Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold46G17417 Striga asiatica HOM05D002696 ORTHO05D019089 1.1e-99 366.7 187 100.0
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 6.4e-28 128.3 122 64.8
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 4.1e-27 125.6 130 60.0
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 9.5e-24 114.4 110 63.6
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 8.9e-22 107.8 178 41.6
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 1.5e-21 107.1 165 44.2
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 5.8e-21 105.1 126 51.6
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 9.8e-21 104.4 165 43.0
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 9.8e-21 104.4 110 58.2
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 1.3e-20 104.0 185 42.2
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 1.3e-20 104.0 123 52.8
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 1.7e-20 103.6 110 57.3
Duzib205G1343 Durio zibethinus HOM05D002696 ORTHO05D003940 2.2e-20 103.2 111 55.0
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 2.2e-20 103.2 110 56.4
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 3.7e-20 102.4 183 41.0
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 3.7e-20 102.4 186 43.5
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 3.7e-20 102.4 122 52.5
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 4.9e-20 102.1 122 53.3
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 4.9e-20 102.1 128 51.6
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 8.3e-20 101.3 110 55.5
Atru.chr8.1045 Acer truncatum HOM05D002696 ORTHO05D003940 1.1e-19 100.9 110 57.3
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 1.4e-19 100.5 110 55.5
Solyc03g093260.3 Solanum lycopersicum HOM05D002696 ORTHO05D003940 1.4e-19 100.5 110 54.5
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 1.4e-19 100.5 110 54.5
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 1.9e-19 100.1 173 43.4
Dinv06564 Davidia involucrata HOM05D002696 ORTHO05D003940 2.4e-19 99.8 177 40.1
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 2.4e-19 99.8 122 51.6
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 5.4e-19 98.6 122 51.6
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 5.4e-19 98.6 122 51.6
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 7.1e-19 98.2 110 54.5
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 7.1e-19 98.2 110 53.6
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 7.1e-19 98.2 110 53.6
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 7.1e-19 98.2 110 53.6
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 9.2e-19 97.8 128 49.2
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 1.2e-18 97.4 170 45.3
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.2e-18 97.4 184 40.2
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 1.6e-18 97.1 171 40.9
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 3.5e-18 95.9 165 42.4
QL09p005526 Quercus lobata HOM05D002696 ORTHO05D003940 3.5e-18 95.9 165 41.8
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 3.5e-18 95.9 165 41.8
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 6.0e-18 95.1 110 54.5
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 6.0e-18 95.1 110 54.5
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 7.8e-18 94.7 110 54.5
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 7.8e-18 94.7 110 54.5
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 7.8e-18 94.7 110 55.5
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 7.8e-18 94.7 140 48.6
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.0e-17 94.4 139 46.8
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 1.3e-17 94.0 105 56.2
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 1.3e-17 94.0 140 46.4
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 1.3e-17 94.0 110 53.6
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 1.7e-17 93.6 121 49.6
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 1.7e-17 93.6 171 42.7
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 2.3e-17 93.2 121 49.6
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 2.3e-17 93.2 110 52.7
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 2.3e-17 93.2 122 50.8
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 3.0e-17 92.8 190 39.5
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 3.0e-17 92.8 110 54.5
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 3.9e-17 92.4 122 48.4
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 3.9e-17 92.4 105 56.2
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 5.1e-17 92.0 110 50.9
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 8.6e-17 91.3 120 46.7
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 8.6e-17 91.3 98 56.1
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 1.1e-16 90.9 110 52.7
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 1.1e-16 90.9 110 54.5
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 2.5e-16 89.7 130 43.1
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.5e-16 89.7 110 52.7
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.5e-16 89.7 110 52.7
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 3.3e-16 89.4 165 39.4
FvH4_7g27601 Fragaria vesca HOM05D002696 ORTHO05D019089 3.3e-16 89.4 171 40.9
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 4.3e-16 89.0 110 52.7
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.3e-16 89.0 134 45.5
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 7.3e-16 88.2 151 41.1
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 9.5e-16 87.8 173 40.5
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 1.2e-15 87.4 110 52.7
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 1.2e-15 87.4 110 50.0
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.2e-15 87.4 171 39.8
Lalb_Chr01g0008021 Lupinus albus HOM05D002696 ORTHO05D003940 1.2e-15 87.4 94 59.6
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 2.1e-15 86.7 108 50.0
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 2.1e-15 86.7 108 50.0
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 2.1e-15 86.7 108 50.0
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.1e-15 86.7 110 49.1
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 2.8e-15 86.3 108 50.9
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 2.8e-15 86.3 108 50.0
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 2.8e-15 86.3 108 50.0
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 2.8e-15 86.3 109 49.5
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 3.6e-15 85.9 108 50.0
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 3.6e-15 85.9 109 51.4
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 3.6e-15 85.9 165 40.0
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 4.7e-15 85.5 110 50.0
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 6.2e-15 85.1 110 49.1
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 8.1e-15 84.7 145 42.1
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 8.1e-15 84.7 110 49.1
FAN06G1128 Fragaria x ananassa HOM05D002696 ORTHO05D003940 8.1e-15 84.7 110 49.1
FAN06G1338 Fragaria x ananassa HOM05D002696 ORTHO05D003940 8.1e-15 84.7 105 49.5
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.1e-14 84.3 171 40.4
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.4e-14 84.0 171 39.8
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 1.4e-14 84.0 108 49.1
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 1.4e-14 84.0 110 49.1
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 1.8e-14 83.6 108 49.1
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 2.3e-14 83.2 108 49.1
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 2.3e-14 83.2 171 39.8
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 3.1e-14 82.8 108 48.1
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 3.1e-14 82.8 109 51.4
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 3.1e-14 82.8 110 50.9
SEGI_01462 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 3.1e-14 82.8 110 50.9
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 3.1e-14 82.8 110 50.9
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 4.0e-14 82.4 108 48.1
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 5.2e-14 82.0 109 49.5
FvH4_7g27690 Fragaria vesca HOM05D002696 ORTHO05D019089 5.2e-14 82.0 99 50.5
Dinv28583 Davidia involucrata HOM05D002696 ORTHO05D019089 6.8e-14 81.6 131 48.1
FAN06G0900 Fragaria x ananassa HOM05D002696 ORTHO05D003940 6.8e-14 81.6 110 48.2
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 6.8e-14 81.6 109 46.8
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 8.9e-14 81.3 108 48.1
FAN06G4793 Fragaria x ananassa HOM05D002696 ORTHO05D019089 1.2e-13 80.9 99 51.5
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.5e-13 80.5 89 55.1
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 3.4e-13 79.3 89 55.1
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 3.4e-13 79.3 165 35.2
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 4.4e-13 79.0 111 49.5
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 5.8e-13 78.6 165 33.9
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 1.3e-12 77.4 108 45.4
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 1.7e-12 77.0 112 48.2
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 2.2e-12 76.6 128 41.4
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 4.9e-12 75.5 108 45.4
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 8.4e-12 74.7 128 42.2
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 2.4e-11 73.2 108 43.5
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 3.2e-11 72.8 120 40.8
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 5.4e-11 72.0 112 46.4
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 7.1e-11 71.6 163 36.2
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 7.1e-11 71.6 103 44.7
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 1.2e-10 70.9 103 44.7
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 1.2e-10 70.9 109 43.1
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 6.0e-10 68.6 168 35.7
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 7.8e-10 68.2 112 44.6
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 2.3e-09 66.6 112 43.8
Aqoxy7G02846 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 3.9e-09 65.9 110 40.0
FAN06G4118 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.9e-09 65.9 91 47.3
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 5.1e-09 65.5 113 45.1
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 8.6e-09 64.7 175 32.6
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 8.6e-09 64.7 91 47.3
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 2.5e-08 63.2 108 43.5
Actinidia20692 Actinidia chinensis HOM05D002696 ORTHO05D003940 3.3e-08 62.8 59 61.0
FAN06G2222 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.3e-08 62.8 82 46.3
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 4.3e-08 62.4 108 42.6
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 5.6e-08 62.0 112 42.9
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 5.6e-08 62.0 112 42.9
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 5.6e-08 62.0 112 42.9
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 5.6e-08 62.0 112 42.9
FAN10G2221 Fragaria x ananassa HOM05D005822 ORTHO05D007267 4.7e-07 58.9 93 41.9
FvH4_7g28372 Fragaria vesca HOM05D002696 ORTHO05D023279 1.8e-06 57.0 96 44.8
FAN06G0680 Fragaria x ananassa HOM05D002696 ORTHO05D019089 4.0e-06 55.8 55 56.4


User provided reference genes

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