Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 1.5e-218 762.7 417 100.0
SGA_v2.0_scaffold95G28748 Striga asiatica HOM05D003719 ORTHO05D004116 4.8e-108 395.6 412 60.9
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 7.9e-95 351.7 450 50.4
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 1.6e-87 327.4 444 52.9
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 2.0e-61 240.7 361 44.3
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 1.3e-60 238.0 364 43.4
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.3e-54 217.2 377 42.2
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 4.4e-53 213.0 458 40.0
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 1.6e-50 204.5 397 40.6
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.3e-49 201.4 454 36.3
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 3.8e-49 199.9 420 37.9
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 6.5e-49 199.1 345 41.4
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 8.6e-49 198.7 175 61.7
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 5.2e-46 189.5 365 41.1
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 5.7e-45 186.0 365 38.9
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.3e-44 184.9 410 37.8
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 1.4e-43 181.4 371 39.4
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 4.1e-43 179.9 357 39.8
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 2.0e-42 177.6 373 35.7
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 3.5e-42 176.8 358 39.1
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 1.5e-40 171.4 442 34.2
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 2.5e-40 170.6 374 36.9
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 5.6e-40 169.5 432 34.3
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 2.8e-39 167.2 400 35.8
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 8.0e-39 165.6 371 38.3
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 4.0e-38 163.3 350 39.4
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 6.8e-38 162.5 368 37.0
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 1.2e-37 161.8 375 37.9
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 2.6e-37 160.6 358 37.7
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 4.4e-37 159.8 354 36.7
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 7.5e-37 159.1 368 35.3
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 9.8e-37 158.7 370 38.9
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 9.8e-37 158.7 350 37.7
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 1.3e-36 158.3 367 35.4
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 1.3e-36 158.3 367 35.4
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 1.3e-36 158.3 374 36.1
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 1.3e-36 158.3 362 36.2
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 2.2e-36 157.5 367 36.0
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 4.9e-36 156.4 372 34.9
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 4.9e-36 156.4 359 35.1
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 3.2e-35 153.7 367 36.0
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 7.0e-35 152.5 373 35.4
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 7.0e-35 152.5 409 35.0
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 9.2e-35 152.1 383 36.8
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 3.5e-34 150.2 352 36.9
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 7.8e-34 149.1 418 34.4
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 1.0e-33 148.7 298 38.6
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 1.0e-33 148.7 368 35.1
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 1.3e-33 148.3 399 33.6
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 1.3e-33 148.3 362 34.0
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 3.9e-33 146.7 370 35.9
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 3.9e-33 146.7 403 35.7
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 1.1e-32 145.2 356 35.7
vmacro13601 Vaccinium macrocarpon HOM05D003719 ORTHO05D004116 1.5e-32 144.8 301 38.2
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 1.9e-32 144.4 368 33.2
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 3.3e-32 143.7 424 34.0
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 4.3e-32 143.3 349 36.1
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 5.6e-32 142.9 361 35.2
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 7.3e-32 142.5 412 31.6
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.2e-31 141.7 437 34.1
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 1.6e-31 141.4 463 32.0
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.1e-31 141.0 377 34.2
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 3.6e-31 140.2 355 32.7
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 3.6e-31 140.2 357 35.0
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 8.0e-31 139.0 348 35.6
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 1.1e-30 138.7 341 34.0
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 1.8e-30 137.9 379 34.6
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 1.8e-30 137.9 368 34.5
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 2.0e-29 134.4 308 36.7
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 2.0e-29 134.4 367 35.1
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 3.4e-29 133.7 387 34.1
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 5.8e-29 132.9 369 36.0
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 2.2e-28 131.0 345 32.2
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 2.2e-28 131.0 354 32.8
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 6.4e-28 129.4 361 31.0
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 8.3e-28 129.0 369 34.4
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 8.3e-28 129.0 418 31.6
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 1.4e-27 128.3 350 33.7
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 1.9e-27 127.9 360 32.8
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 3.2e-27 127.1 328 31.7
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 4.1e-27 126.7 432 31.9
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 5.4e-27 126.3 399 33.1
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 7.0e-27 125.9 348 32.2
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 1.6e-26 124.8 372 32.3
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 2.0e-26 124.4 361 33.8
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 2.0e-26 124.4 369 33.1
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 3.5e-26 123.6 367 33.0
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 3.5e-26 123.6 361 34.3
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 4.6e-26 123.2 364 31.0
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 4.6e-26 123.2 383 35.0
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 1.7e-25 121.3 406 32.0
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 2.3e-25 120.9 406 32.0
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 6.6e-25 119.4 127 51.2
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 1.5e-24 118.2 382 30.6
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 3.3e-24 117.1 415 30.8
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 5.6e-24 116.3 416 32.2
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 5.6e-24 116.3 142 47.9
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 1.2e-23 115.2 349 33.2
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 3.6e-23 113.6 361 29.4
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 3.6e-23 113.6 419 32.0
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 3.6e-23 113.6 361 29.4
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 6.2e-23 112.8 369 29.3
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 6.2e-23 112.8 353 32.0
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 1.8e-22 111.3 330 33.6
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.8e-22 111.3 211 42.7
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 2.3e-22 110.9 409 30.3
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 4.0e-22 110.2 355 29.6
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 4.0e-22 110.2 355 29.6
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 4.0e-22 110.2 355 29.6
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 4.0e-22 110.2 422 30.1
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 1.2e-21 108.6 354 31.9
Hma1.2p1_0462F.1_g158020 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.5e-21 108.2 265 34.7
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 2.6e-21 107.5 430 29.5
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 3.4e-21 107.1 322 33.5
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 3.4e-21 107.1 123 48.0
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 4.4e-21 106.7 352 31.5
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 1.7e-20 104.8 385 30.1
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 1.7e-20 104.8 405 29.6
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 2.9e-20 104.0 373 31.9
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 3.7e-20 103.6 343 30.9
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 3.7e-20 103.6 394 27.7
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 2.4e-19 100.9 417 30.5
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 2.4e-19 100.9 356 29.8
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 5.4e-19 99.8 331 29.0
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 2.1e-18 97.8 335 32.5
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 7.8e-18 95.9 155 43.2
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 1.7e-17 94.7 367 29.2
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 2.3e-17 94.4 359 30.9
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 3.0e-17 94.0 511 26.8
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 5.1e-17 93.2 390 29.5
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 6.6e-17 92.8 391 30.7
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 3.3e-16 90.5 390 28.2
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 1.2e-15 88.6 360 29.2
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 2.1e-15 87.8 348 27.0
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 4.7e-15 86.7 171 38.0
arahy.Tifrunner.gnm1.ann1.E07VAV Arachis hypogaea HOM05D003719 ORTHO05D004116 1.1e-14 85.5 333 29.7
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 1.4e-14 85.1 136 43.4
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 5.2e-14 83.2 393 29.0
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 8.9e-14 82.4 154 38.3
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 1.7e-12 78.2 281 30.2
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 4.9e-12 76.6 345 26.7
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 6.4e-12 76.3 61 59.0
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 1.9e-11 74.7 63 58.7
FAN01G0740 Fragaria x ananassa HOM05D003719 ORTHO05D004116 5.4e-11 73.2 62 56.5
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 9.2e-11 72.4 172 30.8
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 3.5e-10 70.5 144 31.9
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 3.5e-10 70.5 144 31.9
AUR62014507 Chenopodium quinoa HOM05D003719 ORTHO05D004116 3.5e-10 70.5 268 30.2
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 3.5e-10 70.5 399 25.3
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 4.6e-10 70.1 188 30.3
CAN.G1612.6 Capsicum annuum HOM05D003719 ORTHO05D004116 1.7e-09 68.2 69 46.4
Ca_15283_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 5.1e-09 66.6 125 37.6
Ca_15419_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 5.1e-09 66.6 125 37.6
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 8.7e-09 65.9 45 71.1
CAN.G1260.1 Capsicum annuum HOM05D003719 ORTHO05D004116 2.5e-08 64.3 57 52.6
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 4.3e-08 63.5 315 27.9
Ah.05g177090 Amaranthus hybridus HOM05D000308 ORTHO05D005285 9.6e-08 62.4 91 40.7
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 2.8e-07 60.8 57 54.4
C03p09860 Brassica napus HOM05D003719 ORTHO05D004116 3.6e-07 60.5 392 24.5
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 3.6e-07 60.5 405 25.2
SHI15577 Sapria himalayana HOM05D003719 ORTHO05D004116 9.0e-06 55.8 31 77.4


User provided reference genes

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