Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold48G17990 Striga asiatica HOM05D004635 ORTHO05D405620 3.5e-92 341.7 177 100.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.1e-16 90.9 96 56.2
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.8e-11 73.6 86 52.3
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.3e-09 67.4 69 58.0
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.6e-09 67.0 60 60.0
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.6e-09 67.0 77 53.2
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.6e-09 67.0 60 60.0
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.6e-09 67.0 60 60.0
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.2e-09 66.6 60 60.0
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 2.8e-09 66.2 60 58.3
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 6.3e-09 65.1 52 67.3
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 8.2e-09 64.7 96 41.7
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.4e-08 63.9 60 60.0
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 2.4e-08 63.2 77 55.8
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 4.1e-08 62.4 68 51.5
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 5.3e-08 62.0 71 49.3
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 5.3e-08 62.0 83 47.0
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.3e-08 62.0 83 47.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.3e-08 62.0 83 47.0
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.3e-08 62.0 83 47.0
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.3e-08 62.0 83 47.0
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 5.3e-08 62.0 73 50.7
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 6.9e-08 61.6 77 45.5
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.6e-07 59.7 62 54.8
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 3.4e-07 59.3 68 52.9
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 5.9e-07 58.5 51 60.8
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 7.7e-07 58.2 68 50.0
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 7.7e-07 58.2 73 46.6
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.0e-06 57.8 62 56.5
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.3e-06 57.4 56 60.7
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.7e-06 57.0 68 50.0
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.7e-06 57.0 58 53.4
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.2e-06 56.6 83 44.6
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.2e-06 56.6 68 50.0
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 2.2e-06 56.6 68 50.0
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 2.2e-06 56.6 68 50.0
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.2e-06 56.6 58 53.4
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.2e-06 56.6 66 51.5
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 2.9e-06 56.2 106 39.6
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.8e-06 55.8 73 46.6
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.8e-06 55.8 67 52.2
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 5.0e-06 55.5 67 49.3
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 5.0e-06 55.5 60 50.0
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 5.0e-06 55.5 71 47.9
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 6.5e-06 55.1 73 46.6
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 6.5e-06 55.1 75 42.7
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 8.5e-06 54.7 75 44.0
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 8.5e-06 54.7 61 50.8
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 8.5e-06 54.7 73 43.8
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 8.5e-06 54.7 81 43.2


User provided reference genes

Program Settings