Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold459G51946 Striga asiatica HOM05D043503 ORTHO05D406235 4.9e-114 414.5 208 100.0
SGA_v2.0_scaffold109G31045 Striga asiatica HOM05D043503 ORTHO05D403113 9.2e-28 127.9 79 82.3
SGA_v2.0_scaffold125G33754 Striga asiatica HOM05D001347 ORTHO05D001198 1.7e-18 97.1 45 97.8
MSTRG.16831 Avicennia marina HOM05D001347 ORTHO05D001198 2.6e-14 83.2 54 70.4
Dinv42029 Davidia involucrata HOM05D001347 ORTHO05D001198 2.6e-14 83.2 54 70.4
Peaxi162Scf00016g00354 Petunia axillaris HOM05D001347 ORTHO05D001198 3.4e-14 82.8 63 63.5
CSS0021127 Camellia sinensis var. sinensis HOM05D001347 ORTHO05D001198 1.3e-13 80.9 54 66.7
Solyc01g110020.4 Solanum lycopersicum HOM05D001347 ORTHO05D001198 1.3e-13 80.9 54 70.4
Sopen01g052210 Solanum pennellii HOM05D001347 ORTHO05D001198 1.3e-13 80.9 54 70.4
Dinv23482 Davidia involucrata HOM05D001347 ORTHO05D001198 1.7e-13 80.5 54 66.7
Actinidia00559 Actinidia chinensis HOM05D001347 ORTHO05D001198 2.9e-13 79.7 54 64.8
Manes.04G086100 Manihot esculenta HOM05D001347 ORTHO05D001198 1.9e-12 77.0 54 64.8
Migut.B00203 Erythranthe guttata HOM05D001347 ORTHO05D001198 2.4e-12 76.6 54 68.5
GSVIVG01024220001 Vitis vinifera HOM05D001347 ORTHO05D001198 3.2e-12 76.3 54 64.8
CANSAT11G0682 Cannabis sativa HOM05D001347 ORTHO05D001198 4.2e-12 75.9 54 63.0
CAN.G1544.15 Capsicum annuum HOM05D001347 ORTHO05D001198 4.2e-12 75.9 54 64.8
Hund00237 Selenicereus undatus HOM05D001347 ORTHO05D001198 4.2e-12 75.9 53 62.3
PGSC0003DMG400030955 Solanum tuberosum HOM05D001347 ORTHO05D001198 4.2e-12 75.9 54 70.4
CsaV3_7G000170 Cucumis sativus L. HOM05D001347 ORTHO05D001198 5.4e-12 75.5 70 52.9
Migut.N01263 Erythranthe guttata HOM05D001347 ORTHO05D001198 1.2e-11 74.3 54 66.7
Gohir.A03G197400 Gossypium hirsutum HOM05D001347 ORTHO05D001198 1.2e-11 74.3 54 63.0
Gohir.D02G218700 Gossypium hirsutum HOM05D001347 ORTHO05D001198 1.2e-11 74.3 54 63.0
Gorai.005G246700 Gossypium raimondii HOM05D001347 ORTHO05D001198 1.2e-11 74.3 54 63.0
Gorai.013G034100 Gossypium raimondii HOM05D001347 ORTHO05D001198 1.2e-11 74.3 54 61.1
Thecc.02G079200 Theobroma cacao HOM05D001347 ORTHO05D001198 1.2e-11 74.3 54 63.0
Ciclev10029260m.g Citrus clementina HOM05D001347 ORTHO05D001198 1.6e-11 73.9 54 64.8
Lsat_1_v5_gn_5_120381 Lactuca sativa HOM05D001347 ORTHO05D001198 1.6e-11 73.9 54 61.1
Nitab4.5_0005919g0040 Nicotiana tabacum HOM05D001347 ORTHO05D001198 1.6e-11 73.9 46 67.4
Prupe.8G089400 Prunus persica HOM05D001347 ORTHO05D001198 1.6e-11 73.9 54 61.1
Lalb_Chr23g0265231 Lupinus albus HOM05D001347 ORTHO05D001198 2.1e-11 73.6 54 61.1
Phvul.009G004500 Phaseolus vulgaris HOM05D001347 ORTHO05D001198 2.1e-11 73.6 54 61.1
VMungo1309G2885 Vigna mungo HOM05D001347 ORTHO05D001198 2.1e-11 73.6 54 61.1
ECA234G2745 Erigeron canadensis HOM05D001347 ORTHO05D001198 4.6e-11 72.4 54 61.1
Glyma.04G009500 Glycine max HOM05D001347 ORTHO05D001198 6.0e-11 72.0 54 59.3
MD10G1067700 Malus domestica HOM05D001347 ORTHO05D001198 6.0e-11 72.0 54 59.3
Medtr3g117270 Medicago truncatula HOM05D001347 ORTHO05D001198 6.0e-11 72.0 54 61.1
unitig_0.g56 Utricularia gibba HOM05D001347 ORTHO05D001198 6.0e-11 72.0 54 57.4
MSTRG.20059 Avicennia marina HOM05D001347 ORTHO05D001198 7.9e-11 71.6 53 62.3
Sc08g0000690 Simmondsia chinensis HOM05D001347 ORTHO05D001198 7.9e-11 71.6 54 59.3
Gohir.A13G031800 Gossypium hirsutum HOM05D001347 ORTHO05D001198 1.0e-10 71.2 54 59.3
Lj9A378G55 Lonicera japonica HOM05D001347 ORTHO05D001198 1.0e-10 71.2 46 65.2
Sed0017186 Sechium edule HOM05D001347 ORTHO05D001198 1.0e-10 71.2 54 59.3
TWI79G1665 Tripterygium wilfordii HOM05D001347 ORTHO05D001198 1.0e-10 71.2 54 61.1
Ca_30249_v3 Cicer arietinum L. HOM05D001347 ORTHO05D001198 1.3e-10 70.9 54 61.1
HanXRQChr10g0306971 Helianthus annuus HOM05D001347 ORTHO05D001198 1.3e-10 70.9 53 58.5
PGR142G2498 Punica granatum HOM05D001347 ORTHO05D001198 1.3e-10 70.9 54 61.1
MD05G1059600 Malus domestica HOM05D001347 ORTHO05D001198 1.8e-10 70.5 54 57.4
Ah.01g019070 Amaranthus hybridus HOM05D001347 ORTHO05D001198 3.9e-10 69.3 54 57.4
FAN20G2776 Fragaria x ananassa HOM05D001347 ORTHO05D001198 6.7e-10 68.6 54 59.3
FAN27G0826 Fragaria x ananassa HOM05D001347 ORTHO05D001198 6.7e-10 68.6 54 59.3
Gohir.A01G004100 Gossypium hirsutum HOM05D001347 ORTHO05D001198 6.7e-10 68.6 53 54.7
Lj1g0017168 Lotus japonicus HOM05D001347 ORTHO05D001198 6.7e-10 68.6 53 62.3
Potri.004G159900 Populus trichocarpa HOM05D001347 ORTHO05D001198 6.7e-10 68.6 54 61.1
Potri.009G121000 Populus trichocarpa HOM05D001347 ORTHO05D001198 6.7e-10 68.6 54 61.1
RcHm_v2.0_Chr6g0266611 Rosa chinensis HOM05D001347 ORTHO05D001198 6.7e-10 68.6 54 59.3
Nitab4.5_0009512g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 8.7e-10 68.2 45 64.4
FAN15G0039 Fragaria x ananassa HOM05D001347 ORTHO05D001198 1.1e-09 67.8 54 59.3
FAN24G0427 Fragaria x ananassa HOM05D001347 ORTHO05D001198 1.5e-09 67.4 54 57.4
Sabra09G0093400 Salix brachista HOM05D001347 ORTHO05D001198 1.5e-09 67.4 54 59.3
Sed0006185 Sechium edule HOM05D001347 ORTHO05D001198 1.5e-09 67.4 54 57.4
TPR.G32180 Trifolium pratense HOM05D001347 ORTHO05D001198 1.5e-09 67.4 54 57.4
TAR381G1699 Trochodendron aralioides HOM05D001347 ORTHO05D001198 1.9e-09 67.0 54 59.3
CiPaw.05G070700 Carya illinoinensis HOM05D001347 ORTHO05D001198 2.5e-09 66.6 54 61.1
Cc02_g17160 Coffea canephora HOM05D001347 ORTHO05D001198 2.5e-09 66.6 54 55.6
SEGI_21556 Sequoiadendron giganteum HOM05D001347 ORTHO05D001198 2.5e-09 66.6 54 55.6
Gorai.009G181300 Gossypium raimondii HOM05D001347 ORTHO05D001198 3.3e-09 66.2 69 46.4
Medtr3g117280 Medicago truncatula HOM05D001347 ORTHO05D001198 4.3e-09 65.9 54 57.4
Haze_02318 Corylus avellana HOM05D001347 ORTHO05D001198 9.6e-09 64.7 46 58.7
Nn5g29144 Nelumbo nucifera HOM05D001347 ORTHO05D001198 9.6e-09 64.7 54 53.7
ClCG02G004750 Citrullus lanatus HOM05D001347 ORTHO05D001198 1.3e-08 64.3 46 58.7
vmacro17454 Vaccinium macrocarpon HOM05D001347 ORTHO05D001198 1.3e-08 64.3 52 51.9
Duzib052G0857 Durio zibethinus HOM05D001347 ORTHO05D001198 2.1e-08 63.5 45 60.0
Duzib132G0595 Durio zibethinus HOM05D001347 ORTHO05D001198 2.1e-08 63.5 46 56.5
Eucgr.I01296 Eucalyptus grandis HOM05D001347 ORTHO05D001198 2.8e-08 63.2 54 55.6
TAR376G0046 Trochodendron aralioides HOM05D001347 ORTHO05D001198 2.8e-08 63.2 52 51.9
Lsat_1_v5_gn_7_91740 Lactuca sativa HOM05D001347 ORTHO05D001198 3.7e-08 62.8 54 51.9
AUR62011278 Chenopodium quinoa HOM05D001347 ORTHO05D001198 4.8e-08 62.4 47 55.3
AUR62016780 Chenopodium quinoa HOM05D001347 ORTHO05D001198 4.8e-08 62.4 46 56.5
Sabra04G0106900 Salix brachista HOM05D001347 ORTHO05D001198 4.8e-08 62.4 52 51.9
MBI01_g12896_MAGBIO Magnolia biondii HOM05D001347 ORTHO05D001198 6.2e-08 62.0 54 48.1
EL10Ac9g21685 Beta vulgaris HOM05D001347 ORTHO05D001198 8.1e-08 61.6 45 55.6
Gohir.D05G175900 Gossypium hirsutum HOM05D001347 ORTHO05D001198 1.1e-07 61.2 54 50.0
Oeu020726.1 Olea europaea HOM05D001347 ORTHO05D001198 1.1e-07 61.2 46 58.7
Os03g0799600 Oryza sativa ssp. japonica HOM05D001347 ORTHO05D001198 1.1e-07 61.2 54 50.0
QL11p045401 Quercus lobata HOM05D001347 ORTHO05D001198 1.1e-07 61.2 46 54.3
Gohir.A05G172900 Gossypium hirsutum HOM05D001347 ORTHO05D001198 1.4e-07 60.8 54 50.0
Oeu046142.1 Olea europaea HOM05D001347 ORTHO05D001198 1.4e-07 60.8 46 56.5
Atru.chr5.3101 Acer truncatum HOM05D001347 ORTHO05D001198 1.8e-07 60.5 39 64.1
Manes.17G027500 Manihot esculenta HOM05D001347 ORTHO05D001198 1.8e-07 60.5 54 51.9
PGR004G0932 Punica granatum HOM05D001347 ORTHO05D001198 1.8e-07 60.5 54 51.9
Sc17g0007570 Simmondsia chinensis HOM05D001347 ORTHO05D001198 1.8e-07 60.5 54 53.7
Ca_15346_v3 Cicer arietinum L. HOM05D001347 ORTHO05D001198 2.4e-07 60.1 45 57.8
MELO3C013440.2 Cucumis melo HOM05D001347 ORTHO05D001198 3.1e-07 59.7 47 59.6
THA.LOC104813414 Tarenaya hassleriana HOM05D001347 ORTHO05D001198 3.1e-07 59.7 55 56.4
Thecc.06G227800 Theobroma cacao HOM05D001347 ORTHO05D001198 3.1e-07 59.7 54 51.9
Gohir.A09G068400 Gossypium hirsutum HOM05D001347 ORTHO05D001198 4.0e-07 59.3 56 50.0
Gohir.D09G068100 Gossypium hirsutum HOM05D001347 ORTHO05D001198 4.0e-07 59.3 56 50.0
Gorai.006G082500 Gossypium raimondii HOM05D001347 ORTHO05D001198 4.0e-07 59.3 56 50.0
Sp6g04540 Schrenkiella parvula HOM05D001347 ORTHO05D001198 4.0e-07 59.3 55 56.4
Duzib192G0159 Durio zibethinus HOM05D001347 ORTHO05D001198 5.3e-07 58.9 54 51.9
Sp7g36730 Schrenkiella parvula HOM05D001347 ORTHO05D001198 6.9e-07 58.5 50 56.0
THA.LOC104806316 Tarenaya hassleriana HOM05D001347 ORTHO05D001198 6.9e-07 58.5 55 52.7
GSVIVG01004809001 Vitis vinifera HOM05D001347 ORTHO05D001198 6.9e-07 58.5 54 48.1
BcaC01g00767 Brassica carinata HOM05D001347 ORTHO05D001198 9.0e-07 58.2 55 49.1
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 9.0e-07 58.2 50 56.0
Gorai.002G005000 Gossypium raimondii HOM05D001347 ORTHO05D001198 9.0e-07 58.2 45 51.1
Os07g0186400 Oryza sativa ssp. japonica HOM05D001347 ORTHO05D001198 9.0e-07 58.2 55 50.9
Potri.004G004900 Populus trichocarpa HOM05D001347 ORTHO05D001198 9.0e-07 58.2 55 50.9
BcaNung00810 Brassica carinata HOM05D001347 ORTHO05D001198 1.5e-06 57.4 55 50.9
Nn007s41418 Nelumbo nucifera HOM05D001347 ORTHO05D001198 1.5e-06 57.4 46 52.2
Potri.006G270601 Populus trichocarpa HOM05D001347 ORTHO05D001198 1.5e-06 57.4 55 49.1
Potri.011G010901 Populus trichocarpa HOM05D001347 ORTHO05D001198 1.5e-06 57.4 55 49.1
Zm00001eb302190 Zea mays HOM05D001347 ORTHO05D001198 1.5e-06 57.4 55 50.9
AL7G31550 Arabidopsis lyrata HOM05D001347 ORTHO05D001198 2.0e-06 57.0 55 50.9
AT4G22140 Arabidopsis thaliana HOM05D001347 ORTHO05D001198 2.0e-06 57.0 55 50.9
Carub.0006s3214 Capsella rubella HOM05D001347 ORTHO05D001198 2.0e-06 57.0 56 51.8
Cpa.g.sc152.54 Carica papaya HOM05D001347 ORTHO05D001198 2.0e-06 57.0 54 48.1
Thhalv10028947m.g Eutrema salsugineum HOM05D001347 ORTHO05D001198 2.0e-06 57.0 55 54.5
Gohir.D06G157100 Gossypium hirsutum HOM05D001347 ORTHO05D001198 2.0e-06 57.0 54 46.3
Gorai.010G183600 Gossypium raimondii HOM05D001347 ORTHO05D001198 2.0e-06 57.0 54 46.3
THA.LOC104823537 Tarenaya hassleriana HOM05D001347 ORTHO05D001198 2.0e-06 57.0 58 50.0
BcaNung03760 Brassica carinata HOM05D001347 ORTHO05D001198 2.6e-06 56.6 55 50.9
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 3.4e-06 56.2 50 54.0
AL6G47850 Arabidopsis lyrata HOM05D001347 ORTHO05D001198 4.5e-06 55.8 56 51.8
CARHR228970 Cardamine hirsuta HOM05D001347 ORTHO05D001198 4.5e-06 55.8 55 49.1
Duzib160G0407 Durio zibethinus HOM05D001347 ORTHO05D001198 4.5e-06 55.8 54 50.0
Thhalv10026181m.g Eutrema salsugineum HOM05D001347 ORTHO05D001198 4.5e-06 55.8 55 49.1
Gohir.A06G150900 Gossypium hirsutum HOM05D001347 ORTHO05D001198 4.5e-06 55.8 54 44.4
PSO541G3814 Papaver somniferum HOM05D001347 ORTHO05D001198 4.5e-06 55.8 54 46.3
PSO675G4965 Papaver somniferum HOM05D001347 ORTHO05D001198 4.5e-06 55.8 54 46.3
TWI75G1013 Tripterygium wilfordii HOM05D001347 ORTHO05D001198 4.5e-06 55.8 55 52.7
Carub.0007s0097 Capsella rubella HOM05D001347 ORTHO05D001198 5.8e-06 55.5 50 52.0
Carub.0007s1918 Capsella rubella HOM05D001347 ORTHO05D001198 5.8e-06 55.5 55 50.9
Dinv08735 Davidia involucrata HOM05D001347 ORTHO05D001198 5.8e-06 55.5 55 54.5
Dinv39739 Davidia involucrata HOM05D001347 ORTHO05D001198 5.8e-06 55.5 55 54.5
Manes.12G071100 Manihot esculenta HOM05D001347 ORTHO05D001198 5.8e-06 55.5 55 52.7
Hund21435 Selenicereus undatus HOM05D001347 ORTHO05D001198 5.8e-06 55.5 56 50.0
Aa31LG6G4290 Aethionema arabicum HOM05D001347 ORTHO05D001198 7.6e-06 55.1 55 50.9
BcaC09g51158 Brassica carinata HOM05D001347 ORTHO05D001198 7.6e-06 55.1 55 49.1
C01p16320 Brassica napus HOM05D001347 ORTHO05D001198 7.6e-06 55.1 55 49.1
BolC1t01583H Brassica oleracea HOM05D001347 ORTHO05D001198 7.6e-06 55.1 55 49.1
Potri.002G226000 Populus trichocarpa HOM05D001347 ORTHO05D001198 7.6e-06 55.1 55 54.5
CANSAT56G0984 Cannabis sativa HOM05D001347 ORTHO05D001198 9.9e-06 54.7 56 51.8
CARHR253170 Cardamine hirsuta HOM05D001347 ORTHO05D001198 9.9e-06 54.7 56 50.0
MELO3C018842.2 Cucumis melo HOM05D001347 ORTHO05D001198 9.9e-06 54.7 55 52.7
MELO3C021722.2 Cucumis melo HOM05D001347 ORTHO05D001198 9.9e-06 54.7 55 47.3
CsaV3_7G003320 Cucumis sativus L. HOM05D001347 ORTHO05D001198 9.9e-06 54.7 55 52.7
Sp7g20290 Schrenkiella parvula HOM05D001347 ORTHO05D001198 9.9e-06 54.7 55 49.1
SGA_v2.0_scaffold58G20495 Striga asiatica HOM05D001347 ORTHO05D001198 9.9e-06 54.7 46 50.0


User provided reference genes

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