Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 6.2e-202 707.2 350 100.0
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 1.9e-171 605.9 352 85.5
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 4.5e-168 594.7 348 83.9
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 5.1e-164 581.3 346 82.4
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 1.3e-162 576.6 351 82.1
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 8.8e-156 553.9 351 76.9
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.2e-152 543.5 329 79.3
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 2.0e-152 542.7 350 75.1
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 2.0e-152 542.7 347 76.4
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 4.5e-152 541.6 348 76.1
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.0e-151 540.4 349 76.5
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.0e-151 540.4 349 76.5
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 1.7e-151 539.7 329 79.0
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.2e-151 539.3 349 76.2
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 2.9e-151 538.9 348 76.1
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 2.9e-151 538.9 341 76.2
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 3.8e-151 538.5 339 77.3
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 6.5e-151 537.7 342 75.7
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.1e-150 537.0 323 79.3
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 1.5e-150 536.6 328 78.7
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 2.5e-150 535.8 333 78.4
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 5.5e-150 534.6 342 76.3
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 5.5e-150 534.6 325 80.3
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 7.2e-150 534.3 334 77.2
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 7.2e-150 534.3 330 78.2
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 1.2e-149 533.5 324 79.3
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 2.1e-149 532.7 348 75.3
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 3.6e-149 531.9 326 79.4
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 3.6e-149 531.9 348 76.1
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 4.7e-149 531.6 322 80.4
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 8.0e-149 530.8 322 79.5
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 2.3e-148 529.3 325 79.4
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 3.0e-148 528.9 327 78.6
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 4.0e-148 528.5 326 79.1
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 5.2e-148 528.1 350 74.9
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 5.2e-148 528.1 324 79.3
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 8.8e-148 527.3 330 77.9
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.2e-147 526.9 321 79.8
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 1.2e-147 526.9 325 79.1
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.5e-147 526.6 348 75.3
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.5e-147 526.6 326 77.6
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 1.5e-147 526.6 318 79.2
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.6e-147 525.8 348 74.1
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 3.3e-147 525.4 324 79.6
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 3.3e-147 525.4 342 74.9
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 3.3e-147 525.4 345 76.5
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 4.4e-147 525.0 332 76.8
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 1.3e-146 523.5 332 76.2
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 1.7e-146 523.1 346 75.7
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 1.7e-146 523.1 335 78.5
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 2.2e-146 522.7 326 77.6
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 2.2e-146 522.7 334 77.8
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.2e-146 522.7 334 77.8
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 2.8e-146 522.3 327 77.7
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 2.8e-146 522.3 353 73.9
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 3.7e-146 521.9 326 75.8
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 4.8e-146 521.5 352 73.0
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 9.1e-145 517.3 348 73.0
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 9.1e-145 517.3 336 77.7
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 1.2e-144 516.9 350 72.9
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 2.7e-144 515.8 327 76.8
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 2.7e-144 515.8 343 73.5
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 5.9e-144 514.6 336 77.7
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 1.0e-143 513.8 322 76.7
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 1.3e-143 513.5 344 73.0
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 2.9e-143 512.3 325 77.2
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.9e-142 509.6 345 72.8
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.2e-142 508.4 328 77.1
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 5.5e-142 508.1 318 76.4
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 1.2e-141 506.9 329 73.3
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 1.2e-141 506.9 327 75.8
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 2.1e-141 506.1 329 74.5
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 2.7e-141 505.8 318 76.1
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 8.0e-141 504.2 327 74.9
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.0e-140 503.8 329 74.5
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 3.0e-140 502.3 324 74.7
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 4.0e-140 501.9 330 74.2
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 4.0e-140 501.9 325 74.8
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 1.2e-139 500.4 328 74.4
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.5e-139 500.0 341 70.4
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 2.6e-139 499.2 343 71.1
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 3.4e-139 498.8 328 74.1
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 3.7e-138 495.4 322 74.8
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 3.7e-138 495.4 342 72.2
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 4.8e-138 495.0 342 72.2
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 6.3e-138 494.6 328 73.8
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 6.3e-138 494.6 349 70.2
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.4e-137 493.4 310 78.7
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 4.1e-137 491.9 324 74.1
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 1.6e-136 490.0 343 70.6
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 1.6e-136 490.0 363 71.3
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 3.8e-135 485.3 349 70.8
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 6.5e-135 484.6 310 77.7
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.5e-134 483.4 302 77.8
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 6.1e-133 478.0 351 67.2
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 1.4e-132 476.9 290 80.0
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 6.8e-132 474.6 290 79.0
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 1.9e-126 456.4 328 68.9
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 2.1e-125 453.0 289 76.1
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 1.7e-122 443.4 357 64.4
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 8.3e-122 441.0 320 70.3
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.4e-121 439.5 259 81.5
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.2e-120 437.2 259 81.1
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 1.0e-119 434.1 255 81.2
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 2.3e-116 422.9 275 74.9
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.3e-114 417.2 264 76.5
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 1.7e-106 390.2 331 58.9
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 8.3e-106 387.9 259 73.0
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 5.6e-102 375.2 231 78.4
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 9.5e-102 374.4 331 57.1
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 3.6e-101 372.5 339 56.0
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 8.1e-101 371.3 227 79.3
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 5.3e-84 315.5 359 49.6
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 2.3e-79 300.1 208 74.0
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 3.8e-74 282.7 275 57.8
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 6.7e-71 271.9 205 63.9
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 6.9e-68 261.9 174 72.4
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 1.1e-60 238.0 145 77.9
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 7.7e-59 231.9 212 57.1
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 9.7e-54 214.9 206 58.7
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 1.5e-51 207.6 317 38.5
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.7e-50 204.1 326 42.6
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 5.1e-47 192.6 193 56.0
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 2.2e-45 187.2 245 44.5
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 1.1e-44 184.9 430 31.4
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 3.3e-38 163.3 118 66.9
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 6.3e-37 159.1 114 71.1
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 3.1e-36 156.8 320 35.0
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 2.0e-35 154.1 227 46.7
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.2e-19 101.7 57 84.2
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 1.1e-17 95.1 250 32.0
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 5.5e-17 92.8 98 53.1
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 1.7e-13 81.3 45 82.2
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 6.3e-13 79.3 78 53.8
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 5.9e-11 72.8 55 63.6
Nitab4.5_0016721g0010 Nicotiana tabacum HOM05D002908 ORTHO05D283189 3.6e-08 63.5 83 53.0
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 8.0e-08 62.4 39 82.1
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 8.9e-07 58.9 30 83.3


User provided reference genes

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