Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 5.3e-139 497.7 247 100.0
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 4.2e-96 355.1 209 85.2
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.6e-93 345.9 210 85.2
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.8e-91 339.7 208 82.2
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 2.4e-91 339.3 208 82.7
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 3.1e-91 339.0 210 81.4
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 1.2e-90 337.0 208 81.7
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 4.5e-90 335.1 207 81.6
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 6.5e-89 331.3 207 82.6
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 1.1e-88 330.5 207 80.2
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.5e-88 330.1 209 79.4
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 2.5e-88 329.3 210 80.0
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 3.2e-88 328.9 208 78.8
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 4.2e-88 328.6 207 81.2
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 5.5e-88 328.2 209 79.9
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 5.5e-88 328.2 209 79.9
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 7.2e-88 327.8 207 80.2
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 6.1e-87 324.7 209 78.9
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 1.4e-86 323.6 207 78.3
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.4e-86 323.6 221 76.0
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 1.8e-86 323.2 207 77.8
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 1.8e-86 323.2 207 78.3
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 3.0e-86 322.4 207 78.7
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 5.2e-86 321.6 208 77.9
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 5.2e-86 321.6 207 76.8
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 6.8e-86 321.2 200 80.5
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 6.8e-86 321.2 207 78.7
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 8.8e-86 320.9 200 78.5
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 1.2e-85 320.5 210 77.1
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 2.0e-85 319.7 207 77.3
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 3.4e-85 318.9 207 79.2
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 5.7e-85 318.2 207 78.3
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 7.5e-85 317.8 202 78.2
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 1.3e-84 317.0 182 82.4
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 2.2e-84 316.2 209 78.9
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.2e-84 316.2 207 76.3
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 2.2e-84 316.2 207 77.8
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 2.2e-84 316.2 205 78.5
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 2.8e-84 315.8 181 84.5
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.8e-84 315.8 207 75.8
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 3.7e-84 315.5 207 78.3
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 3.7e-84 315.5 185 81.6
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 4.9e-84 315.1 202 78.2
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 8.3e-84 314.3 215 74.0
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.1e-83 313.9 207 77.3
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.1e-83 313.9 207 78.7
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 1.1e-83 313.9 207 75.4
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 3.1e-83 312.4 179 83.8
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 4.1e-83 312.0 208 75.0
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 5.4e-83 311.6 207 76.3
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 7.0e-83 311.2 179 82.7
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 7.0e-83 311.2 208 78.8
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 7.0e-83 311.2 200 79.0
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 1.2e-82 310.5 200 77.0
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 1.2e-82 310.5 205 75.6
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 1.6e-82 310.1 178 83.1
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.5e-82 308.9 182 81.9
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 7.7e-82 307.8 202 76.2
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 7.7e-82 307.8 207 77.8
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 1.0e-81 307.4 203 76.4
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 1.0e-81 307.4 186 81.2
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.0e-81 307.4 204 76.0
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 1.3e-81 307.0 207 74.4
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 1.3e-81 307.0 204 75.5
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 2.3e-81 306.2 198 76.3
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 5.0e-81 305.1 174 83.3
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.1e-80 303.9 207 72.9
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.5e-80 303.5 207 73.9
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 2.5e-80 302.8 234 69.7
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 3.3e-80 302.4 174 82.8
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 1.2e-79 300.4 191 77.0
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 1.6e-79 300.1 207 72.0
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 2.8e-79 299.3 207 71.5
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 6.1e-79 298.1 207 72.0
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 6.8e-78 294.7 193 76.2
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 3.4e-77 292.4 183 76.5
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.2e-76 289.7 173 85.0
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 2.9e-76 289.3 186 73.7
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 6.3e-76 288.1 203 71.4
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.4e-75 287.0 172 84.3
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 4.1e-75 285.4 192 72.4
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 5.4e-75 285.0 207 68.1
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 7.0e-75 284.6 196 70.9
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 1.6e-74 283.5 193 71.5
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 2.0e-74 283.1 206 72.8
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 2.7e-74 282.7 192 71.9
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 7.8e-74 281.2 193 70.5
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 2.9e-73 279.3 192 70.8
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 3.9e-73 278.9 192 70.8
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 1.1e-72 277.3 192 69.8
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 2.5e-72 276.2 192 70.3
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 7.3e-72 274.6 176 77.8
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 9.5e-72 274.2 178 72.5
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.2e-71 273.9 192 69.8
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 1.2e-71 273.9 203 72.9
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 3.6e-71 272.3 185 71.9
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 8.0e-71 271.2 205 67.8
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 1.4e-70 270.4 192 68.8
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 5.2e-70 268.5 192 68.8
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 8.9e-70 267.7 192 68.2
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 4.4e-69 265.4 169 76.3
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 2.2e-68 263.1 202 65.8
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 3.7e-68 262.3 169 74.6
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 5.0e-65 251.9 229 57.6
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 2.6e-61 239.6 183 64.5
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 1.7e-60 236.9 200 60.0
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 7.1e-59 231.5 187 62.0
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 3.6e-55 219.2 179 60.9
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 2.9e-52 209.5 132 76.5
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 6.6e-49 198.4 118 81.4
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 1.1e-48 197.6 118 82.2
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 3.5e-42 176.0 125 70.4
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 6.2e-39 165.2 208 46.6
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 2.4e-38 163.3 103 76.7
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 1.3e-33 147.5 93 78.5
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 1.9e-32 143.7 80 85.0
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 5.6e-32 142.1 197 47.7
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 1.6e-31 140.6 89 77.5
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 3.9e-25 119.4 208 41.8
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 1.9e-24 117.1 92 67.4
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 1.4e-22 110.9 85 60.0
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 2.4e-22 110.2 77 71.4
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.0e-20 104.8 58 82.8
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.1e-19 101.3 203 40.4
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 3.3e-16 89.7 57 71.9
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 9.6e-16 88.2 130 37.7
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 1.6e-15 87.4 63 63.5
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 5.3e-14 82.4 181 35.4
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 9.0e-14 81.6 63 68.3
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 3.8e-12 76.3 122 41.0
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 6.3e-07 58.9 94 38.3
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 6.3e-07 58.9 94 38.3
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.3e-06 55.8 64 48.4


User provided reference genes

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