 352.1 403 48.6
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 7.8e-95 351.7 414 47.6
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.0e-94 351.3 322 55.6
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.3e-94 350.9 452 45.8
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.7e-94 350.5 320 55.6
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.7e-94 350.5 340 53.5
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 2.3e-94 350.1 322 55.6
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.0e-94 349.7 429 46.9
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 3.0e-94 349.7 399 49.1
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.1e-94 349.0 318 55.7
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 6.6e-94 348.6 437 45.5
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.5e-93 347.4 318 55.7
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.5e-93 346.7 437 47.4
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.5e-93 346.7 318 54.1
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 4.3e-93 345.9 401 48.4
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 5.6e-93 345.5 319 55.5
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 5.6e-93 345.5 404 47.3
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 9.6e-93 344.7 318 55.3
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.6e-92 344.0 463 45.6
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.6e-92 344.0 318 53.8
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 4.7e-92 342.4 450 44.9
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 6.2e-92 342.0 395 48.6
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 8.1e-92 341.7 319 53.6
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 8.1e-92 341.7 321 54.5
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.1e-91 341.3 308 55.8
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.4e-91 340.9 317 53.6
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.4e-91 340.9 304 56.2
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 8.9e-91 338.2 309 54.0
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.0e-90 337.0 414 45.7
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 5.8e-90 335.5 321 53.6
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 1.3e-89 334.3 323 52.9
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.7e-89 334.0 351 50.4
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 2.2e-89 333.6 422 44.8
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 2.2e-89 333.6 379 49.1
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 6.4e-89 332.0 379 48.8
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.9e-88 330.5 416 44.5
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 1.9e-88 330.5 321 53.0
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.4e-88 330.1 410 46.1
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 4.2e-88 329.3 408 46.3
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 5.4e-88 328.9 490 41.2
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 5.4e-88 328.9 321 53.0
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 9.3e-88 328.2 324 52.5
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 9.3e-88 328.2 324 52.5
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 2.1e-87 327.0 327 52.0
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 2.1e-87 327.0 327 52.0
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 2.1e-87 327.0 327 52.0
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.1e-87 327.0 305 52.8
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 2.7e-87 326.6 268 60.1
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 3.5e-87 326.2 430 44.9
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 3.5e-87 326.2 490 41.2
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 3.5e-87 326.2 431 44.5
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 4.6e-87 325.9 322 52.8
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 4.6e-87 325.9 397 46.9
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 6.0e-87 325.5 404 46.3
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 7.8e-87 325.1 443 44.0
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 7.8e-87 325.1 438 44.1
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.7e-86 323.9 321 53.0
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 3.0e-86 323.2 393 45.8
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.7e-86 321.6 321 49.5
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 3.3e-85 319.7 396 46.2
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 2.1e-84 317.0 300 52.7
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 3.6e-84 316.2 392 46.7
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 1.4e-83 314.3 324 50.0
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 6.9e-83 312.0 347 48.7
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 6.9e-83 312.0 467 42.6
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 9.0e-83 311.6 256 60.5
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 3.8e-81 306.2 335 50.7
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 8.4e-81 305.1 347 47.0
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 4.2e-80 302.8 346 46.8
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 4.2e-80 302.8 450 41.3
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 3.0e-78 296.6 315 49.2
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.1e-77 294.7 395 42.8
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 6.2e-76 288.9 368 44.8
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 3.1e-75 286.6 319 47.6
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 2.0e-74 283.9 249 56.6
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 3.2e-72 276.6 319 45.5
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 9.3e-72 275.0 250 56.4
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 9.3e-72 275.0 276 50.7
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.2e-71 274.6 484 35.5
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.1e-67 261.5 347 45.0
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 3.1e-67 260.0 584 35.4
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.0e-66 257.3 348 40.5
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.9e-64 250.8 237 54.4
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 7.1e-64 248.8 426 39.4
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.1e-63 247.3 354 39.5
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 6.0e-63 245.7 304 46.1
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 6.7e-62 242.3 365 38.9
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.1e-59 235.0 334 38.9
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.6e-58 230.3 181 60.8
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 2.7e-55 220.3 308 43.5
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.0e-54 218.4 169 60.9
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 6.7e-54 215.7 256 47.7
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 2.0e-50 204.1 377 35.5
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.2e-49 200.7 181 52.5
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 9.7e-45 185.3 260 42.7
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 2.6e-42 177.2 185 48.6
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 5.5e-40 169.5 375 32.5
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.1e-37 161.8 193 43.5
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 3.7e-36 156.8 190 41.6
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 1.3e-33 148.3 158 49.4
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 2.9e-33 147.1 275 34.9
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 7.2e-32 142.5 97 68.0
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.3e-28 131.7 230 36.5
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.8e-28 129.8 149 48.3
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.2e-26 125.2 325 32.6
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.6e-26 124.8 146 47.3
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 1.3e-25 121.7 85 67.1
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.7e-25 121.3 274 31.8
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 5.7e-21 106.3 118 46.6
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 3.8e-17 93.6 111 44.1
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 1.7e-12 78.2 62 58.1
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 2.8e-12 77.4 114 38.6
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 8.3e-12 75.9 70 50.0
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 5.4e-11 73.2 58 60.3
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.2e-10 72.0 60 51.7
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.0e-10 71.2 66 59.1
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 7.8e-10 69.3 66 53.0
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 5.0e-09 66.6 44 65.9
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.3e-08 63.5 121 37.2
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 1.8e-06 58.2 54 50.0
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 3.0e-06 57.4 47 53.2
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.0e-06 57.4 49 63.3


User provided reference genes

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