Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 1.2e-115 419.9 218 100.0
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 2.3e-109 399.1 218 94.5
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 1.5e-108 396.4 218 92.7
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 6.1e-107 391.0 218 90.8
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 6.8e-106 387.5 218 90.8
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 6.8e-106 387.5 217 90.3
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 6.8e-106 387.5 218 91.7
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 1.5e-105 386.3 218 89.9
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 2.6e-105 385.6 218 90.4
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 7.5e-105 384.0 218 89.9
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 9.8e-105 383.6 215 90.2
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 2.2e-104 382.5 216 91.2
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 2.9e-104 382.1 218 89.4
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 8.3e-104 380.6 217 89.9
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 1.1e-103 380.2 215 90.2
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 3.2e-103 378.6 218 89.4
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 3.2e-103 378.6 215 88.8
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 3.2e-103 378.6 215 88.8
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 7.0e-103 377.5 215 88.4
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 9.2e-103 377.1 218 87.2
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 3.5e-102 375.2 218 89.0
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 5.9e-102 374.4 211 90.5
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 2.3e-101 372.5 218 85.8
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 2.3e-101 372.5 218 85.8
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 2.3e-101 372.5 218 86.2
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 3.9e-101 371.7 218 86.7
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 1.1e-100 370.2 218 86.2
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 1.5e-100 369.8 218 87.6
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.5e-100 369.8 218 84.9
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 1.9e-100 369.4 218 85.8
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 5.6e-100 367.9 218 85.3
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 9.5e-100 367.1 218 86.2
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.2e-99 366.7 218 84.4
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 1.6e-99 366.3 218 85.8
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 2.8e-99 365.5 218 85.8
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 2.8e-99 365.5 218 85.8
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 2.8e-99 365.5 218 85.8
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 2.8e-99 365.5 218 85.8
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.8e-99 365.5 218 86.7
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.7e-99 364.8 211 87.7
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 4.7e-99 364.8 218 85.3
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 8.0e-99 364.0 206 90.3
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.0e-98 363.6 220 86.4
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.8e-98 362.8 218 84.4
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.8e-98 362.8 218 84.4
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.3e-98 362.5 218 84.4
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 3.1e-98 362.1 218 83.9
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 3.1e-98 362.1 218 85.3
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 3.1e-98 362.1 218 84.4
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 3.1e-98 362.1 217 84.8
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 3.1e-98 362.1 215 88.4
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.0e-98 361.7 218 84.4
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 6.8e-98 360.9 218 83.9
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 6.8e-98 360.9 217 84.3
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.2e-97 360.1 218 83.5
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 2.0e-97 359.4 218 83.5
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 2.6e-97 359.0 211 84.8
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 2.6e-97 359.0 218 83.5
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 3.4e-97 358.6 218 82.1
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 3.4e-97 358.6 207 88.4
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 5.8e-97 357.8 218 83.9
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 5.8e-97 357.8 218 84.4
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 7.5e-97 357.5 217 84.3
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 7.5e-97 357.5 218 83.9
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 9.8e-97 357.1 214 85.5
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 1.7e-96 356.3 218 82.6
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.7e-96 356.3 218 83.0
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.2e-96 355.9 217 83.9
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 3.7e-96 355.1 218 81.7
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.1e-95 353.6 218 81.2
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 1.9e-95 352.8 223 81.6
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 1.9e-95 352.8 207 86.5
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 9.2e-95 350.5 294 67.7
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 3.5e-94 348.6 219 80.8
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 4.6e-94 348.2 207 87.0
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 6.0e-94 347.8 219 80.8
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 6.0e-94 347.8 219 80.8
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 6.0e-94 347.8 218 79.4
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 7.8e-94 347.4 219 80.8
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 7.8e-94 347.4 219 80.8
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 7.8e-94 347.4 218 83.0
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 1.0e-93 347.1 218 80.7
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 1.3e-93 346.7 207 86.5
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 1.7e-93 346.3 220 81.8
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 1.7e-93 346.3 221 80.5
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 2.3e-93 345.9 218 80.7
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 2.3e-93 345.9 204 88.2
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 6.6e-93 344.4 219 80.4
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.9e-92 342.8 209 83.7
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.6e-92 341.3 203 84.7
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 7.3e-92 340.9 218 79.4
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 7.3e-92 340.9 202 85.6
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.6e-91 339.7 218 79.8
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 2.8e-91 339.0 215 80.5
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 8.1e-91 337.4 215 80.0
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 5.2e-90 334.7 215 79.5
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.5e-89 333.2 218 78.9
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 7.5e-89 330.9 211 80.1
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 9.8e-89 330.5 221 76.9
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 5.4e-87 324.7 196 85.2
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 7.1e-87 324.3 218 75.2
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 2.7e-86 322.4 215 79.5
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 1.7e-85 319.7 277 61.4
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 2.5e-84 315.8 202 76.2
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 4.3e-84 315.1 211 72.5
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 2.1e-83 312.8 203 74.9
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 1.1e-82 310.5 185 84.9
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 4.9e-80 301.6 174 87.4
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 2.4e-79 299.3 185 84.9
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.6e-75 286.6 173 83.8
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 2.1e-75 286.2 164 87.2
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 8.1e-75 284.3 201 74.6
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.4e-71 273.5 221 58.8
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 7.1e-71 271.2 210 65.2
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 2.7e-70 269.2 218 71.6
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.6e-67 260.0 210 62.4
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 4.6e-62 241.9 145 86.9
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 2.3e-61 239.6 212 62.7
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 5.1e-61 238.4 210 58.6
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 8.7e-61 237.7 139 84.2
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 9.0e-58 227.6 145 82.8
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 1.7e-56 223.4 176 71.0
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 3.9e-53 212.2 148 79.7
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 7.4e-52 208.0 215 56.3
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 1.7e-48 196.8 119 85.7
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-47 194.1 174 62.6
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 1.0e-45 187.6 110 81.8
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.8e-42 176.8 162 55.6
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 2.5e-39 166.4 215 49.3
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 2.8e-35 152.9 91 90.1
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.4e-34 150.6 84 94.0
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 2.0e-25 120.2 81 79.0
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 5.3e-18 95.5 56 82.1
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 9.4e-15 84.7 45 86.7
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 9.4e-15 84.7 66 69.7
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 2.7e-14 83.2 53 71.7
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.6e-14 82.8 46 84.8
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 2.4e-10 70.1 87 48.3
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 4.2e-07 59.3 34 82.4
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 1.2e-06 57.8 34 82.4


User provided reference genes

Program Settings