Gene: Solyc01g110020.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g110020.4
  • Transcript Identifier Solyc01g110020.4.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 89184117-89190000 : positive

Gene Family Information

  • ID HOM05D001347
  • #Genes/#Species 467/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g110020.4.1
  • uniprot A0A3Q7EV15
  • gene_id Solyc01g110020

Descriptions

  • Description PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (AHRD V3.3 *** A0A2U1QMN7_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006325
IEA
GOA Databasechromatin organization
GO:0035067
ISO
PLAZA Integrative Orthologynegative regulation of histone acetylation AT4G39100
GO:0009640
ISO
PLAZA Integrative Orthologyphotomorphogenesis AT4G39100
GO:0009791
ISO
PLAZA Integrative Orthologypost-embryonic development AT4G39100
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT4G39100
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT4G39100
GO:2000028
ISO
PLAZA Integrative Orthologyregulation of photoperiodism, flowering AT4G39100

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003682
IEA
GOA Databasechromatin binding
GO:0003682
IEA
InterProchromatin binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G39100
GO:0035064
ISO
PLAZA Integrative Orthologymethylated histone binding AT4G39100
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT4G39100

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G39100

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR043151 Bromo adjacent homology (BAH) domain superfamily
IPR011011 Zinc finger, FYVE/PHD-type
IPR001025 Bromo adjacent homology (BAH) domain
IPR019787 Zinc finger, PHD-finger
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001965 Zinc finger, PHD-type
Mapman id Description
12.3.6.2.1 Chromatin organisation.post-translational histone modification.PRC1 bifunctional histone ubiquitination and methylation reader complex.associated factors.methylation reader (SHL/EBS)