Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 4.0e-60 234.6 120 100.0
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 1.2e-43 179.9 103 87.4
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.4e-41 172.9 98 88.8
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.8e-28 129.4 89 77.5
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 2.4e-28 129.0 91 73.6
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 1.5e-22 109.8 89 64.0
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 3.7e-21 105.1 90 56.7
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 1.3e-18 96.7 88 60.2
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 4.2e-17 91.7 92 51.1
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 5.5e-17 91.3 101 52.5
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 3.6e-16 88.6 98 49.0
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.0e-15 87.0 85 54.1
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.0e-15 87.0 85 54.1
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.8e-15 86.3 101 50.5
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 3.0e-15 85.5 101 50.5
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 5.2e-15 84.7 101 49.5
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 2.6e-14 82.4 84 51.2
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 3.4e-14 82.0 85 49.4
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.4e-14 81.6 101 49.5
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 7.5e-14 80.9 87 52.9
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 9.8e-14 80.5 95 49.5
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 1.4e-12 76.6 73 52.1
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 2.4e-12 75.9 85 47.1
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 3.1e-12 75.5 95 44.2
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 4.1e-12 75.1 87 47.1
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 4.1e-12 75.1 106 42.5
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 5.4e-12 74.7 99 42.4
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 5.4e-12 74.7 97 44.3
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 7.0e-12 74.3 66 60.6
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 9.1e-12 73.9 95 43.2
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 9.1e-12 73.9 96 44.8
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 9.1e-12 73.9 96 44.8
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 9.1e-12 73.9 98 39.8
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 9.1e-12 73.9 95 44.2
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 1.2e-11 73.6 99 42.4
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.2e-11 73.6 117 41.0
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 1.2e-11 73.6 101 40.6
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.6e-11 73.2 100 46.0
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 1.6e-11 73.2 78 48.7
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 2.0e-11 72.8 99 41.4
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 2.0e-11 72.8 101 39.6
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 2.0e-11 72.8 101 39.6
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 2.7e-11 72.4 72 55.6
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 2.7e-11 72.4 72 55.6
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 2.7e-11 72.4 99 42.4
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 2.7e-11 72.4 99 42.4
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 3.5e-11 72.0 72 54.2
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 3.5e-11 72.0 72 54.2
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 4.5e-11 71.6 72 54.2
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 5.9e-11 71.2 103 46.6
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 5.9e-11 71.2 117 41.0
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 5.9e-11 71.2 117 41.0
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 5.9e-11 71.2 99 42.4
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 7.7e-11 70.9 95 42.1
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 7.7e-11 70.9 73 47.9
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 7.7e-11 70.9 100 43.0
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.0e-10 70.5 95 41.1
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.0e-10 70.5 95 40.0
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 1.0e-10 70.5 72 52.8
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 1.3e-10 70.1 100 45.0
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 1.3e-10 70.1 99 43.4
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 2.3e-10 69.3 101 38.6
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.3e-10 69.3 85 42.4
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 2.9e-10 68.9 72 51.4
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 5.0e-10 68.2 72 50.0
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 5.0e-10 68.2 95 40.0
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 5.0e-10 68.2 72 51.4
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 5.0e-10 68.2 95 38.9
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 6.6e-10 67.8 103 44.7
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 6.6e-10 67.8 95 40.0
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 6.6e-10 67.8 97 40.2
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 8.6e-10 67.4 99 40.4
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 8.6e-10 67.4 85 41.2
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 1.9e-09 66.2 72 52.8
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 1.9e-09 66.2 72 45.8
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 2.5e-09 65.9 72 50.0
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 4.2e-09 65.1 72 48.6
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 4.2e-09 65.1 80 47.5
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 4.2e-09 65.1 93 43.0
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 5.5e-09 64.7 72 44.4
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 5.5e-09 64.7 61 54.1
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 5.5e-09 64.7 85 42.4
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 9.5e-09 63.9 71 46.5
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 9.5e-09 63.9 101 40.6
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 9.5e-09 63.9 101 40.6
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 9.5e-09 63.9 101 38.6
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 1.2e-08 63.5 72 47.2
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 1.2e-08 63.5 101 37.6
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 1.6e-08 63.2 88 43.2
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 2.8e-08 62.4 70 47.1
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 2.8e-08 62.4 96 38.5
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 3.6e-08 62.0 101 35.6
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 4.7e-08 61.6 74 45.9
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 8.0e-08 60.8 72 45.8
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 8.0e-08 60.8 96 38.5
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 8.0e-08 60.8 87 36.8
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 8.0e-08 60.8 79 40.5
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 1.8e-07 59.7 92 39.1
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 3.0e-07 58.9 95 36.8
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 4.0e-07 58.5 109 36.7
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 6.8e-07 57.8 81 39.5
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 8.9e-07 57.4 81 39.5
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 3.4e-06 55.5 91 39.6
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 3.4e-06 55.5 91 37.4


User provided reference genes

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